/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m2/peak-motifs_oligos_7nt_mkv4_m2.tf
		file1	1	13	173
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m2 MA1720.2 oligos_7nt_mkv4_m2 ZNF85 0.747 0.587 13 12 11 14 0.7857 0.8462 0.9167 D 2
oligos_7nt_mkv4_m2 MA0883.2 oligos_7nt_mkv4_m2 Dmbx1 0.892 0.574 13 10 9 14 0.6429 0.6923 0.9000 D -1
oligos_7nt_mkv4_m2 MA0019.2 oligos_7nt_mkv4_m2 Ddit3::Cebpa 0.741 0.570 13 10 10 13 0.7692 0.7692 1.0000 R 2
oligos_7nt_mkv4_m2 MA1547.2 oligos_7nt_mkv4_m2 PITX2 0.876 0.539 13 8 8 13 0.6154 0.6154 1.0000 R 2
oligos_7nt_mkv4_m2 MA0712.3 oligos_7nt_mkv4_m2 OTX2 0.997 0.537 13 7 7 13 0.5385 0.5385 1.0000 D 2
oligos_7nt_mkv4_m2 MA0056.3 oligos_7nt_mkv4_m2 MZF1 0.787 0.484 13 8 8 13 0.6154 0.6154 1.0000 R 0
oligos_7nt_mkv4_m2 MA0467.3 oligos_7nt_mkv4_m2 Crx 0.999 0.461 13 6 6 13 0.4615 0.4615 1.0000 D 3
oligos_7nt_mkv4_m2 MA0682.3 oligos_7nt_mkv4_m2 PITX1 0.997 0.460 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA0714.2 oligos_7nt_mkv4_m2 PITX3 0.990 0.457 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA0648.2 oligos_7nt_mkv4_m2 GSC 0.985 0.455 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA0891.2 oligos_7nt_mkv4_m2 GSC2 0.981 0.453 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA0711.2 oligos_7nt_mkv4_m2 OTX1 0.977 0.451 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA0629.2 oligos_7nt_mkv4_m2 Rhox11 0.737 0.421 13 9 8 14 0.5714 0.6154 0.8889 R 5
oligos_7nt_mkv4_m2 MA0719.2 oligos_7nt_mkv4_m2 RHOXF1 0.899 0.415 13 6 6 13 0.4615 0.4615 1.0000 R 3
oligos_7nt_mkv4_m2 MA2125.1 oligos_7nt_mkv4_m2 Zfp809 0.870 0.406 13 9 7 15 0.4667 0.5385 0.7778 R -2
oligos_7nt_mkv4_m2 MA0025.3 oligos_7nt_mkv4_m2 NFIL3 0.701 0.401 13 9 8 14 0.5714 0.6154 0.8889 R 5 
 Host name	rsat
 Job started	2026-03-30.203917
 Job done	2026-03-30.203926
 Seconds	1.58
	user	1.58
	system	0.55
	cuser	5.94
;	csystem	0.6