One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift6 ; 16 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift6 (oligos_6nt_mkv3_m2)    
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=11; shift=6; ncol=17; ------amwCCCAGChm
; Alignment reference
a	0	0	0	0	0	0	135	92	158	7	12	3	314	4	11	116	95
c	0	0	0	0	0	0	71	97	46	342	325	339	22	5	329	94	121
g	0	0	0	0	0	0	88	82	54	5	10	7	15	346	5	53	69
t	0	0	0	0	0	0	65	88	101	5	12	10	8	4	14	96	74
MA2125.1_shift7 (Zfp809)
; oligos_6nt_mkv3_m2 versus MA2125.1 (Zfp809); m=1/15; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.714751; -------wTCCCAGCc-
; cor=; Ncor=
a	0	0	0	0	0	0	0	828.0	23.0	15.0	20.0	10.0	1529.0	32.0	287.0	217.0	0
c	0	0	0	0	0	0	0	66.0	41.0	1607.0	1610.0	1621.0	26.0	35.0	1218.0	1091.0	0
g	0	0	0	0	0	0	0	81.0	23.0	18.0	14.0	16.0	73.0	1572.0	99.0	115.0	0
t	0	0	0	0	0	0	0	690.0	1578.0	25.0	21.0	18.0	37.0	26.0	61.0	242.0	0
MA2341.1_shift9 (FEZF2)
; oligos_6nt_mkv3_m2 versus MA2341.1 (FEZF2); m=2/15; ncol2=8; w=0; offset=3; strand=D; shift=9; score=0.606541; ---------CCCAGCCT
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	17.0	5.0	4.0	231.0	6.0	8.0	7.0	14.0
c	0	0	0	0	0	0	0	0	0	202.0	206.0	258.0	15.0	8.0	224.0	247.0	10.0
g	0	0	0	0	0	0	0	0	0	10.0	9.0	0.0	14.0	251.0	28.0	2.0	8.0
t	0	0	0	0	0	0	0	0	0	36.0	45.0	3.0	5.0	0.0	5.0	9.0	233.0
MA1629.2_shift9 (Zic2)
; oligos_6nt_mkv3_m2 versus MA1629.2 (Zic2); m=3/15; ncol2=9; w=0; offset=3; strand=D; shift=9; score=0.493329; ---------CaCAGCAG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	1161.0	6888.0	135.0	11074.0	140.0	80.0	10625.0	192.0
c	0	0	0	0	0	0	0	0	0	9933.0	1765.0	11476.0	391.0	228.0	11272.0	118.0	133.0
g	0	0	0	0	0	0	0	0	0	585.0	829.0	188.0	186.0	11484.0	269.0	735.0	11184.0
t	0	0	0	0	0	0	0	0	0	240.0	2437.0	120.0	268.0	67.0	298.0	441.0	410.0
MA1116.2_rc_shift7 (RBPJ_rc)
; oligos_6nt_mkv3_m2 versus MA1116.2_rc (RBPJ_rc); m=4/15; ncol2=6; w=0; offset=1; strand=R; shift=7; score=0.440268; -------TTCCCA----
; cor=; Ncor=
a	0	0	0	0	0	0	0	4.0	29.0	78.0	60.0	1.0	2386.0	0	0	0	0
c	0	0	0	0	0	0	0	1.0	4.0	2309.0	2313.0	2341.0	2.0	0	0	0	0
g	0	0	0	0	0	0	0	15.0	0.0	8.0	20.0	25.0	12.0	0	0	0	0
t	0	0	0	0	0	0	0	2382.0	2369.0	7.0	9.0	35.0	2.0	0	0	0	0
MA1997.2_shift11 (Olig2)
; oligos_6nt_mkv3_m2 versus MA1997.2 (Olig2); m=5/15; ncol2=6; w=0; offset=5; strand=D; shift=11; score=0.436568; -----------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	10.0	59733.0	14.0	41.0	0.0	50.0
c	0	0	0	0	0	0	0	0	0	0	0	60968.0	668.0	18.0	61069.0	741.0	114.0
g	0	0	0	0	0	0	0	0	0	0	0	114.0	741.0	61069.0	18.0	668.0	60968.0
t	0	0	0	0	0	0	0	0	0	0	0	50.0	0.0	41.0	14.0	59733.0	10.0
MA0633.3_rc_shift11 (Twist2_rc)
; oligos_6nt_mkv3_m2 versus MA0633.3_rc (Twist2_rc); m=6/15; ncol2=6; w=0; offset=5; strand=R; shift=11; score=0.436209; -----------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	15.0	48918.0	9.0	21.0	0.0	60.0
c	0	0	0	0	0	0	0	0	0	0	0	49473.0	342.0	16.0	49583.0	369.0	81.0
g	0	0	0	0	0	0	0	0	0	0	0	81.0	369.0	49583.0	16.0	345.0	49473.0
t	0	0	0	0	0	0	0	0	0	0	0	60.0	0.0	21.0	9.0	48915.0	15.0
MA1993.2_shift11 (Neurod2)
; oligos_6nt_mkv3_m2 versus MA1993.2 (Neurod2); m=7/15; ncol2=6; w=0; offset=5; strand=D; shift=11; score=0.436145; -----------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	14.0	53280.0	8.0	17.0	0.0	39.0
c	0	0	0	0	0	0	0	0	0	0	0	53913.0	310.0	15.0	53984.0	434.0	58.0
g	0	0	0	0	0	0	0	0	0	0	0	58.0	434.0	53984.0	15.0	310.0	53913.0
t	0	0	0	0	0	0	0	0	0	0	0	39.0	0.0	17.0	8.0	53280.0	14.0
MA1635.2_shift11 (BHLHE22)
; oligos_6nt_mkv3_m2 versus MA1635.2 (BHLHE22); m=8/15; ncol2=6; w=0; offset=5; strand=D; shift=11; score=0.435372; -----------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	0.0	18267.0	1.0	14.0	0.0	14.0
c	0	0	0	0	0	0	0	0	0	0	0	18331.0	37.0	53.0	18288.0	52.0	15.0
g	0	0	0	0	0	0	0	0	0	0	0	11.0	52.0	18288.0	53.0	37.0	18327.0
t	0	0	0	0	0	0	0	0	0	0	0	14.0	0.0	14.0	1.0	18267.0	0.0
MA2330.1_shift9 (ZBTB24)
; oligos_6nt_mkv3_m2 versus MA2330.1 (ZBTB24); m=9/15; ncol2=10; w=0; offset=3; strand=D; shift=9; score=0.431829; ---------cCCAGGAC
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	65.0	58.0	28.0	667.0	25.0	49.0	629.0	41.0
c	0	0	0	0	0	0	0	0	0	534.0	662.0	750.0	53.0	35.0	67.0	70.0	705.0
g	0	0	0	0	0	0	0	0	0	127.0	47.0	24.0	62.0	738.0	677.0	57.0	49.0
t	0	0	0	0	0	0	0	0	0	102.0	61.0	26.0	46.0	30.0	35.0	72.0	33.0
MA0521.3_shift11 (Tcf12)
; oligos_6nt_mkv3_m2 versus MA0521.3 (Tcf12); m=10/15; ncol2=6; w=0; offset=5; strand=D; shift=11; score=0.431104; -----------CAGCTG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	367.0	72283.0	836.0	1565.0	341.0	549.0
c	0	0	0	0	0	0	0	0	0	0	0	72674.0	739.0	1814.0	69780.0	632.0	402.0
g	0	0	0	0	0	0	0	0	0	0	0	404.0	632.0	69780.0	1814.0	738.0	72670.0
