RSAT - peak-motifs result

Analysis: 468BrM_3_CancerMetabolism (30/03/2026 20:39)

peak-motifs  -v 1 -title 468BrM_3_CancerMetabolism -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db Homer tf $RSAT/public_html/motif_databases/Homer/Homer_motifs.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gcctccc (sig=7.34; e-value=4.6e-08) RC: gggaggc oligos_6nt_mkv3_m2 assembly: acccagc (sig=4.45; e-value=3.5e-05) RC: gctgggt oligos_6nt_mkv3_m3 assembly: cgccccgcccg (sig=4.04; e-value=9.1e-05) RC: cgggcggggcg oligos_6nt_mkv3_m4 assembly: gcgccgc (sig=2.82; e-value=0.0015) RC: gcggcgc oligos_6nt_mkv3_m5 assembly: cgagcg (sig=1.65; e-value=0.022) RC: cgctcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ccactgc (sig=2.26; e-value=0.0055) RC: gcagtgg oligos_7nt_mkv4_m2 assembly: gggattaca (sig=2.10; e-value=0.0079) RC: tgtaatccc oligos_7nt_mkv4_m3 assembly: cgctcgc (sig=2.02; e-value=0.0095) RC: gcgagcg oligos_7nt_mkv4_m4 assembly: aaaggca (sig=2.01; e-value=0.0098) RC: tgccttt oligos_7nt_mkv4_m5 assembly: aagtgct (sig=1.77; e-value=0.017) RC: agcactt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=7.34; evalue=4.6e-08 ccGCCTCCCms SKGGGAGGCGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccGCCTCCCms homer_317_Znf263 homer_317_Znf263 D 9 0.7500 0.746 0.559 NA NA homer_63_Egr2 homer_63_Egr2 R 9 0.6429 0.705 0.453 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 102 (9.62%) Max nb of predicted sites per peak: 13  (chr17:82098093-82098519) Mean nb of predicted sites per peak: 1.70	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=4.45; evalue=3.5e-05 rsaCCCAGCmc GKGCTGGGTSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsaCCCAGCmc homer_323_ZNF416 homer_323_ZNF416 R 10 0.9091 0.786 0.714 NA NA homer_312_Zic homer_312_Zic R 9 0.7500 0.760 0.570 NA NA homer_272_ATTTCCCAGVAKSCY homer_272_ATTTCCCAGVAKSCY D 11 0.7333 0.746 0.547 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 112 (10.57%) Max nb of predicted sites per peak: 3  (chr1:225930002-225930182) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=4.04; evalue=9.1e-05 ssCGCCCCGCCCsss SSSGGGCGGGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCGCCCCGCCCsss homer_266_Sp1 homer_266_Sp1 D 12 0.8000 0.887 0.710 NA NA homer_146_KLF3 homer_146_KLF3 D 14 0.8750 0.794 0.694 NA NA homer_145_KLF14 homer_145_KLF14 R 12 0.8000 0.835 0.668 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (5.94%) Max nb of predicted sites per peak: 88  (chr17:82098093-82098519) Mean nb of predicted sites per peak: 10.73	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=2.82; evalue=0.0015 ssGCGCCGCss SSGCGGCGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssGCGCCGCss homer_266_Sp1 homer_266_Sp1 D 10 0.7692 0.795 0.611 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 53 (5.00%) Max nb of predicted sites per peak: 56  (chr17:82098093-82098519) Mean nb of predicted sites per peak: 7.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=1.65; evalue=0.022 ssCGaGCGss SSCGCTCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCGaGCGss homer_326_ZNF519 homer_326_ZNF519 D 7 0.5385 0.895 0.482 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 42 (3.96%) Max nb of predicted sites per peak: 9  (chr10:87094813-87095031) Mean nb of predicted sites per peak: 2.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=2.26; evalue=0.0055 vsCCACTGCms SKGCAGTGGSB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vsCCACTGCms Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 70 (6.60%) Max nb of predicted sites per peak: 5  (chr15:72231133-72231729) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=2.10; evalue=0.0079 ctgGGATTACAgg CCTGTAATCCCAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ctgGGATTACAgg homer_203_Otx2 homer_203_Otx2 R 10 0.7692 0.774 0.596 NA NA homer_225_Pitx1 homer_225_Pitx1 R 8 0.6154 0.933 0.574 NA NA homer_120_GSC homer_120_GSC D 8 0.6154 0.870 0.535 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 86 (8.11%) Max nb of predicted sites per peak: 2  (chr1:225930002-225930182) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=2.02; evalue=0.0095 ssCGCkCGCss SSGCGMGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCGCkCGCss Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 43 (4.06%) Max nb of predicted sites per peak: 18  (chr10:87094813-87095031) Mean nb of predicted sites per peak: 5.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=2.01; evalue=0.0098 ktAAAGGCAyr YRTGCCTTTAM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ktAAAGGCAyr homer_289_Tcf4 homer_289_Tcf4 D 9 0.6429 0.705 0.453 NA NA homer_262_Sox3 homer_262_Sox3 R 7 0.5833 0.710 0.414 NA NA homer_290_TCFL2 homer_290_TCFL2 D 7 0.5000 0.802 0.401 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 53 (5.00%) Max nb of predicted sites per peak: 2  (chr17:82133577-82133800) Mean nb of predicted sites per peak: 1.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=1.77; evalue=0.017 mwAAGTGCTrr YYAGCACTTWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Homer name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mwAAGTGCTrr homer_185_AAGCACTTAA homer_185_AAGCACTTAA R 10 0.9091 0.842 0.765 NA NA homer_18_Bapx1 homer_18_Bapx1 D 10 0.9091 0.784 0.713 NA NA homer_184_AASCACTCAA homer_184_AASCACTCAA R 10 0.9091 0.726 0.660 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 61 (5.75%) Max nb of predicted sites per peak: 2  (chr19:34333299-34333499) Mean nb of predicted sites per peak: 1.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 468BrM_3_CancerMetabolism -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db Homer tf $RSAT/public_html/motif_databases/Homer/Homer_motifs.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/30/peak-motifs.2026-03-30.203840_2026-03-30.203840_4XF5yR/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab