compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html match_table_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_txt $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 10 matrices $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 11 417 file1 2 11 359 file1 3 15 291 file1 4 11 308 file1 5 10 247 file1 6 11 302 file1 7 13 173 file1 8 11 177 file1 9 11 194 file1 10 11 212 file2 10 matrices $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 11 417 file2 2 11 359 file2 3 15 291 file2 4 11 308 file2 5 10 247 file2 6 11 302 file2 7 13 173 file2 8 11 177 file2 9 11 194 file2 10 11 212 Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | oligos_7nt_mkv4_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | 0.900 | 0.818 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | R | -1 |
| oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | 0.900 | 0.818 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | R | 0 |
| oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m3 | 0.806 | 0.591 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | -1 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m4 | 0.806 | 0.591 | 15 | 11 | 11 | 15 | 0.7333 | 0.7333 | 1.0000 | D | 1 |
| oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m3 | 0.735 | 0.490 | 10 | 15 | 10 | 15 | 0.6667 | 1.0000 | 0.6667 | R | 0 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m5 | 0.735 | 0.490 | 15 | 10 | 10 | 15 | 0.6667 | 0.6667 | 1.0000 | R | 5 |
| oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m3 | 0.736 | 0.460 | 15 | 11 | 10 | 16 | 0.6250 | 0.6667 | 0.9091 | D | 5 |
| oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m3 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m3 | 0.736 | 0.460 | 11 | 15 | 10 | 16 | 0.6250 | 0.9091 | 0.6667 | D | -5 |
Host name rsat Job started 2026-03-30.203835 Job done 2026-03-30.203840 Seconds 0.31 user 0.31 system 0.17 cuser 3.62 ; csystem 0.6