position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 468BrM_3_CancerMetabolism -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1060 Sum of sequence lengths 132097 Min sequence length 0 Max sequence length 837 Average sequence length 124 Possible positions 132097 Oligonucleotide statistics: Total occurrences 127929 Position interval parameters: Position interval 20 Number of windows 42 Total positions 132097 Degrees of freedom 41 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -21 [-419,-400] -409.5 1 19 2 -20 [-399,-380] -389.5 1 20 3 -19 [-379,-360] -369.5 1 20 4 -18 [-359,-340] -349.5 3 34 5 -17 [-339,-320] -329.5 5 89 6 -16 [-319,-300] -309.5 6 110 7 -15 [-299,-280] -289.5 8 148 8 -14 [-279,-260] -269.5 12 212 9 -13 [-259,-240] -249.5 12 240 10 -12 [-239,-220] -229.5 14 262 11 -11 [-219,-200] -209.5 23 364 12 -10 [-199,-180] -189.5 31 546 13 -9 [-179,-160] -169.5 42 737 14 -8 [-159,-140] -149.5 56 986 15 -7 [-139,-120] -129.5 78 1338 16 -6 [-119,-100] -109.5 118 1914 17 -5 [-99,-80] -89.5 205 3120 18 -4 [-79,-60] -69.5 370 5733 19 -3 [-59,-40] -49.5 596 9775 20 -2 [-39,-20] -29.5 1060 19520 21 -1 [-19,0] -9.5 1060 21200 22 0 [1,20] 10.5 1060 21200 23 1 [21,40] 30.5 1060 19446 24 2 [41,60] 50.5 582 9532 25 3 [61,80] 70.5 362 5568 26 4 [81,100] 90.5 196 3032 27 5 [101,120] 110.5 113 1874 28 6 [121,140] 130.5 76 1319 29 7 [141,160] 150.5 56 975 30 8 [161,180] 170.5 41 723 31 9 [181,200] 190.5 31 541 32 10 [201,220] 210.5 21 354 33 11 [221,240] 230.5 14 261 34 12 [241,260] 250.5 12 240 35 13 [261,280] 270.5 12 210 36 14 [281,300] 290.5 8 148 37 15 [301,320] 310.5 6 110 38 16 [321,340] 330.5 5 87 39 17 [341,360] 350.5 3 32 40 18 [361,380] 370.5 1 20 41 19 [381,400] 390.5 1 20 42 20 [401,420] 410.5 1 18 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -409.5 occurrences in window 1 [-419,-400] 11 -389.5 occurrences in window 2 [-399,-380] 12 -369.5 occurrences in window 3 [-379,-360] 13 -349.5 occurrences in window 4 [-359,-340] 14 -329.5 occurrences in window 5 [-339,-320] 15 -309.5 occurrences in window 6 [-319,-300] 16 -289.5 occurrences in window 7 [-299,-280] 17 -269.5 occurrences in window 8 [-279,-260] 18 -249.5 occurrences in window 9 [-259,-240] 19 -229.5 occurrences in window 10 [-239,-220] 20 -209.5 occurrences in window 11 [-219,-200] 21 -189.5 occurrences in window 12 [-199,-180] 22 -169.5 occurrences in window 13 [-179,-160] 23 -149.5 occurrences in window 14 [-159,-140] 24 -129.5 occurrences in window 15 [-139,-120] 25 -109.5 occurrences in window 16 [-119,-100] 26 -89.5 occurrences in window 17 [-99,-80] 27 -69.5 occurrences in window 18 [-79,-60] 28 -49.5 occurrences in window 19 [-59,-40] 29 -29.5 occurrences in window 20 [-39,-20] 30 -9.5 occurrences in window 21 [-19,0] 31 10.5 occurrences in window 22 [1,20] 32 30.5 occurrences in window 23 [21,40] 33 50.5 occurrences in window 24 [41,60] 34 70.5 occurrences in window 25 [61,80] 35 90.5 occurrences in window 26 [81,100] 36 110.5 occurrences in window 27 [101,120] 37 130.5 occurrences in window 28 [121,140] 38 150.5 occurrences in window 29 [141,160] 39 170.5 occurrences in window 30 [161,180] 40 190.5 occurrences in window 31 [181,200] 41 210.5 occurrences in window 32 [201,220] 42 230.5 occurrences in window 33 [221,240] 43 250.5 occurrences in window 34 [241,260] 44 270.5 occurrences in window 35 [261,280] 45 290.5 occurrences in window 36 [281,300] 46 310.5 occurrences in window 37 [301,320] 47 330.5 occurrences in window 38 [321,340] 48 350.5 occurrences in window 39 [341,360] 49 370.5 occurrences in window 40 [361,380] 50 390.5 occurrences in window 41 [381,400] 51 410.5 occurrences in window 42 [401,420]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 27901 | 241.5 | 41 | 3.1e-30 | 1.2e-29 | 28.91 | 1 | 2 | 3 | 3 | 13 | 22 | 32 | 42 | 70 | 64 | 65 | 118 | 153 | 209 | 259 | 352 | 459 | 731 | 1256 | 2058 | 3982 | 4227 | 4160 | 3970 | 2058 | 1210 | 707 | 428 | 282 | 251 | 195 | 148 | 100 | 76 | 63 | 46 | 29 | 23 | 12 | 7 | 6 | 7 | 3 |
| g | g | 28504 | 191.7 | 41 | 2.3e-21 | 9.4e-21 | 20.03 | 2 | 7 | 4 | 2 | 4 | 20 | 20 | 34 | 55 | 62 | 65 | 76 | 128 | 183 | 267 | 330 | 460 | 749 | 1292 | 2063 | 4036 | 4383 | 4312 | 4090 | 2051 | 1272 | 674 | 464 | 366 | 271 | 178 | 143 | 98 | 74 | 76 | 69 | 47 | 33 | 19 | 8 | 6 | 6 | 7 |
| t | t | 36309 | 155.1 | 41 | 3.6e-15 | 1.4e-14 | 13.84 | 3 | 2 | 7 | 5 | 8 | 24 | 27 | 29 | 41 | 62 | 65 | 94 | 119 | 150 | 200 | 311 | 484 | 792 | 1530 | 2750 | 5486 | 5896 | 6048 | 5596 | 2657 | 1483 | 802 | 473 | 323 | 211 | 173 | 134 | 71 | 61 | 50 | 37 | 27 | 30 | 35 | 6 | 3 | 4 | 3 |
| a | a | 35215 | 89.4 | 41 | 1.9e-05 | 7.5e-05 | 4.12 | 4 | 8 | 6 | 10 | 9 | 23 | 31 | 43 | 46 | 52 | 67 | 76 | 146 | 179 | 240 | 320 | 458 | 775 | 1497 | 2628 | 5375 | 5783 | 5808 | 5292 | 2536 | 1427 | 718 | 442 | 327 | 242 | 177 | 116 | 85 | 50 | 51 | 58 | 45 | 24 | 21 | 11 | 5 | 3 | 5 |
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