t	0	0	0	0	0	0	0	0	0	0	0	550.0	341.0	1565.0	836.0	72284.0	374.0
MA0056.3_shift5 (MZF1)
; oligos_6nt_mkv3_m2 versus MA0056.3 (MZF1); m=11/15; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score=0.418211; -----AATCCCCA----
; cor=; Ncor=
a	0	0	0	0	0	5855.0	7149.0	106.0	100.0	135.0	111.0	117.0	6036.0	0	0	0	0
c	0	0	0	0	0	1016.0	426.0	56.0	7949.0	7939.0	7919.0	7673.0	611.0	0	0	0	0
g	0	0	0	0	0	999.0	385.0	98.0	100.0	54.0	58.0	83.0	484.0	0	0	0	0
t	0	0	0	0	0	372.0	282.0	7982.0	93.0	114.0	154.0	369.0	1111.0	0	0	0	0
MA0697.3_shift11 (Zic3)
; oligos_6nt_mkv3_m2 versus MA0697.3 (Zic3); m=12/15; ncol2=7; w=0; offset=5; strand=D; shift=11; score=0.412908; -----------CAGCAG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	345.0	23947.0	331.0	354.0	22980.0	393.0
c	0	0	0	0	0	0	0	0	0	0	0	25035.0	872.0	670.0	24272.0	568.0	500.0
g	0	0	0	0	0	0	0	0	0	0	0	460.0	759.0	24907.0	756.0	1768.0	24314.0
t	0	0	0	0	0	0	0	0	0	0	0	334.0	596.0	266.0	792.0	858.0	967.0
MA1628.2_shift11 (Zic1::Zic2)
; oligos_6nt_mkv3_m2 versus MA1628.2 (Zic1::Zic2); m=13/15; ncol2=7; w=0; offset=5; strand=D; shift=11; score=0.412843; -----------CAGCAG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	0	29.0	9238.0	96.0	75.0	8950.0	11.0
c	0	0	0	0	0	0	0	0	0	0	0	9594.0	384.0	195.0	9293.0	311.0	512.0
g	0	0	0	0	0	0	0	0	0	0	0	106.0	266.0	9527.0	96.0	627.0	9279.0
t	0	0	0	0	0	0	0	0	0	0	0	163.0	4.0	74.0	428.0	4.0	90.0
MA0734.4_shift4 (Gli2)
; oligos_6nt_mkv3_m2 versus MA0734.4 (Gli2); m=14/15; ncol2=9; w=-2; offset=-2; strand=D; shift=4; score=0.409914; ----GACCACCCA----
; cor=; Ncor=
a	0	0	0	0	60.0	1920.0	44.0	8.0	2216.0	9.0	313.0	59.0	2101.0	0	0	0	0
c	0	0	0	0	96.0	227.0	2404.0	2464.0	40.0	2451.0	2145.0	2288.0	85.0	0	0	0	0
g	0	0	0	0	2251.0	337.0	27.0	13.0	82.0	12.0	20.0	77.0	193.0	0	0	0	0
t	0	0	0	0	85.0	8.0	17.0	7.0	154.0	20.0	14.0	68.0	113.0	0	0	0	0
MA1573.2_shift0 (Thap11)
; oligos_6nt_mkv3_m2 versus MA1573.2 (Thap11); m=15/15; ncol2=14; w=-6; offset=-6; strand=D; shift=0; score=0.402665; ACTACAabTCCCAg---
; cor=; Ncor=
a	588.0	20.0	5.0	627.0	4.0	609.0	414.0	70.0	18.0	5.0	8.0	9.0	475.0	74.0	0	0	0
c	38.0	603.0	39.0	17.0	639.0	13.0	46.0	209.0	20.0	631.0	642.0	622.0	16.0	68.0	0	0	0
g	20.0	18.0	6.0	10.0	9.0	29.0	56.0	165.0	19.0	2.0	5.0	10.0	147.0	421.0	0	0	0
t	14.0	19.0	610.0	6.0	8.0	9.0	144.0	216.0	603.0	22.0	5.0	19.0	22.0	97.0	0	0	0