compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html html_index $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html prefix $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf file1 1 11 359 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv3_m2 | MA2125.1 | oligos_6nt_mkv3_m2 | Zfp809 | 0.874 | 0.715 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m2 | MA2341.1 | oligos_6nt_mkv3_m2 | FEZF2 | 0.834 | 0.607 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 3 |
| oligos_6nt_mkv3_m2 | MA1629.2 | oligos_6nt_mkv3_m2 | Zic2 | 0.740 | 0.493 | 11 | 9 | 8 | 12 | 0.6667 | 0.7273 | 0.8889 | D | 3 |
| oligos_6nt_mkv3_m2 | MA1116.2 | oligos_6nt_mkv3_m2 | RBPJ | 0.807 | 0.440 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 1 |
| oligos_6nt_mkv3_m2 | MA1997.2 | oligos_6nt_mkv3_m2 | Olig2 | 0.800 | 0.437 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv3_m2 | MA0633.3 | oligos_6nt_mkv3_m2 | Twist2 | 0.800 | 0.436 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 5 |
| oligos_6nt_mkv3_m2 | MA1993.2 | oligos_6nt_mkv3_m2 | Neurod2 | 0.800 | 0.436 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv3_m2 | MA1635.2 | oligos_6nt_mkv3_m2 | BHLHE22 | 0.798 | 0.435 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv3_m2 | MA2330.1 | oligos_6nt_mkv3_m2 | ZBTB24 | 0.702 | 0.432 | 11 | 10 | 8 | 13 | 0.6154 | 0.7273 | 0.8000 | D | 3 |
| oligos_6nt_mkv3_m2 | MA0521.3 | oligos_6nt_mkv3_m2 | Tcf12 | 0.790 | 0.431 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 5 |
| oligos_6nt_mkv3_m2 | MA0056.3 | oligos_6nt_mkv3_m2 | MZF1 | 0.717 | 0.418 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | -1 |
| oligos_6nt_mkv3_m2 | MA0697.3 | oligos_6nt_mkv3_m2 | Zic3 | 0.826 | 0.413 | 11 | 7 | 6 | 12 | 0.5000 | 0.5455 | 0.8571 | D | 5 |
| oligos_6nt_mkv3_m2 | MA1628.2 | oligos_6nt_mkv3_m2 | Zic1::Zic2 | 0.826 | 0.413 | 11 | 7 | 6 | 12 | 0.5000 | 0.5455 | 0.8571 | D | 5 |
| oligos_6nt_mkv3_m2 | MA0734.4 | oligos_6nt_mkv3_m2 | Gli2 | 0.761 | 0.410 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | D | -2 |
| oligos_6nt_mkv3_m2 | MA1573.2 | oligos_6nt_mkv3_m2 | Thap11 | 0.856 | 0.403 | 11 | 14 | 8 | 17 | 0.4706 | 0.7273 | 0.5714 | D | -6 |
Host name rsat Job started 2026-03-30.203848 Job done 2026-03-30.203858 Seconds 2.16 user 2.16 system 0.49 cuser 7.26 ; csystem 0.54