One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203809_2026-03-30.203809_WvTw0s/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; mwAAGTGCTrr ; Alignment reference a 60 81 182 186 8 6 10 13 14 61 62 c 56 36 6 8 4 4 3 191 2 28 37 g 44 27 6 6 197 1 187 2 2 79 62 t 52 68 18 12 3 201 12 6 194 44 51

oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mwAAGTGCTrr ; cor=; Ncor= a 60 81 182 186 8 6 10 13 14 61 62 c 56 36 6 8 4 4 3 191 2 28 37 g 44 27 6 6 197 1 187 2 2 79 62 t 52 68 18 12 3 201 12 6 194 44 51

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=13; shift=0; ncol=13; ctrGGATTACAgg ; Alignment reference a 28 30 47 6 5 157 2 5 157 3 158 37 33 c 91 16 9 3 6 2 14 4 8 153 5 13 23 g 21 32 94 154 156 5 4 8 3 8 3 85 87 t 33 95 23 10 6 9 153 156 5 9 7 38 30

oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2 versus oligos_7nt_mkv4_m2; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; ctrGGATTACAgg ; cor=; Ncor= a 28 30 47 6 5 157 2 5 157 3 158 37 33 c 91 16 9 3 6 2 14 4 8 153 5 13 23 g 21 32 94 154 156 5 4 8 3 8 3 85 87 t 33 95 23 10 6 9 153 156 5 9 7 38 30

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; ccgCCTCCCmm ; Alignment reference a 62 100 37 6 5 11 12 8 4 131 107 c 190 142 66 402 397 7 386 380 375 117 133 g 76 90 261 2 8 32 11 15 21 83 101 t 89 85 53 7 7 367 8 14 17 86 76

oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1 versus oligos_6nt_mkv3_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; ccgCCTCCCmm ; cor=; Ncor= a 62 100 37 6 5 11 12 8 4 131 107 c 190 142 66 402 397 7 386 380 375 117 133 g 76 90 261 2 8 32 11 15 21 83 101 t 89 85 53 7 7 367 8 14 17 86 76

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; dtAAAGGCAyr ; Alignment reference a 52 44 181 150 181 3 16 4 187 39 66 c 30 30 3 25 3 3 2 179 0 50 33 g 49 30 1 4 2 179 162 3 3 38 49 t 63 90 9 15 8 9 14 8 4 67 46

oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m4; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; dtAAAGGCAyr ; cor=; Ncor= a 52 44 181 150 181 3 16 4 187 39 66 c 30 30 3 25 3 3 2 179 0 50 33 g 49 30 1 4 2 179 162 3 3 38 49 t 63 90 9 15 8 9 14 8 4 67 46

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift5 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=11; shift=5; ncol=16; -----ssCGCkCGCss ; Alignment reference a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 22 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 68 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 57 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29 30

oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=5; score= 1; -----ssCGCkCGCss ; cor=; Ncor= a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 22 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 68 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 57 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29 30

oligos_6nt_mkv3_m5_rc_shift5 (oligos_6nt_mkv3_m5_rc)
; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m5_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.818424; -----ssCGCtCGbs- ; cor=; Ncor= a 0 0 0 0 0 43 45 9 9 2 16 4 17 46 45 0 c 0 0 0 0 0 77 72 216 13 233 45 219 8 70 81 0 g 0 0 0 0 0 73 78 11 216 5 26 13 208 69 66 0 t 0 0 0 0 0 54 52 11 9 7 160 11 14 62 55 0

oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=15; w=-5; offset=-5; strand=D; shift=0; score=0.460208; ssCgCCCCGCCCsss- ; cor=; Ncor= a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 0 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 0 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 0 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift1 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=10; shift=1; ncol=11; -svCGaGCGss ; Alignment reference a 0 55 62 14 11 160 7 9 11 52 54 c 0 66 69 208 13 26 5 216 11 78 73 g 0 81 70 8 219 45 233 13 216 72 77 t 0 45 46 17 4 16 2 9 9 45 43

oligos_6nt_mkv3_m5_shift1 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m5; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -svCGaGCGss ; cor=; Ncor= a 0 55 62 14 11 160 7 9 11 52 54 c 0 66 69 208 13 26 5 216 11 78 73 g 0 81 70 8 219 45 233 13 216 72 77 t 0 45 46 17 4 16 2 9 9 45 43

