/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_query_matrices.transfac
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.103350_uuyevo/compare-matrices_query_matrices.transfac
		file1	1	12	3217	ykcCGGCGAcgr
	file2	3463 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5		awmAGTTr
		file2		2		8		3		rkTAGTTr
		file2		3		8		5		wamaGTTr
		file2		4		8		1		GTTAGTTA
		file2		5		8		2		kwCwGTTr
		file2		6		8		2		GTTAGTTr
		file2		7		8		6		wwmaGTTr
		file2		8		8		2		rsTkGTTr
		file2		9		8		8		RkTwGKTr
		file2		10		8		1		TACTGTTG
		file2		11		8		4		WhhWGTTr
		...	3453 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
positions_6nt_m5 AT3G11100_UN0353.1_JASPAR positions_6nt_m5 AT3G11100:UN0353.1:JASPAR 0.946 0.946 5.909 0.982 0.96127 12 12 12 12 1.0000 1.0000 1.0000 D 0 ykcCGGCGAcgr ygmCGGCGAsrr 2 1 30 1 1 7.0000 1
positions_6nt_m5 AT5G05550.ampDAP_M0775_AthalianaCistrome positions_6nt_m5 AT5G05550.ampDAP:M0775:AthalianaCistrome 0.937 0.749 5.915 0.976 0.95494 12 15 12 15 0.8000 1.0000 0.8000 D -3 ykcCGGCGAcgr ...yTCCGGCGayrw 5 7 29 4 4 9.8000 2
positions_6nt_m5 AT5G05550.DAP_M0772_AthalianaCistrome positions_6nt_m5 AT5G05550.DAP:M0772:AthalianaCistrome 0.940 0.752 5.699 0.978 0.95722 12 15 12 15 0.8000 1.0000 0.8000 D -3 ykcCGGCGAcgr ...ytCCGGCGayrw 3 5 40 2 2 10.4000 3
positions_6nt_m5 AT5G05550_UN0356.1_JASPAR positions_6nt_m5 AT5G05550:UN0356.1:JASPAR 0.920 0.723 5.727 0.966 0.94477 12 13 11 14 0.7857 0.9167 0.8462 D -2 ykcCGGCGAcg. ..CTCCGGCGahr 10 8 37 9 10 14.8000 4
positions_6nt_m5 ASIL2_UN0352.1_JASPAR positions_6nt_m5 ASIL2:UN0352.1:JASPAR 0.916 0.720 5.678 0.965 0.94342 12 13 11 14 0.7857 0.9167 0.8462 D -2 ykcCGGCGAcg. ..CTCCGGCGamd 14 9 41 10 11 17.0000 5
positions_6nt_m5 AT3G58630.DAP_M0782_AthalianaCistrome positions_6nt_m5 AT3G58630.DAP:M0782:AthalianaCistrome 0.929 0.638 5.983 0.969 0.94726 12 15 11 16 0.6875 0.9167 0.7333 D -4 ykcCGGCGAcg. ....CTCCGGCGAcr 7 38 27 6 7 17.0000 6
positions_6nt_m5 ENAP2_MA2040.2_JASPAR positions_6nt_m5 ENAP2:MA2040.2:JASPAR 0.924 0.693 5.725 0.961 0.93406 12 9 9 12 0.7500 0.7500 1.0000 D 0 ykcCGGCGA... CTCCGGCGa 9 15 38 14 13 17.8000 7
positions_6nt_m5 ASIL2_MA2039.2_JASPAR positions_6nt_m5 ASIL2:MA2039.2:JASPAR 0.920 0.690 5.677 0.959 0.93219 12 9 9 12 0.7500 0.7500 1.0000 D 0 ykcCGGCGA... CTCCGGCGa 12 16 42 15 14 19.8000 8
