position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title aniger -origin center -offset 6 -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 37 Sum of sequence lengths 32964 Min sequence length 0 Max sequence length 1000 Average sequence length 890 Possible positions 32964 Sequences: # length ID 1 1000 pid_1787_+ 2 1000 pid_4473_- 3 1000 pid_10881_+ 4 1000 pid_9810_+ 5 955 pid_11670_- 6 1000 pid_10052_- 7 1000 pid_4471_+ 8 1000 pid_8708_+ 9 1000 pid_9019_- 10 1000 pid_8994_+ 11 1000 pid_3339_- 12 1000 pid_8911_- 13 591 pid_1069_+ 14 1000 pid_9001_- 15 1000 pid_9251_- 16 1000 pid_1918_- 17 835 pid_11715_- 18 320 pid_2451_+ 19 1000 pid_1071_+ 20 1000 pid_7_- 21 1000 pid_819_- 22 630 pid_9556_+ 23 543 pid_1952_- 24 1000 pid_10868_+ 25 1000 pid_8707_- 26 448 pid_11685_+ 27 1000 pid_2929_+ 28 1000 pid_9002_+ 29 1000 pid_268_+ 30 841 pid_10870_+ 31 495 pid_7382_+ 32 1000 pid_8993_- 33 1000 pid_3928_- 34 593 pid_4917_+ 35 1000 pid_1648_- 36 713 pid_4328_- 37 1000 pid_4034_+ Oligonucleotide statistics: Total occurrences 31934 Position interval parameters: Position interval 20 Number of windows 51 Total positions 32964 Degrees of freedom 50 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -26 [-519,-500] -509.5 26 156 2 -25 [-499,-480] -489.5 27 524 3 -24 [-479,-460] -469.5 27 540 4 -23 [-459,-440] -449.5 27 540 5 -22 [-439,-420] -429.5 29 551 6 -21 [-419,-400] -409.5 29 580 7 -20 [-399,-380] -389.5 29 580 8 -19 [-379,-360] -369.5 30 583 9 -18 [-359,-340] -349.5 30 600 10 -17 [-339,-320] -329.5 31 602 11 -16 [-319,-300] -309.5 33 625 12 -15 [-299,-280] -289.5 33 660 13 -14 [-279,-260] -269.5 34 678 14 -13 [-259,-240] -249.5 35 694 15 -12 [-239,-220] -229.5 36 710 16 -11 [-219,-200] -209.5 36 720 17 -10 [-199,-180] -189.5 36 720 18 -9 [-179,-160] -169.5 37 726 19 -8 [-159,-140] -149.5 37 740 20 -7 [-139,-120] -129.5 37 740 21 -6 [-119,-100] -109.5 37 740 22 -5 [-99,-80] -89.5 37 740 23 -4 [-79,-60] -69.5 37 740 24 -3 [-59,-40] -49.5 37 740 25 -2 [-39,-20] -29.5 37 740 26 -1 [-19,0] -9.5 37 740 27 0 [1,20] 10.5 37 740 28 1 [21,40] 30.5 37 740 29 2 [41,60] 50.5 37 740 30 3 [61,80] 70.5 37 740 31 4 [81,100] 90.5 37 740 32 5 [101,120] 110.5 37 740 33 6 [121,140] 130.5 37 740 34 7 [141,160] 150.5 37 734 35 8 [161,180] 170.5 36 720 36 9 [181,200] 190.5 36 720 37 10 [201,220] 210.5 36 718 38 11 [221,240] 230.5 35 700 39 12 [241,260] 250.5 35 681 40 13 [261,280] 270.5 34 665 41 14 [281,300] 290.5 33 639 42 15 [301,320] 310.5 31 608 43 16 [321,340] 330.5 30 600 44 17 [341,360] 350.5 30 590 45 18 [361,380] 370.5 29 580 46 19 [381,400] 390.5 29 580 47 20 [401,420] 410.5 29 565 48 21 [421,440] 430.5 27 540 49 22 [441,460] 450.5 27 540 50 23 [461,480] 470.5 27 531 51 24 [481,500] 490.5 26 364 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -509.5 occurrences in window 1 [-519,-500] 11 -489.5 occurrences in window 2 [-499,-480] 12 -469.5 occurrences in window 3 [-479,-460] 13 -449.5 occurrences in window 4 [-459,-440] 14 -429.5 occurrences in window 5 [-439,-420] 15 -409.5 occurrences in window 6 [-419,-400] 16 -389.5 occurrences in window 7 [-399,-380] 17 -369.5 occurrences in window 8 [-379,-360] 18 -349.5 occurrences in window 9 [-359,-340] 19 -329.5 occurrences in window 10 [-339,-320] 20 -309.5 occurrences in window 11 [-319,-300] 21 -289.5 occurrences in window 12 [-299,-280] 22 -269.5 occurrences in window 13 [-279,-260] 23 -249.5 occurrences in window 14 [-259,-240] 24 -229.5 occurrences in window 15 [-239,-220] 25 -209.5 occurrences in window 16 [-219,-200] 26 -189.5 occurrences in window 17 [-199,-180] 27 -169.5 occurrences in window 18 [-179,-160] 28 -149.5 occurrences in window 19 [-159,-140] 29 -129.5 occurrences in window 20 [-139,-120] 30 -109.5 occurrences in window 21 [-119,-100] 31 -89.5 occurrences in window 22 [-99,-80] 32 -69.5 occurrences in window 23 [-79,-60] 33 -49.5 occurrences in window 24 [-59,-40] 34 -29.5 occurrences in window 25 [-39,-20] 35 -9.5 occurrences in window 26 [-19,0] 36 10.5 occurrences in window 27 [1,20] 37 30.5 occurrences in window 28 [21,40] 38 50.5 occurrences in window 29 [41,60] 39 70.5 occurrences in window 30 [61,80] 40 90.5 occurrences in window 31 [81,100] 41 110.5 occurrences in window 32 [101,120] 42 130.5 occurrences in window 33 [121,140] 43 150.5 occurrences in window 34 [141,160] 44 170.5 occurrences in window 35 [161,180] 45 190.5 occurrences in window 36 [181,200] 46 210.5 occurrences in window 37 [201,220] 47 230.5 occurrences in window 38 [221,240] 48 250.5 occurrences in window 39 [241,260] 49 270.5 occurrences in window 40 [261,280] 50 290.5 occurrences in window 41 [281,300] 51 310.5 occurrences in window 42 [301,320] 52 330.5 occurrences in window 43 [321,340] 53 350.5 occurrences in window 44 [341,360] 54 370.5 occurrences in window 45 [361,380] 55 390.5 occurrences in window 46 [381,400] 56 410.5 occurrences in window 47 [401,420] 57 430.5 occurrences in window 48 [421,440] 58 450.5 occurrences in window 49 [441,460] 59 470.5 occurrences in window 50 [461,480] 60 490.5 occurrences in window 51 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 8356 | 85.2 | 50 | 1.4e-03 | 0.0057 | 2.25 | 1 | 36 | 104 | 113 | 115 | 116 | 125 | 138 | 132 | 128 | 142 | 136 | 163 | 167 | 167 | 174 | 172 | 163 | 187 | 203 | 177 | 173 | 178 | 197 | 200 | 186 | 198 | 183 | 194 | 176 | 194 | 193 | 196 | 199 | 189 | 204 | 184 | 196 | 165 | 172 | 179 | 182 | 177 | 153 | 165 | 148 | 145 | 173 | 177 | 164 | 143 | 115 |
| a | a | 7986 | 83.1 | 50 | 2.3e-03 | 0.0091 | 2.04 | 2 | 32 | 125 | 108 | 116 | 103 | 129 | 117 | 112 | 149 | 142 | 166 | 169 | 166 | 182 | 172 | 187 | 177 | 194 | 151 | 200 | 194 | 180 | 208 | 178 | 200 | 181 | 202 | 187 | 186 | 174 | 177 | 185 | 138 | 179 | 187 | 186 | 159 | 181 | 148 | 159 | 150 | 140 | 149 | 139 | 148 | 158 | 116 | 113 | 125 | 155 | 107 |
| g | g | 6974 | 77.8 | 50 | 7.1e-03 | 0.029 | 1.54 | 3 | 31 | 110 | 116 | 120 | 120 | 130 | 123 | 134 | 108 | 139 | 123 | 132 | 155 | 135 | 174 | 163 | 167 | 155 | 160 | 161 | 162 | 170 | 139 | 145 | 145 | 154 | 148 | 151 | 173 | 163 | 161 | 173 | 174 | 164 | 147 | 154 | 165 | 174 | 159 | 164 | 131 | 110 | 134 | 135 | 112 | 104 | 92 | 84 | 86 | 88 | 57 |
| t | t | 8618 | 55.4 | 50 | 2.8e-01 | 1.1 | -0.05 | 4 | 39 | 125 | 143 | 129 | 152 | 136 | 142 | 145 | 161 | 139 | 160 | 168 | 170 | 190 | 170 | 178 | 193 | 170 | 206 | 182 | 191 | 192 | 176 | 197 | 189 | 187 | 187 | 188 | 185 | 189 | 189 | 166 | 209 | 192 | 182 | 196 | 198 | 180 | 202 | 163 | 176 | 181 | 164 | 151 | 172 | 173 | 184 | 166 | 165 | 145 | 85 |
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