One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_6nt_mkv3_m3/peak-motifs_oligos_6nt_mkv3_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 29 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; ssCgCCCCGCCCsss ; Alignment reference a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_6nt_mkv3_m3 versus MA1961.2_rc (PATZ1_rc); m=1/28; ncol2=11; w=0; offset=3; strand=R; shift=3; score=0.658772; ---sCCCCkCCCCs- ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0

MA2328.1_shift0 (ZBED4)
; oligos_6nt_mkv3_m3 versus MA2328.1 (ZBED4); m=2/28; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.632655; CcCGCyCCGC----- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0 0

MA0746.3_shift3 (SP3)
; oligos_6nt_mkv3_m3 versus MA0746.3 (SP3); m=3/28; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.597554; ---rCCACGCCCmC- ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0

MA0599.1_shift3 (KLF5)
; oligos_6nt_mkv3_m3 versus MA0599.1 (KLF5); m=4/28; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.584472; ---gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA0741.1_shift3 (KLF16)
; oligos_6nt_mkv3_m3 versus MA0741.1 (KLF16); m=5/28; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.579178; ---gmCMCgCCCMC- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_6nt_mkv3_m3 versus MA0742.2_rc (KLF12_rc); m=6/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.559934; ----CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA1564.2_shift4 (SP9)
; oligos_6nt_mkv3_m3 versus MA1564.2 (SP9); m=7/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.552271; ----cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA0685.2_rc_shift4 (SP4_rc)
; oligos_6nt_mkv3_m3 versus MA0685.2_rc (SP4_rc); m=8/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.550988; ----CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0747.2_shift4 (SP8)
; oligos_6nt_mkv3_m3 versus MA0747.2 (SP8); m=9/28; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.549572; ----mCACgCCCmCy ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_6nt_mkv3_m3 versus MA1511.2_rc (KLF10_rc); m=10/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.549562; ----CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_6nt_mkv3_m3 versus MA0740.2_rc (KLF14_rc); m=11/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.548378; ----CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA0516.3_rc_shift4 (SP2_rc)
; oligos_6nt_mkv3_m3 versus MA0516.3_rc (SP2_rc); m=12/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.548197; ----cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA1653.2_shift4 (ZNF148)
; oligos_6nt_mkv3_m3 versus MA1653.2 (ZNF148); m=13/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.543971; ----CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0079.5_rc_shift4 (SP1_rc)
; oligos_6nt_mkv3_m3 versus MA0079.5_rc (SP1_rc); m=14/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.538157; ----CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA1630.3_rc_shift4 (ZNF281_rc)
; oligos_6nt_mkv3_m3 versus MA1630.3_rc (ZNF281_rc); m=15/28; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.525646; ----CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0

MA1513.2_shift4 (KLF15)
; oligos_6nt_mkv3_m3 versus MA1513.2 (KLF15); m=16/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.519215; ----cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_6nt_mkv3_m3 versus MA1959.2_rc (KLF7_rc); m=17/28; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.515481; ----CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA1516.2_shift2 (KLF3)
; oligos_6nt_mkv3_m3 versus MA1516.2 (KLF3); m=18/28; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.512163; --grCCrCGCCC--- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0

MA1512.2_shift4 (KLF11)
; oligos_6nt_mkv3_m3 versus MA1512.2 (KLF11); m=19/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.507124; ----cCACGCCCmC- ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0

MA0753.3_shift4 (ZNF740)
; oligos_6nt_mkv3_m3 versus MA0753.3 (ZNF740); m=20/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.505947; ----CCCCCCCCAc- ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_6nt_mkv3_m3 versus MA0493.3_rc (KLF1_rc); m=21/28; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.502357; ----CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1515.2_shift4 (KLF2)
; oligos_6nt_mkv3_m3 versus MA1515.2 (KLF2); m=22/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.47261; ----CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA1517.2_shift4 (KLF6)
; oligos_6nt_mkv3_m3 versus MA1517.2 (KLF6); m=23/28; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.459465; ----cCACRCCCm-- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0

MA0039.5_shift4 (KLF4)
; oligos_6nt_mkv3_m3 versus MA0039.5 (KLF4); m=24/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.450733; ----CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA0162.5_shift6 (EGR1)
; oligos_6nt_mkv3_m3 versus MA0162.5 (EGR1); m=25/28; ncol2=10; w=0; offset=6; strand=D; shift=6; score=0.428341; ------mCGCCCACg ; cor=; Ncor= a 0 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0

MA1522.2_shift4 (MAZ)
; oligos_6nt_mkv3_m3 versus MA1522.2 (MAZ); m=26/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.425584; ----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA0733.2_shift6 (EGR4)
; oligos_6nt_mkv3_m3 versus MA0733.2 (EGR4); m=27/28; ncol2=11; w=0; offset=6; strand=D; shift=6; score=0.409817; ------mCGCCCACG ; cor=; Ncor= a 0 0 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0

