compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html match_table_txt $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab html_index $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/oligos_7nt_mkv4_m5/peak-motifs_oligos_7nt_mkv4_m5.tf file1 1 11 212 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv4_m5 | MA0122.4 | oligos_7nt_mkv4_m5 | Nkx3-2 | 0.774 | 0.703 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA0495.4 | oligos_7nt_mkv4_m5 | MAFF | 0.754 | 0.628 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | 1 |
| oligos_7nt_mkv4_m5 | MA0672.2 | oligos_7nt_mkv4_m5 | NKX2-3 | 0.841 | 0.612 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA2336.1 | oligos_7nt_mkv4_m5 | ZSCAN21 | 0.942 | 0.599 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 3 |
| oligos_7nt_mkv4_m5 | MA0117.3 | oligos_7nt_mkv4_m5 | Mafb | 0.717 | 0.597 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | D | 1 |
| oligos_7nt_mkv4_m5 | MA0673.2 | oligos_7nt_mkv4_m5 | NKX2-8 | 0.818 | 0.595 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA0842.3 | oligos_7nt_mkv4_m5 | NRL | 0.745 | 0.573 | 11 | 12 | 10 | 13 | 0.7692 | 0.9091 | 0.8333 | D | 1 |
| oligos_7nt_mkv4_m5 | MA2003.2 | oligos_7nt_mkv4_m5 | NKX2-4 | 0.761 | 0.553 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA0124.3 | oligos_7nt_mkv4_m5 | Nkx3-1 | 0.830 | 0.528 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 1 |
| oligos_7nt_mkv4_m5 | MA1994.2 | oligos_7nt_mkv4_m5 | Nkx2-1 | 0.828 | 0.527 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA0914.2 | oligos_7nt_mkv4_m5 | ISL2 | 0.906 | 0.494 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 1 |
| oligos_7nt_mkv4_m5 | MA0063.3 | oligos_7nt_mkv4_m5 | NKX2-5 | 0.703 | 0.448 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | R | 0 |
| oligos_7nt_mkv4_m5 | MA1106.2 | oligos_7nt_mkv4_m5 | HIF1A | 0.763 | 0.416 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 2 |
| oligos_7nt_mkv4_m5 | MA2329.1 | oligos_7nt_mkv4_m5 | ZBTB11 | 0.748 | 0.403 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | R | -2 |
| oligos_7nt_mkv4_m5 | MA0473.4 | oligos_7nt_mkv4_m5 | ELF1 | 0.746 | 0.402 | 11 | 9 | 7 | 13 | 0.5385 | 0.6364 | 0.7778 | D | -2 |
Host name rsat Job started 2026-03-30.203933 Job done 2026-03-30.203940 Seconds 1.36 user 1.36 system 0.35 cuser 4.95 ; csystem 0.51