position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164711_2026-03-30.164711_1nojY4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Pensub -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164711_2026-03-30.164711_1nojY4/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164711_2026-03-30.164711_1nojY4/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.164711_2026-03-30.164711_1nojY4/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 40 Sum of sequence lengths 36297 Min sequence length 0 Max sequence length 1000 Average sequence length 907 Possible positions 36297 Sequences: # length ID 1 1000 Pensub 2 1000 Pensub 3 706 Pensub 4 1000 Pensub 5 967 Pensub 6 1000 Pensub 7 1000 Pensub 8 1000 Pensub 9 647 Pensub 10 1000 Pensub 11 1000 Pensub 12 888 Pensub 13 1000 Pensub 14 1000 Pensub 15 1000 Pensub 16 1000 Pensub 17 1000 Pensub 18 1000 Pensub 19 467 Pensub 20 1000 Pensub 21 1000 Pensub 22 1000 Pensub 23 254 Pensub 24 544 Pensub 25 955 Pensub 26 1000 Pensub 27 762 Pensub 28 1000 Pensub 29 1000 Pensub 30 1000 Pensub 31 872 Pensub 32 1000 Pensub 33 604 Pensub 34 1000 Pensub 35 1000 Pensub 36 1000 Pensub 37 1000 Pensub 38 1000 Pensub 39 881 Pensub 40 750 Pensub Oligonucleotide statistics: Total occurrences 33493 Position interval parameters: Position interval 20 Number of windows 50 Total positions 36297 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 28 544 2 -24 [-479,-460] -469.5 29 578 3 -23 [-459,-440] -449.5 31 585 4 -22 [-439,-420] -429.5 32 636 5 -21 [-419,-400] -409.5 32 640 6 -20 [-399,-380] -389.5 33 642 7 -19 [-379,-360] -369.5 34 676 8 -18 [-359,-340] -349.5 35 694 9 -17 [-339,-320] -329.5 36 704 10 -16 [-319,-300] -309.5 37 722 11 -15 [-299,-280] -289.5 37 740 12 -14 [-279,-260] -269.5 38 752 13 -13 [-259,-240] -249.5 38 760 14 -12 [-239,-220] -229.5 39 774 15 -11 [-219,-200] -209.5 39 780 16 -10 [-199,-180] -189.5 39 780 17 -9 [-179,-160] -169.5 39 780 18 -8 [-159,-140] -149.5 39 780 19 -7 [-139,-120] -129.5 40 788 20 -6 [-119,-100] -109.5 40 800 21 -5 [-99,-80] -89.5 40 800 22 -4 [-79,-60] -69.5 40 800 23 -3 [-59,-40] -49.5 40 800 24 -2 [-39,-20] -29.5 40 800 25 -1 [-19,0] -9.5 40 800 26 0 [1,20] 10.5 40 800 27 1 [21,40] 30.5 40 800 28 2 [41,60] 50.5 40 800 29 3 [61,80] 70.5 40 800 30 4 [81,100] 90.5 40 800 31 5 [101,120] 110.5 40 800 32 6 [121,140] 130.5 40 786 33 7 [141,160] 150.5 39 780 34 8 [161,180] 170.5 39 780 35 9 [181,200] 190.5 39 780 36 10 [201,220] 210.5 39 780 37 11 [221,240] 230.5 39 773 38 12 [241,260] 250.5 38 760 39 13 [261,280] 270.5 38 752 40 14 [281,300] 290.5 37 740 41 15 [301,320] 310.5 37 722 42 16 [321,340] 330.5 36 703 43 17 [341,360] 350.5 35 692 44 18 [361,380] 370.5 34 674 45 19 [381,400] 390.5 32 640 46 20 [401,420] 410.5 32 640 47 21 [421,440] 430.5 32 636 48 22 [441,460] 450.5 30 584 49 23 [461,480] 470.5 29 577 50 24 [481,500] 490.5 28 543 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 8087 | 94.3 | 49 | 1.1e-04 | 0.00043 | 3.37 | 1 | 115 | 114 | 124 | 134 | 122 | 113 | 142 | 130 | 134 | 135 | 157 | 160 | 161 | 163 | 140 | 152 | 182 | 177 | 169 | 173 | 170 | 161 | 158 | 165 | 197 | 183 | 210 | 191 | 228 | 197 | 176 | 172 | 194 | 179 | 179 | 171 | 184 | 184 | 198 | 174 | 165 | 172 | 157 | 158 | 139 | 142 | 144 | 142 | 171 | 129 |
| a | a | 8743 | 82.4 | 49 | 2.0e-03 | 0.008 | 2.10 | 2 | 106 | 134 | 134 | 149 | 160 | 162 | 172 | 158 | 159 | 176 | 154 | 181 | 190 | 182 | 174 | 187 | 183 | 192 | 186 | 185 | 169 | 197 | 206 | 177 | 171 | 171 | 172 | 180 | 177 | 190 | 188 | 192 | 183 | 163 | 176 | 196 | 193 | 208 | 174 | 194 | 196 | 167 | 179 | 173 | 165 | 177 | 200 | 165 | 141 | 179 |
| t | t | 9162 | 62.3 | 49 | 9.6e-02 | 0.38 | 0.42 | 3 | 127 | 132 | 144 | 158 | 155 | 155 | 153 | 187 | 179 | 187 | 181 | 180 | 164 | 188 | 216 | 192 | 167 | 188 | 188 | 204 | 216 | 188 | 192 | 203 | 205 | 201 | 182 | 200 | 180 | 181 | 213 | 212 | 185 | 207 | 202 | 190 | 193 | 178 | 177 | 208 | 191 | 204 | 199 | 172 | 191 | 175 | 180 | 159 | 181 | 152 |
| g | g | 7501 | 53.8 | 49 | 3.0e-01 | 1.2 | -0.07 | 4 | 116 | 118 | 103 | 115 | 123 | 132 | 129 | 139 | 152 | 144 | 168 | 151 | 165 | 161 | 170 | 169 | 168 | 143 | 165 | 158 | 165 | 174 | 164 | 175 | 147 | 177 | 176 | 169 | 155 | 172 | 163 | 150 | 158 | 166 | 163 | 165 | 163 | 161 | 183 | 162 | 170 | 159 | 137 | 151 | 144 | 146 | 112 | 118 | 84 | 83 |
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