MA0732.2_shift6 (EGR3)
; oligos_6nt_mkv3_m3 versus MA0732.2 (EGR3); m=28/28; ncol2=11; w=0; offset=6; strand=D; shift=6; score=0.401317; ------mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; ssCgCCCCGCCCsss ; Alignment reference a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_6nt_mkv3_m3 versus MA1961.2_rc (PATZ1_rc); m=1/28; ncol2=11; w=0; offset=3; strand=R; shift=3; score=0.658772; ---sCCCCkCCCCs- ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0
MA2328.1_shift0 (ZBED4)				; oligos_6nt_mkv3_m3 versus MA2328.1 (ZBED4); m=2/28; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.632655; CcCGCyCCGC----- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0 0
MA0746.3_shift3 (SP3)				; oligos_6nt_mkv3_m3 versus MA0746.3 (SP3); m=3/28; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.597554; ---rCCACGCCCmC- ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0
MA0599.1_shift3 (KLF5)				; oligos_6nt_mkv3_m3 versus MA0599.1 (KLF5); m=4/28; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.584472; ---gCCMCrCCCh-- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA0741.1_shift3 (KLF16)				; oligos_6nt_mkv3_m3 versus MA0741.1 (KLF16); m=5/28; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.579178; ---gmCMCgCCCMC- ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_6nt_mkv3_m3 versus MA0742.2_rc (KLF12_rc); m=6/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.559934; ----CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA1564.2_shift4 (SP9)				; oligos_6nt_mkv3_m3 versus MA1564.2 (SP9); m=7/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.552271; ----cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA0685.2_rc_shift4 (SP4_rc)				; oligos_6nt_mkv3_m3 versus MA0685.2_rc (SP4_rc); m=8/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.550988; ----CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0747.2_shift4 (SP8)				; oligos_6nt_mkv3_m3 versus MA0747.2 (SP8); m=9/28; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.549572; ----mCACgCCCmCy ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_6nt_mkv3_m3 versus MA1511.2_rc (KLF10_rc); m=10/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.549562; ----CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_6nt_mkv3_m3 versus MA0740.2_rc (KLF14_rc); m=11/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.548378; ----CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA0516.3_rc_shift4 (SP2_rc)				; oligos_6nt_mkv3_m3 versus MA0516.3_rc (SP2_rc); m=12/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.548197; ----cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA1653.2_shift4 (ZNF148)				; oligos_6nt_mkv3_m3 versus MA1653.2 (ZNF148); m=13/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.543971; ----CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0079.5_rc_shift4 (SP1_rc)				; oligos_6nt_mkv3_m3 versus MA0079.5_rc (SP1_rc); m=14/28; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.538157; ----CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA1630.3_rc_shift4 (ZNF281_rc)				; oligos_6nt_mkv3_m3 versus MA1630.3_rc (ZNF281_rc); m=15/28; ncol2=10; w=0; offset=4; strand=R; shift=4; score=0.525646; ----CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0
MA1513.2_shift4 (KLF15)				; oligos_6nt_mkv3_m3 versus MA1513.2 (KLF15); m=16/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.519215; ----cCCCGCCC--- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_6nt_mkv3_m3 versus MA1959.2_rc (KLF7_rc); m=17/28; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.515481; ----CcMCGCCC--- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA1516.2_shift2 (KLF3)				; oligos_6nt_mkv3_m3 versus MA1516.2 (KLF3); m=18/28; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.512163; --grCCrCGCCC--- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0
MA1512.2_shift4 (KLF11)				; oligos_6nt_mkv3_m3 versus MA1512.2 (KLF11); m=19/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.507124; ----cCACGCCCmC- ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0
MA0753.3_shift4 (ZNF740)				; oligos_6nt_mkv3_m3 versus MA0753.3 (ZNF740); m=20/28; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.505947; ----CCCCCCCCAc- ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_6nt_mkv3_m3 versus MA0493.3_rc (KLF1_rc); m=21/28; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.502357; ----CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1515.2_shift4 (KLF2)				; oligos_6nt_mkv3_m3 versus MA1515.2 (KLF2); m=22/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.47261; ----CCmCrCCC--- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA1517.2_shift4 (KLF6)				; oligos_6nt_mkv3_m3 versus MA1517.2 (KLF6); m=23/28; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.459465; ----cCACRCCCm-- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0
MA0039.5_shift4 (KLF4)				; oligos_6nt_mkv3_m3 versus MA0039.5 (KLF4); m=24/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.450733; ----CCCCACCC--- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA0162.5_shift6 (EGR1)				; oligos_6nt_mkv3_m3 versus MA0162.5 (EGR1); m=25/28; ncol2=10; w=0; offset=6; strand=D; shift=6; score=0.428341; ------mCGCCCACg ; cor=; Ncor= a 0 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0
MA1522.2_shift4 (MAZ)				; oligos_6nt_mkv3_m3 versus MA1522.2 (MAZ); m=26/28; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.425584; ----CCCCTCCc--- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0733.2_shift6 (EGR4)				; oligos_6nt_mkv3_m3 versus MA0733.2 (EGR4); m=27/28; ncol2=11; w=0; offset=6; strand=D; shift=6; score=0.409817; ------mCGCCCACG ; cor=; Ncor= a 0 0 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0
MA0732.2_shift6 (EGR3)				; oligos_6nt_mkv3_m3 versus MA0732.2 (EGR3); m=28/28; ncol2=11; w=0; offset=6; strand=D; shift=6; score=0.401317; ------mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0