positions_6nt_m5 AT3G58630.ampDAP_M0783_AthalianaCistrome positions_6nt_m5 AT3G58630.ampDAP:M0783:AthalianaCistrome 0.920 0.633 5.760 0.967 0.94512 12 15 11 16 0.6875 0.9167 0.7333 D -4 ykcCGGCGAcg. ....YTCCGGCGacr 11 42 36 8 9 21.2000 9
positions_6nt_m5 AT3G58630_UN0391.2_JASPAR positions_6nt_m5 AT3G58630:UN0391.2:JASPAR 0.930 0.644 5.310 0.963 0.93621 12 10 9 13 0.6923 0.7500 0.9000 R -1 ykcCGGCGA... .CTCCGGCGA 6 35 54 12 12 23.8000 10
positions_6nt_m5 Solyc06g051120.4.1_TRIHELIX_4_AT5G05550_EEAD0653_EEADannot positions_6nt_m5 Solyc06g051120.4.1_TRIHELIX_4_AT5G05550:EEAD0653:EEADannot 0.917 0.840 3.624 0.970 0.94811 12 11 11 12 0.9167 0.9167 1.0000 R 0 ykcCGGCGAcg. YTCCGGYGAMD 13 2 109 5 6 27.0000 11
positions_6nt_m5 JUB1_MA2017.1_JASPAR positions_6nt_m5 JUB1:MA2017.1:JASPAR 0.825 0.707 5.580 0.941 0.92991 12 14 12 14 0.8571 1.0000 0.8571 D -1 ykcCGGCGAcgr .ycACGGCGagtd. 38 11 45 18 26 27.6000 12
positions_6nt_m5 Zm00001d031796_MA1831.1_JASPAR positions_6nt_m5 Zm00001d031796:MA1831.1:JASPAR 0.837 0.837 5.182 0.941 0.92965 12 12 12 12 1.0000 1.0000 1.0000 D 0 ykcCGGCGAcgr ssACGGCGACgs 34 3 56 19 27 27.8000 13
positions_6nt_m5 AT3G11100_UN0353.2_JASPAR positions_6nt_m5 AT3G11100:UN0353.2:JASPAR 0.954 0.556 5.902 0.975 0.93979 12 7 7 12 0.5833 0.5833 1.0000 D 2 ..cCGGCGA... mCGGCGA 1 98 31 11 5 29.2000 14
positions_6nt_m5 VFP5_UN0412.1_JASPAR positions_6nt_m5 VFP5:UN0412.1:JASPAR 0.940 0.752 1.972 0.978 0.95720 12 15 12 15 0.8000 1.0000 0.8000 R -3 ykcCGGCGAcgr ...YTCCGGCGAYRW 4 6 140 3 3 31.2000 15
positions_6nt_m5 Zm00001d031796_MA1831.2_JASPAR positions_6nt_m5 Zm00001d031796:MA1831.2:JASPAR 0.844 0.703 5.176 0.933 0.91813 12 10 10 12 0.8333 0.8333 1.0000 D 1 .kcCGGCGAcg. sACGGCGACg 32 12 57 28 32 32.2000 16
positions_6nt_m5 Carub.0006s0445.1_TRIHELIX_4_AT5G05550_EEAD0616_EEADannot positions_6nt_m5 Carub.0006s0445.1_TRIHELIX_4_AT5G05550:EEAD0616:EEADannot 0.895 0.596 4.542 0.955 0.92466 12 8 8 12 0.6667 0.6667 1.0000 R 0 ykcCGGCG.... YKCCGGYG 17 65 75 21 15 38.6000 17
positions_6nt_m5 AT3G58630_UN0391.1_JASPAR positions_6nt_m5 AT3G58630:UN0391.1:JASPAR 0.929 0.638 2.073 0.969 0.94725 12 15 11 16 0.6875 0.9167 0.7333 R -4 ykcCGGCGAcg. ....CTCCGGCGACR 8 39 137 7 8 39.8000 18
positions_6nt_m5 RAP211_MA1266.1_JASPAR positions_6nt_m5 RAP211:MA1266.1:JASPAR 0.858 0.687 0.593 0.951 0.93606 12 15 12 15 0.8000 1.0000 0.8000 R 0 ykcCGGCGAcgr MGMCGGCGRHGR... 28 17 166 13 18 48.4000 19
positions_6nt_m5 PK19363.1_M0004_1.02_CISBP positions_6nt_m5 PK19363.1:M0004_1.02:CISBP 0.875 0.583 3.784 0.945 0.91740 12 8 8 12 0.6667 0.6667 1.0000 R 0 ykcCGGCG.... YGGCGGCG 20 75 100 31 22 49.6000 20
positions_6nt_m5 At3g14180.DAP_M0777_AthalianaCistrome positions_6nt_m5 At3g14180.DAP:M0777:AthalianaCistrome 0.901 0.579 2.112 0.950 0.92583 12 11 9 14 0.6429 0.7500 0.8182 R -2 ykcCGGCGA... ..YTCCGGYGA 15 81 134 20 19 53.8000 21
positions_6nt_m5 AT5G51190_M0040_1.02_CISBP positions_6nt_m5 AT5G51190:M0040_1.02:CISBP 0.871 0.581 5.474 0.930 0.90663 12 8 8 12 0.6667 0.6667 1.0000 D 0 ykcCGGCG.... kGCCGGCG 21 78 50 84 36 53.8000 22
positions_6nt_m5 ERF105_MA1000.1_JASPAR positions_6nt_m5 ERF105:MA1000.1:JASPAR 0.870 0.580 5.359 0.930 0.90671 12 8 8 12 0.6667 0.6667 1.0000 D 0 ykcCGGCG.... kGCCGGCG 22 80 53 81 35 54.2000 23
positions_6nt_m5 ERF118_MA1671.1_JASPAR positions_6nt_m5 ERF118:MA1671.1:JASPAR 0.776 0.711 5.060 0.910 0.90972 12 11 11 12 0.9167 0.9167 1.0000 R 0 ykcCGGCGAcg. YGGCGGCGGHG 70 10 61 61 71 54.6000 24
positions_6nt_m5 RAP2-11_MA1266.2_JASPAR positions_6nt_m5 RAP2-11:MA1266.2:JASPAR 0.862 0.790 0.250 0.948 0.93145 12 11 11 12 0.9167 0.9167 1.0000 R 1 .kcCGGCGAcgr GMCGGCGRHGR 25 4 208 16 20 54.6000 25
positions_6nt_m5 ABR1_MA1244.2_JASPAR positions_6nt_m5 ABR1:MA1244.2:JASPAR 0.771 0.653 6.242 0.908 0.90855 12 12 11 13 0.8462 0.9167 0.9167 D -1 ykcCGGCGAcg. .tkrCGGCGGmG 77 32 17 70 84 56.0000 26
positions_6nt_m5 ERF3_M0011_1.02_CISBP positions_6nt_m5 ERF3:M0011_1.02:CISBP 0.862 0.575 4.361 0.934 0.90927 12 8 8 12 0.6667 0.6667 1.0000 R 0 ykcCGGCG.... YGGCGGCG 26 84 79 64 30 56.6000 27
positions_6nt_m5 ERF8.ampDAP_M0046_AthalianaCistrome positions_6nt_m5 ERF8.ampDAP:M0046:AthalianaCistrome 0.777 0.518 6.471 0.918 0.91751 12 18 12 18 0.6667 1.0000 0.6667 D -4 ykcCGGCGAcgr ....yGGCGGCGghgr.. 67 128 10 30 53 57.6000 28
positions_6nt_m5 RRTF1.DAP_M0057_AthalianaCistrome positions_6nt_m5 RRTF1.DAP:M0057:AthalianaCistrome 0.783 0.538 6.645 0.914 0.91135 12 15 11 16 0.6875 0.9167 0.7333 D -4 ykcCGGCGAcg. ....tkrCGGCGsmg 64 109 7 51 59 58.0000 29
positions_6nt_m5 ERF3_MA1005.1_JASPAR positions_6nt_m5 ERF3:MA1005.1:JASPAR 0.859 0.573 4.322 0.933 0.90864 12 8 8 12 0.6667 0.6667 1.0000 R 0 ykcCGGCG.... YGGCGGCG 27 85 81 69 31 58.6000 30
positions_6nt_m5 ERF6_MA1006.2_JASPAR positions_6nt_m5 ERF6:MA1006.2:JASPAR 0.900 0.525 5.700 0.936 0.90410 12 7 7 12 0.5833 0.5833 1.0000 D 0 ykcCGGC..... tGCCGGC 16 122 39 102 29 61.6000 31
positions_6nt_m5 RAP211.ampDAP_M0019_AthalianaCistrome positions_6nt_m5 RAP211.ampDAP:M0019:AthalianaCistrome 0.783 0.626 2.171 0.924 0.92033 12 15 12 15 0.8000 1.0000 0.8000 R -3 ykcCGGCGAcgr ...WGCCGGCSAARR 63 47 132 25 44 62.2000 32
positions_6nt_m5 ERF115.ampDAP_M0030_AthalianaCistrome positions_6nt_m5 ERF115.ampDAP:M0030:AthalianaCistrome 0.779 0.535 6.229 0.912 0.91054 12 15 11 16 0.6875 0.9167 0.7333 D -4 ykcCGGCGAcg. ....ykrCGGCGGmg 66 111 19 53 64 62.6000 33
positions_6nt_m5 ERF069_MA0997.1_JASPAR positions_6nt_m5 ERF069:MA0997.1:JASPAR 0.824 0.618 1.567 0.931 0.91266 12 9 9 12 0.7500 0.7500 1.0000 R 0 ykcCGGCGA... TGGCGGCGS 39 49 146 47 33 62.8000 34
positions_6nt_m5 AT1G22985_M0007_1.02_CISBP positions_6nt_m5 AT1G22985:M0007_1.02:CISBP 0.821 0.616 1.571 0.931 0.91221 12 9 9 12 0.7500 0.7500 1.0000 R 0 ykcCGGCGA... TGGCGGCGS 41 50 145 48 34 63.6000 35
positions_6nt_m5 RRTF1.ampDAP_M0066_AthalianaCistrome positions_6nt_m5 RRTF1.ampDAP:M0066:AthalianaCistrome 0.775 0.489 6.626 0.919 0.91801 12 19 12 19 0.6316 1.0000 0.6316 D -5 ykcCGGCGAcgr .....WkrCGGCGsmgr.. 71 166 8 29 52 65.2000 36
positions_6nt_m5 AT1G28160_MA1247.1_JASPAR positions_6nt_m5 AT1G28160:MA1247.1:JASPAR 0.755 0.604 6.667 0.902 0.90982 12 15 12 15 0.8000 1.0000 0.8000 D 0 ykcCGGCGAcgr ygrCGGCGGmGr... 112 57 4 59 98 66.0000 37
positions_6nt_m5 ERF3.ampDAP_M0074_AthalianaCistrome positions_6nt_m5 ERF3.ampDAP:M0074:AthalianaCistrome 0.776 0.465 6.349 0.917 0.91696 12 20 12 20 0.6000 1.0000 0.6000 D 0 ykcCGGCGAcgr yGrCGGCGGmgr........ 69 179 12 32 54 69.2000 38
positions_6nt_m5 ERF6_MA1006.1_JASPAR positions_6nt_m5 ERF6:MA1006.1:JASPAR 0.815 0.564 5.793 0.913 0.90143 12 10 9 13 0.6923 0.7500 0.9000 D -1 ykcCGGCGA... .tGCCGGCgb 42 91 34 122 62 70.2000 39
positions_6nt_m5 ERF11.ampDAP_M0072_AthalianaCistrome positions_6nt_m5 ERF11.ampDAP:M0072:AthalianaCistrome 0.775 0.465 6.585 0.916 0.91624 12 20 12 20 0.6000 1.0000 0.6000 D -5 ykcCGGCGAcgr .....yGrCGGCGghgr... 72 180 9 33 57 70.2000 40
