; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	17	9	37	0	1	3	3	60	53	50	7	20	14	16
c	12	26	10	2	4	56	0	0	3	1	9	16	18	18
g	11	5	6	60	56	2	1	2	2	4	5	8	15	11
t	22	22	9	0	1	1	58	0	4	7	41	18	15	17
//
; Sites	62
>site_0
ACTGGCTAATTCGG
>site_1
GAAGGCTAATTAAT
>site_2
TTAGCCTAAATAGT
>site_3
TTAGGCTAAATATA
>site_4
CTGGGCTAAATGCA
>site_5
TTAGGCTAAACCAA
>site_6
TTAGCCTAAACCCG
>site_7
CCGGGCTAAATGGA
>site_8
ACAGGCTAAATCGT
>site_9
TGAGGGTAAAGTAG
>site_10
GAAGGCTGAAGACC
>site_11
TGCGGCTAAAGTGA
>site_12
ATAGTCTAAAACAA
>site_13
CAGGGCTAAGTATT
>site_14
GTAGGCTATATTCT
>site_15
TCAGGCTAATCAGG
>site_16
TTTGGCTAAATCGA
>site_17
AGACGGTAAATACC
>site_18
TCTGGCTGAATACC
>site_19
CCACGCAAAATACC
>site_20
CCCGGCTAAAGTTC
>site_21
TCAGGCTAGATCAC
>site_22
CGAGGCTAAACTAC
>site_23
CAAGGCAAATTAAC
>site_24
TTAGGCTAAACCGC
>site_25
GTCGGTTAAATTTT
>site_26
ATAGGCTAAATTGC
>site_27
ACAGGATAAAATTA
>site_28
CCAGGCTAGCTAGG
>site_29
TCTGGCTAAATCGA
>site_30
ATAGCCTAAACAAA
>site_31
GCCGGCTAAATCAT
>site_32
TCAGGCTAAACCCC
>site_33
ATGGGCTATATAGG
>site_34
ACAGGCTAAATCTG
>site_35
TCTGGCTAATTGTT
>site_36
GCCGGCTAAATGCA
>site_37
CCCGGCTAAATTAA
>site_38
GGAGGCTAAATGAA
>site_39
TTAGGCAAAATGCC
>site_40
GCTGGCTAAAAGAC
>site_41
GTAGGCTATATTCT
>site_42
CAGGGCTAAGTATT
>site_43
AATGACTAAATATG
>site_44
GTCGGATAAATATG
>site_45
CCGGGCTAAATTTG
>site_46
TTAGGCTAATTGCA
>site_47
ATCGGCTAAATCTC
>site_48
TACGGATAAATTGT
>site_49
TCCGGCTAAACATT
>site_50
ACTGGCTACATCGC
>site_51
TCAGGCTAAACTCT
>site_52
ATAGGCTATAGTTT
>site_53
TTAGGCTACAATTT
>site_54
TCTGGCTAAGTTAC
>site_55
ACAGGCTAAGAAAG
>site_56
ATAGGCGACATACT
>site_57
ACAGGCTAATATCA
>site_58
TCAGCCTAAATCGC
>site_59
CTAGGCTAAAACCC
>site_60
AAAGGCTAAATACT
>site_61
GAAGGCTAAATTCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	4	11	42	0	0	0	0	0	6	16
c	10	18	0	2	0	0	0	42	17	7
g	13	10	0	40	42	42	0	0	7	7
t	15	3	0	0	0	0	42	0	12	12
//
; Sites	42
>site_0
CCAGGGTCGA
>site_1
TAAGGGTCAA
>site_2
GGAGGGTCTA
>site_3
CAAGGGTCCA
>site_4
GGAGGGTCGA
>site_5
TCAGGGTCCA
>site_6
TCAGGGTCCA
>site_7
GCACGGTCGT
>site_8
TCAGGGTCCA
>site_9
GAAGGGTCTG
>site_10
CCAGGGTCCA
>site_11
CCAGGGTCCA
>site_12
TCAGGGTCCA
>site_13
TGAGGGTCCA
>site_14
GGAGGGTCGG
>site_15
CTAGGGTCTC
>site_16
GGAGGGTCTT
>site_17
AAAGGGTCCC
>site_18
AGAGGGTCTT
>site_19
AAAGGGTCCT
>site_20
ATAGGGTCTC
>site_21
TTAGGGTCTT
>site_22
CAAGGGTCGG
>site_23
GCACGGTCGT
>site_24
TCAGGGTCCA
>site_25
TCAGGGTCCA
>site_26
TCAGGGTCCT
>site_27
CCAGGGTCTG
>site_28
CGAGGGTCAA
>site_29
TGAGGGTCAC
>site_30
GAAGGGTCGT
>site_31
TCAGGGTCCT
>site_32
GGAGGGTCCG
>site_33
TCAGGGTCCT
>site_34
CAAGGGTCTT
>site_35
CAAGGGTCAC
>site_36
TCAGGGTCAT
>site_37
GCAGGGTCAG
>site_38
GAAGGGTCTA
>site_39
GCAGGGTCTC
>site_40
GAAGGGTCCC
>site_41
TGAGGGTCTG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164132_2026-03-30.164132_qGS9No/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2026-03-30.164140
; Job done	2026-03-30.164141
; Seconds	0.13
;	user	0.13
;	system	0.03
;	cuser	0.47
;	csystem	0.09