oligos_7nt_mkv4_m3_rc_shift0 (oligos_7nt_mkv4_m3_rc)
; oligos_6nt_mkv3_m5 versus oligos_7nt_mkv4_m3_rc; m=2/3; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.818424; ssGCGmGCGss ; cor=; Ncor= a 30 29 7 12 8 78 8 5 6 31 36 c 57 62 10 149 12 68 6 159 16 74 54 g 68 60 153 6 155 21 156 8 146 56 65 t 22 26 7 10 2 10 7 5 9 16 22

oligos_6nt_mkv3_m3_rc_shift1 (oligos_6nt_mkv3_m3_rc)
; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m3_rc; m=3/3; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.489998; -sssGGGCGGG ; cor=; Ncor= a 0 50 42 33 15 9 9 16 16 13 18 c 0 96 90 151 30 34 33 228 36 49 47 g 0 112 124 84 233 235 242 35 231 218 211 t 0 33 35 23 13 13 7 12 8 11 15

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; amwCCCAGChm ; Alignment reference a 135 92 158 7 12 3 314 4 11 116 95 c 71 97 46 342 325 339 22 5 329 94 121 g 88 82 54 5 10 7 15 346 5 53 69 t 65 88 101 5 12 10 8 4 14 96 74

oligos_6nt_mkv3_m2_shift0 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; amwCCCAGChm ; cor=; Ncor= a 135 92 158 7 12 3 314 4 11 116 95 c 71 97 46 342 325 339 22 5 329 94 121 g 88 82 54 5 10 7 15 346 5 53 69 t 65 88 101 5 12 10 8 4 14 96 74

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; ssCgCCCCGCCCsss ; Alignment reference a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50

oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/4; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssCgCCCCGCCCsss ; cor=; Ncor= a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50

oligos_6nt_mkv3_m4_shift1 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m4; m=2/4; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.590841; -ssGCGCCGCss--- ; cor=; Ncor= a 0 41 47 7 8 8 8 9 13 13 35 35 0 0 0 c 0 132 113 34 279 46 250 253 21 255 141 114 0 0 0 g 0 93 100 254 18 243 42 39 261 31 102 109 0 0 0 t 0 42 48 13 3 11 8 7 13 9 30 50 0 0 0

oligos_6nt_mkv3_m5_rc_shift5 (oligos_6nt_mkv3_m5_rc)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m5_rc; m=3/4; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.489998; -----ssCGCtCGbs ; cor=; Ncor= a 0 0 0 0 0 43 45 9 9 2 16 4 17 46 45 c 0 0 0 0 0 77 72 216 13 233 45 219 8 70 81 g 0 0 0 0 0 73 78 11 216 5 26 13 208 69 66 t 0 0 0 0 0 54 52 11 9 7 160 11 14 62 55

oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)
; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.460208; -----ssCGCkCGCs ; cor=; Ncor= a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; mgCCACTGCmc ; Alignment reference a 109 73 14 5 257 5 18 11 13 105 71 c 77 75 252 282 10 282 19 15 266 81 95 g 68 103 8 4 20 8 8 266 7 44 72 t 48 51 28 11 15 7 257 10 16 72 64

oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mgCCACTGCmc ; cor=; Ncor= a 109 73 14 5 257 5 18 11 13 105 71 c 77 75 252 282 10 282 19 15 266 81 95 g 68 103 8 4 20 8 8 266 7 44 72 t 48 51 28 11 15 7 257 10 16 72 64

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift1 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -ssGCGCCGCss ; Alignment reference a 0 41 47 7 8 8 8 9 13 13 35 35 c 0 132 113 34 279 46 250 253 21 255 141 114 g 0 93 100 254 18 243 42 39 261 31 102 109 t 0 42 48 13 3 11 8 7 13 9 30 50

oligos_6nt_mkv3_m4_shift1 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4 versus oligos_6nt_mkv3_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -ssGCGCCGCss ; cor=; Ncor= a 0 41 47 7 8 8 8 9 13 13 35 35 c 0 132 113 34 279 46 250 253 21 255 141 114 g 0 93 100 254 18 243 42 39 261 31 102 109 t 0 42 48 13 3 11 8 7 13 9 30 50

oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m4 versus oligos_6nt_mkv3_m3; m=2/2; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.590841; ssCgCCCCGCCC ; cor=; Ncor= a 33 30 17 22 8 15 11 8 12 7 13 13 c 124 125 206 45 229 211 218 231 35 242 235 233 g 87 96 46 197 37 47 49 36 228 33 34 30 t 47 40 22 27 17 18 13 16 16 9 9 15

