/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf
		file1	1	15	291
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m3 MA1961.2 oligos_6nt_mkv3_m3 PATZ1 0.898 0.659 15 11 11 15 0.7333 0.7333 1.0000 R 3
oligos_6nt_mkv3_m3 MA2328.1 oligos_6nt_mkv3_m3 ZBED4 0.949 0.633 15 10 10 15 0.6667 0.6667 1.0000 D 0
oligos_6nt_mkv3_m3 MA0746.3 oligos_6nt_mkv3_m3 SP3 0.815 0.598 15 11 11 15 0.7333 0.7333 1.0000 D 3
oligos_6nt_mkv3_m3 MA0599.1 oligos_6nt_mkv3_m3 KLF5 0.877 0.584 15 10 10 15 0.6667 0.6667 1.0000 D 3
oligos_6nt_mkv3_m3 MA0741.1 oligos_6nt_mkv3_m3 KLF16 0.790 0.579 15 11 11 15 0.7333 0.7333 1.0000 D 3
oligos_6nt_mkv3_m3 MA0742.2 oligos_6nt_mkv3_m3 KLF12 0.933 0.560 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA1564.2 oligos_6nt_mkv3_m3 SP9 0.828 0.552 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m3 MA0685.2 oligos_6nt_mkv3_m3 SP4 0.918 0.551 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA0747.2 oligos_6nt_mkv3_m3 SP8 0.749 0.550 15 11 11 15 0.7333 0.7333 1.0000 D 4
oligos_6nt_mkv3_m3 MA1511.2 oligos_6nt_mkv3_m3 KLF10 0.916 0.550 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA0740.2 oligos_6nt_mkv3_m3 KLF14 0.914 0.548 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA0516.3 oligos_6nt_mkv3_m3 SP2 0.914 0.548 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA1653.2 oligos_6nt_mkv3_m3 ZNF148 0.816 0.544 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m3 MA0079.5 oligos_6nt_mkv3_m3 SP1 0.897 0.538 15 9 9 15 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv3_m3 MA1630.3 oligos_6nt_mkv3_m3 ZNF281 0.788 0.526 15 10 10 15 0.6667 0.6667 1.0000 R 4
oligos_6nt_mkv3_m3 MA1513.2 oligos_6nt_mkv3_m3 KLF15 0.974 0.519 15 8 8 15 0.5333 0.5333 1.0000 D 4
oligos_6nt_mkv3_m3 MA1959.2 oligos_6nt_mkv3_m3 KLF7 0.967 0.515 15 8 8 15 0.5333 0.5333 1.0000 R 4
oligos_6nt_mkv3_m3 MA1516.2 oligos_6nt_mkv3_m3 KLF3 0.768 0.512 15 10 10 15 0.6667 0.6667 1.0000 D 2
oligos_6nt_mkv3_m3 MA1512.2 oligos_6nt_mkv3_m3 KLF11 0.761 0.507 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m3 MA0753.3 oligos_6nt_mkv3_m3 ZNF740 0.759 0.506 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m3 MA0493.3 oligos_6nt_mkv3_m3 KLF1 0.942 0.502 15 8 8 15 0.5333 0.5333 1.0000 R 4
oligos_6nt_mkv3_m3 MA1515.2 oligos_6nt_mkv3_m3 KLF2 0.886 0.473 15 8 8 15 0.5333 0.5333 1.0000 D 4
oligos_6nt_mkv3_m3 MA1517.2 oligos_6nt_mkv3_m3 KLF6 0.766 0.459 15 9 9 15 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv3_m3 MA0039.5 oligos_6nt_mkv3_m3 KLF4 0.845 0.451 15 8 8 15 0.5333 0.5333 1.0000 D 4
oligos_6nt_mkv3_m3 MA0162.5 oligos_6nt_mkv3_m3 EGR1 0.761 0.428 15 10 9 16 0.5625 0.6000 0.9000 D 6
oligos_6nt_mkv3_m3 MA1522.2 oligos_6nt_mkv3_m3 MAZ 0.798 0.426 15 8 8 15 0.5333 0.5333 1.0000 D 4
oligos_6nt_mkv3_m3 MA0733.2 oligos_6nt_mkv3_m3 EGR4 0.774 0.410 15 11 9 17 0.5294 0.6000 0.8182 D 6
oligos_6nt_mkv3_m3 MA0732.2 oligos_6nt_mkv3_m3 EGR3 0.758 0.401 15 11 9 17 0.5294 0.6000 0.8182 D 6 
 Host name	rsat
 Job started	2026-03-30.203858
 Job done	2026-03-30.203909
 Seconds	1.66
	user	1.66
	system	0.48
	cuser	7.76
;	csystem	0.85