| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv4_m5_shift2 (oligos_7nt_mkv4_m5) |
 |
  |
  |
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --mwAAGTGCTrr
; Alignment reference
a 0 0 60 81 182 186 8 6 10 13 14 61 62
c 0 0 56 36 6 8 4 4 3 191 2 28 37
g 0 0 44 27 6 6 197 1 187 2 2 79 62
t 0 0 52 68 18 12 3 201 12 6 194 44 51
|
| MA0122.4_rc_shift2 (Nkx3-2_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0122.4_rc (Nkx3-2_rc); m=1/15; ncol2=10; w=0; offset=0; strand=R; shift=2; score=0.703344; --tTAAGTGktt-
; cor=; Ncor=
a 0 0 2241.0 325.0 9919.0 10109.0 94.0 212.0 218.0 1033.0 2359.0 2088.0 0
c 0 0 1368.0 68.0 68.0 29.0 10.0 19.0 23.0 1504.0 1154.0 1466.0 0
g 0 0 991.0 147.0 138.0 32.0 9965.0 82.0 9900.0 5079.0 1109.0 952.0 0
t 0 0 5620.0 9680.0 95.0 50.0 151.0 9907.0 79.0 2604.0 5598.0 5714.0 0
|
| MA0495.4_rc_shift3 (MAFF_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0495.4_rc (MAFF_rc); m=2/15; ncol2=11; w=0; offset=1; strand=R; shift=3; score=0.628007; ---aAAaTGCTGA
; cor=; Ncor=
a 0 0 0 24063.0 28039.0 26745.0 21305.0 1690.0 694.0 2785.0 660.0 668.0 36393.0
c 0 0 0 2339.0 1498.0 1833.0 4442.0 1041.0 418.0 33923.0 444.0 330.0 409.0
g 0 0 0 4819.0 2423.0 2009.0 4360.0 559.0 36228.0 400.0 152.0 35020.0 369.0
t 0 0 0 6525.0 5786.0 7159.0 7639.0 34456.0 406.0 638.0 36490.0 1728.0 575.0
|
| MA0672.2_rc_shift2 (NKX2-3_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0672.2_rc (NKX2-3_rc); m=3/15; ncol2=8; w=0; offset=0; strand=R; shift=2; score= 0.6116; --tyAAGTGs---
; cor=; Ncor=
a 0 0 2437.0 343.0 9278.0 9278.0 0.0 250.0 132.0 140.0 0 0 0
c 0 0 1831.0 5037.0 0.0 18.0 0.0 16.0 0.0 4499.0 0 0 0
g 0 0 917.0 1451.0 939.0 0.0 9278.0 98.0 9278.0 9278.0 0 0 0
t 0 0 9278.0 4241.0 0.0 0.0 8.0 9278.0 38.0 2025.0 0 0 0
|
| MA2336.1_rc_shift5 (ZSCAN21_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA2336.1_rc (ZSCAN21_rc); m=4/15; ncol2=7; w=0; offset=3; strand=R; shift=5; score=0.599243; -----AGTGCTT-
; cor=; Ncor=
a 0 0 0 0 0 885.0 11.0 11.0 154.0 41.0 10.0 65.0 0
c 0 0 0 0 0 16.0 30.0 22.0 32.0 853.0 25.0 55.0 0
g 0 0 0 0 0 9.0 881.0 21.0 744.0 25.0 16.0 124.0 0
t 0 0 0 0 0 37.0 25.0 893.0 17.0 28.0 896.0 703.0 0
|
| MA0117.3_shift3 (Mafb) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0117.3 (Mafb); m=5/15; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.597188; ---awwwTGCTGA
; cor=; Ncor=
a 0 0 0 1237.0 1263.0 1080.0 744.0 264.0 2.0 295.0 31.0 45.0 2182.0
c 0 0 0 174.0 121.0 216.0 398.0 618.0 14.0 2182.0 36.0 13.0 13.0
g 0 0 0 326.0 159.0 182.0 429.0 31.0 2182.0 5.0 2.0 2182.0 17.0
t 0 0 0 446.0 639.0 704.0 611.0 2182.0 5.0 7.0 2182.0 170.0 13.0
|
| MA0673.2_rc_shift2 (NKX2-8_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0673.2_rc (NKX2-8_rc); m=6/15; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.595066; --TsRAGTGs---
; cor=; Ncor=
a 0 0 2158.0 271.0 8562.0 8562.0 110.0 516.0 2155.0 249.0 0 0 0
c 0 0 696.0 4286.0 0.0 0.0 0.0 0.0 0.0 2843.0 0 0 0
g 0 0 908.0 2267.0 3197.0 91.0 8562.0 595.0 8562.0 3529.0 0 0 0
t 0 0 8562.0 1738.0 23.0 0.0 14.0 8562.0 70.0 1942.0 0 0 0
|
| MA0842.3_shift3 (NRL) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0842.3 (NRL); m=7/15; ncol2=12; w=0; offset=1; strand=D; shift=3; score=0.573288; ---awwrTGCTGA
; cor=; Ncor=
a 0 0 0 21189.0 17467.0 14033.0 6835.0 581.0 1.0 1008.0 0.0 73.0 27228.0
c 0 0 0 838.0 319.0 1314.0 5669.0 2768.0 0.0 27228.0 8.0 0.0 0.0
g 0 0 0 3685.0 635.0 822.0 7983.0 68.0 27228.0 22.0 0.0 27228.0 4.0
t 0 0 0 6039.0 9761.0 13194.0 6741.0 27228.0 0.0 14.0 27228.0 1036.0 0.0