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=11; shift=5; ncol=16; -----ssCGCkCGCss ; Alignment reference a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 22 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 68 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 57 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29 30
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=5; score= 1; -----ssCGCkCGCss ; cor=; Ncor= a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 22 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 68 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 57 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29 30
oligos_6nt_mkv3_m5_rc_shift5 (oligos_6nt_mkv3_m5_rc)				; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m5_rc; m=2/3; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.818424; -----ssCGCtCGbs- ; cor=; Ncor= a 0 0 0 0 0 43 45 9 9 2 16 4 17 46 45 0 c 0 0 0 0 0 77 72 216 13 233 45 219 8 70 81 0 g 0 0 0 0 0 73 78 11 216 5 26 13 208 69 66 0 t 0 0 0 0 0 54 52 11 9 7 160 11 14 62 55 0
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=15; w=-5; offset=-5; strand=D; shift=0; score=0.460208; ssCgCCCCGCCCsss- ; cor=; Ncor= a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 0 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 0 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 0 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m5_shift1 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=10; shift=1; ncol=11; -svCGaGCGss ; Alignment reference a 0 55 62 14 11 160 7 9 11 52 54 c 0 66 69 208 13 26 5 216 11 78 73 g 0 81 70 8 219 45 233 13 216 72 77 t 0 45 46 17 4 16 2 9 9 45 43
oligos_6nt_mkv3_m5_shift1 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m5; m=1/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -svCGaGCGss ; cor=; Ncor= a 0 55 62 14 11 160 7 9 11 52 54 c 0 66 69 208 13 26 5 216 11 78 73 g 0 81 70 8 219 45 233 13 216 72 77 t 0 45 46 17 4 16 2 9 9 45 43
oligos_7nt_mkv4_m3_rc_shift0 (oligos_7nt_mkv4_m3_rc)				; oligos_6nt_mkv3_m5 versus oligos_7nt_mkv4_m3_rc; m=2/3; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.818424; ssGCGmGCGss ; cor=; Ncor= a 30 29 7 12 8 78 8 5 6 31 36 c 57 62 10 149 12 68 6 159 16 74 54 g 68 60 153 6 155 21 156 8 146 56 65 t 22 26 7 10 2 10 7 5 9 16 22
oligos_6nt_mkv3_m3_rc_shift1 (oligos_6nt_mkv3_m3_rc)				; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m3_rc; m=3/3; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.489998; -sssGGGCGGG ; cor=; Ncor= a 0 50 42 33 15 9 9 16 16 13 18 c 0 96 90 151 30 34 33 228 36 49 47 g 0 112 124 84 233 235 242 35 231 218 211 t 0 33 35 23 13 13 7 12 8 11 15

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=15; shift=0; ncol=15; ssCgCCCCGCCCsss ; Alignment reference a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/4; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; ssCgCCCCGCCCsss ; cor=; Ncor= a 33 30 17 22 8 15 11 8 12 7 13 13 23 35 33 c 124 125 206 45 229 211 218 231 35 242 235 233 84 124 112 g 87 96 46 197 37 47 49 36 228 33 34 30 151 90 96 t 47 40 22 27 17 18 13 16 16 9 9 15 33 42 50
oligos_6nt_mkv3_m4_shift1 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m4; m=2/4; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.590841; -ssGCGCCGCss--- ; cor=; Ncor= a 0 41 47 7 8 8 8 9 13 13 35 35 0 0 0 c 0 132 113 34 279 46 250 253 21 255 141 114 0 0 0 g 0 93 100 254 18 243 42 39 261 31 102 109 0 0 0 t 0 42 48 13 3 11 8 7 13 9 30 50 0 0 0
oligos_6nt_mkv3_m5_rc_shift5 (oligos_6nt_mkv3_m5_rc)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m5_rc; m=3/4; ncol2=10; w=0; offset=5; strand=R; shift=5; score=0.489998; -----ssCGCtCGbs ; cor=; Ncor= a 0 0 0 0 0 43 45 9 9 2 16 4 17 46 45 c 0 0 0 0 0 77 72 216 13 233 45 219 8 70 81 g 0 0 0 0 0 73 78 11 216 5 26 13 208 69 66 t 0 0 0 0 0 54 52 11 9 7 160 11 14 62 55
oligos_7nt_mkv4_m3_shift5 (oligos_7nt_mkv4_m3)				; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=4/4; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.460208; -----ssCGCkCGCs ; cor=; Ncor= a 0 0 0 0 0 22 16 9 5 7 10 2 10 7 26 c 0 0 0 0 0 65 56 146 8 156 21 155 6 153 60 g 0 0 0 0 0 54 74 16 159 6 68 12 149 10 62 t 0 0 0 0 0 36 31 6 5 8 78 8 12 7 29