positions_6nt_m5 ATERF6_M0027_1.02_CISBP positions_6nt_m5 ATERF6:M0027_1.02:CISBP 0.814 0.564 5.788 0.912 0.90128 12 10 9 13 0.6923 0.7500 0.9000 D -1 ykcCGGCGA... .tGCCGGCgb 43 93 35 123 63 71.4000 41
positions_6nt_m5 ERF024PS_EEAD0159_EEADannot positions_6nt_m5 ERF024PS:EEAD0159:EEADannot 0.760 0.608 2.659 0.920 0.91817 12 15 12 15 0.8000 1.0000 0.8000 R -3 ykcCGGCGAcgr ...YGKCGGCRRMGR 102 56 126 27 51 72.4000 42
positions_6nt_m5 ERF112_MA1002.1_JASPAR positions_6nt_m5 ERF112:MA1002.1:JASPAR 0.798 0.665 0.241 0.928 0.91508 12 10 10 12 0.8333 0.8333 1.0000 R 0 ykcCGGCGAc.. TGGCGGCGSC 57 24 209 34 38 72.4000 43
positions_6nt_m5 LBD13.ampDAP_M0471_AthalianaCistrome positions_6nt_m5 LBD13.ampDAP:M0471:AthalianaCistrome 0.855 0.427 4.046 0.947 0.92319 12 15 9 18 0.5000 0.7500 0.6000 D 3 ...CGGCGAcgr CGsCGgadw...... 29 198 93 22 21 72.6000 44
positions_6nt_m5 RAP26_MA1221.1_JASPAR positions_6nt_m5 RAP26:MA1221.1:JASPAR 0.748 0.598 6.272 0.902 0.90955 12 15 12 15 0.8000 1.0000 0.8000 D 0 ykcCGGCGAcgr tkrCGGCGGmGg... 123 63 16 62 100 72.8000 45
positions_6nt_m5 AT2G33710_M0018_1.02_CISBP positions_6nt_m5 AT2G33710:M0018_1.02:CISBP 0.797 0.664 0.237 0.927 0.91461 12 10 10 12 0.8333 0.8333 1.0000 R 0 ykcCGGCGAc.. TGGCGGCGSC 58 26 211 38 40 74.6000 46
positions_6nt_m5 ERF024Ved_EEAD0158_EEADannot positions_6nt_m5 ERF024Ved:EEAD0158:EEADannot 0.740 0.592 4.851 0.913 0.91485 12 15 12 15 0.8000 1.0000 0.8000 D -3 ykcCGGCGAcgr ...yGkCGGYrrmgr 143 67 68 37 60 75.0000 47
positions_6nt_m5 AT1G28160.ampDAP_M0035_AthalianaCistrome positions_6nt_m5 AT1G28160.ampDAP:M0035:AthalianaCistrome 0.763 0.654 3.218 0.906 0.91169 12 14 12 14 0.8571 1.0000 0.8571 R 0 ykcCGGCGAcgr YGRCGGCGGMGR.. 95 31 113 50 88 75.4000 48
positions_6nt_m5 CRF3_M0041_1.02_CISBP positions_6nt_m5 CRF3:M0041_1.02:CISBP 0.803 0.603 1.285 0.925 0.90844 12 9 9 12 0.7500 0.7500 1.0000 R 0 ykcCGGCGA... TGGCGGCGS 51 58 153 74 43 75.8000 49
positions_6nt_m5 ERF11_MA1001.1_JASPAR positions_6nt_m5 ERF11:MA1001.1:JASPAR 0.810 0.561 1.482 0.927 0.91000 12 10 9 13 0.6923 0.7500 0.9000 R -1 ykcCGGCGA... .TKRCGGCGS 44 94 147 56 39 76.0000 50 
 Host name	rsat
 Job started	2026-04-09.103350
 Job done	2026-04-09.103453
 Seconds	14.65
	user	14.66
	system	6.16
	cuser	34.03
;	csystem	8.75