|
| MA2003.2_rc_shift2 (NKX2-4_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA2003.2_rc (NKX2-4_rc); m=8/15; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.553145; --TsAAGTGg---
; cor=; Ncor=
a 0 0 153.0 58.0 1185.0 1185.0 0.0 207.0 129.0 61.0 0 0 0
c 0 0 57.0 640.0 13.0 1.0 0.0 17.0 7.0 485.0 0 0 0
g 0 0 56.0 545.0 409.0 25.0 1185.0 127.0 1185.0 1185.0 0 0 0
t 0 0 1185.0 243.0 52.0 0.0 0.0 1185.0 14.0 385.0 0 0 0
|
| MA0124.3_rc_shift3 (Nkx3-1_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0124.3_rc (Nkx3-1_rc); m=9/15; ncol2=7; w=0; offset=1; strand=R; shift=3; score=0.528172; ---TAAGTGg---
; cor=; Ncor=
a 0 0 0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 0 0 0
c 0 0 0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 0 0 0
g 0 0 0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 0 0 0
t 0 0 0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 0 0 0
|
| MA1994.2_rc_shift2 (Nkx2-1_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA1994.2_rc (Nkx2-1_rc); m=10/15; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.52705; --TCAAGTG----
; cor=; Ncor=
a 0 0 541.0 518.0 15157.0 15106.0 316.0 343.0 886.0 0 0 0 0
c 0 0 213.0 14172.0 315.0 605.0 118.0 146.0 181.0 0 0 0 0
g 0 0 243.0 657.0 518.0 162.0 15640.0 275.0 14886.0 0 0 0 0
t 0 0 15245.0 895.0 252.0 369.0 168.0 15478.0 289.0 0 0 0 0
|
| MA0914.2_rc_shift3 (ISL2_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0914.2_rc (ISL2_rc); m=11/15; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.494436; ---TAAkTG----
; cor=; Ncor=
a 0 0 0 1354.0 5631.0 5631.0 398.0 248.0 1019.0 0 0 0 0
c 0 0 0 59.0 13.0 169.0 171.0 134.0 126.0 0 0 0 0
g 0 0 0 206.0 718.0 130.0 5631.0 162.0 5631.0 0 0 0 0
t 0 0 0 5631.0 278.0 218.0 3161.0 5631.0 160.0 0 0 0 0
|
| MA0063.3_rc_shift2 (NKX2-5_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0063.3_rc (NKX2-5_rc); m=12/15; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.44759; --TTGAGTG----
; cor=; Ncor=
a 0 0 250.0 288.0 841.0 5166.0 153.0 74.0 322.0 0 0 0 0
c 0 0 98.0 217.0 62.0 61.0 49.0 76.0 24.0 0 0 0 0
g 0 0 165.0 120.0 4319.0 82.0 5098.0 48.0 5002.0 0 0 0 0
t 0 0 4931.0 4819.0 222.0 135.0 144.0 5246.0 96.0 0 0 0 0
|
| MA1106.2_shift4 (HIF1A) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA1106.2 (HIF1A); m=13/15; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.415926; ----ACGTGC---
; cor=; Ncor=
a 0 0 0 0 976.0 0.0 1.0 2.0 84.0 88.0 0 0 0
c 0 0 0 0 0.0 979.0 0.0 33.0 41.0 837.0 0 0 0
g 0 0 0 0 2.0 0.0 979.0 11.0 844.0 20.0 0 0 0
t 0 0 0 0 2.0 1.0 0.0 934.0 11.0 35.0 0 0 0
|
| MA2329.1_rc_shift0 (ZBTB11_rc) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA2329.1_rc (ZBTB11_rc); m=14/15; ncol2=9; w=-2; offset=-2; strand=R; shift=0; score=0.402726; CCGGAAGTG----
; cor=; Ncor=
a 91.0 319.0 27.0 9.0 2293.0 2176.0 106.0 78.0 153.0 0 0 0 0
c 2030.0 1977.0 25.0 15.0 31.0 101.0 84.0 262.0 188.0 0 0 0 0
g 230.0 74.0 2328.0 2342.0 33.0 39.0 2192.0 120.0 1926.0 0 0 0 0
t 44.0 25.0 15.0 29.0 38.0 79.0 13.0 1935.0 128.0 0 0 0 0
|
| MA0473.4_shift0 (ELF1) |
 |
|
|
; oligos_7nt_mkv4_m5 versus MA0473.4 (ELF1); m=15/15; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.401912; CAGGAAGTG----
; cor=; Ncor=
a 3094.0 42164.0 320.0 649.0 45930.0 45243.0 4063.0 3009.0 5688.0 0 0 0 0
c 37923.0 4038.0 421.0 505.0 796.0 705.0 1570.0 1993.0 4236.0 0 0 0 0
g 4819.0 932.0 46642.0 45970.0 676.0 779.0 41738.0 2007.0 34757.0 0 0 0 0
t 1934.0 636.0 387.0 646.0 368.0 1043.0 399.0 40761.0 3089.0 0 0 0 0
|