One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.105353_3PThzu/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.105353_3PThzu/compare-matrices.tab

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift0 ; 14 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=21; shift=0; ncol=21; wwtTAAATAAATTAAAATTww ; Alignment reference a 280 282 147 107 580 565 597 62 631 630 643 104 105 641 632 592 594 106 129 258 291 c 134 120 61 62 51 45 36 55 30 33 23 36 50 34 36 31 33 51 49 110 87 g 106 107 64 52 35 35 45 48 30 19 20 29 38 31 33 28 48 60 59 150 134 t 248 259 496 547 102 123 90 603 77 86 82 599 575 62 67 117 93 551 531 250 256

ARID3_UN0388.1_JASPAR_shift8 (ARID3:UN0388.1:JASPAR) 0.827 0.467 3.188 0.930 0.936 3 5 5 1 2 3.200 1
; positions_6nt_m2 versus ARID3_UN0388.1_JASPAR (ARID3:UN0388.1:JASPAR); m=1/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 3.2; --------AAwwtrAAATYAA ; cor=0.827; Ncor=0.467; logoDP=3.188; NsEucl=0.930; NSW=0.936; rcor=3; rNcor=5; rlogoDP=5; rNsEucl=1; rNSW=2; rank_mean=3.200; match_rank=1 a 0 0 0 0 0 0 0 0 703 714 564 269 220 381 797 976 980 0 0 775.33 934 c 0 0 0 0 0 0 0 0 63.877 90.308 63.877 57.269 196 158.59 70.485 6.608 0 0 262 0 11.013 g 0 0 0 0 0 0 0 0 107.93 41.85 13.216 44.053 66.079 275.33 0 17.621 0 0 0 224.67 55.066 t 0 0 0 0 0 0 0 0 126 154 359 630 518 185 132 0 19.824 1000 738 0 0

AT2G17410.DAP_M0147_AthalianaCistrome_shift8 (AT2G17410.DAP:M0147:AthalianaCistrome) 0.827 0.467 3.188 0.930 0.936 4 6 6 2 3 4.200 2
; positions_6nt_m2 versus AT2G17410.DAP_M0147_AthalianaCistrome (AT2G17410.DAP:M0147:AthalianaCistrome); m=2/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 4.2; --------AAwwtrAAATYAA ; cor=0.827; Ncor=0.467; logoDP=3.188; NsEucl=0.930; NSW=0.936; rcor=4; rNcor=6; rlogoDP=6; rNsEucl=2; rNSW=3; rank_mean=4.200; match_rank=2 a 0 0 0 0 0 0 0 0 319 324 256 122 100 173 362 443 445 0 0 352 424 c 0 0 0 0 0 0 0 0 29 41 29 26 89 72 32 3 0 0 119 0 5 g 0 0 0 0 0 0 0 0 49 19 6 20 30 125 0 8 0 0 0 102 25 t 0 0 0 0 0 0 0 0 57 70 163 286 235 84 60 0 9 454 335 0 0

AT1G20910.DAP_M0143_AthalianaCistrome_rc_shift8 (AT1G20910.DAP:M0143:AthalianaCistrome_rc) 0.837 0.438 3.251 0.922 0.932 2 8 4 5 4 4.600 3
; positions_6nt_m2 versus AT1G20910.DAP_M0143_AthalianaCistrome_rc (AT1G20910.DAP:M0143:AthalianaCistrome_rc); m=3/13; ncol2=11; w=0; offset=8; strand=R; shift=8; score= 4.6; --------aAATTrAwTTw-- ; cor=0.837; Ncor=0.438; logoDP=3.251; NsEucl=0.922; NSW=0.932; rcor=2; rNcor=8; rlogoDP=4; rNsEucl=5; rNSW=4; rank_mean=4.600; match_rank=3 a 0 0 0 0 0 0 0 0 342 579 596 0 0 358 565 344 133 62 179 0 0 c 0 0 0 0 0 0 0 0 143 0 0 0 85 0 0 0 4 31 100 0 0 g 0 0 0 0 0 0 0 0 9 17 0 0 0 238 31 10 7 43 109 0 0 t 0 0 0 0 0 0 0 0 102 0 0 596 511 0 0 242 452 460 208 0 0

TCX3_MA1682.2_JASPAR_shift8 (TCX3:MA1682.2:JASPAR) 0.810 0.463 4.283 0.916 0.915 5 7 2 8 6 5.600 4
; positions_6nt_m2 versus TCX3_MA1682.2_JASPAR (TCX3:MA1682.2:JASPAR); m=4/13; ncol2=12; w=0; offset=8; strand=D; shift=8; score= 5.6; --------AAATTCAAATww- ; cor=0.810; Ncor=0.463; logoDP=4.283; NsEucl=0.916; NSW=0.915; rcor=5; rNcor=7; rlogoDP=2; rNsEucl=8; rNSW=6; rank_mean=5.600; match_rank=4 a 0 0 0 0 0 0 0 0 701 751 782 22 24 0 940 943 955 182 316 244 0 c 0 0 0 0 0 0 0 0 48 37 10 6 1 971 2 0 2 60 97 154 0 g 0 0 0 0 0 0 0 0 63 46 36 11 2 0 11 3 3 16 62 60 0 t 0 0 0 0 0 0 0 0 159 137 143 932 944 0 18 25 11 713 496 513 0

AHL25_AHL25_3_ArabidopsisPBM_rc_shift4 (AHL25:AHL25_3:ArabidopsisPBM_rc) 0.847 0.403 2.111 0.925 0.944 1 13 10 3 1 5.600 5
; positions_6nt_m2 versus AHL25_AHL25_3_ArabidopsisPBM_rc (AHL25:AHL25_3:ArabidopsisPBM_rc); m=5/13; ncol2=10; w=0; offset=4; strand=R; shift=4; score= 5.6; ----wAwTwWwWtw------- ; cor=0.847; Ncor=0.403; logoDP=2.111; NsEucl=0.925; NSW=0.944; rcor=1; rNcor=13; rlogoDP=10; rNsEucl=3; rNSW=1; rank_mean=5.600; match_rank=5 a 0 0 0 0 56 83 62 16 51 71 61 25 22 29 0 0 0 0 0 0 0 c 0 0 0 0 7 6 0 1 0 0 0 1 15 16 0 0 0 0 0 0 0 g 0 0 0 0 9 3 0 0 0 0 0 0 9 18 0 0 0 0 0 0 0 t 0 0 0 0 28 8 38 83 49 29 39 74 54 37 0 0 0 0 0 0 0

TCX3_MA1682.1_JASPAR_shift6 (TCX3:MA1682.1:JASPAR) 0.756 0.504 4.345 0.916 0.902 10 3 1 7 10 6.200 6
; positions_6nt_m2 versus TCX3_MA1682.1_JASPAR (TCX3:MA1682.1:JASPAR); m=6/13; ncol2=14; w=0; offset=6; strand=D; shift=6; score= 6.2; ------wwAAATTCAAATww- ; cor=0.756; Ncor=0.504; logoDP=4.345; NsEucl=0.916; NSW=0.902; rcor=10; rNcor=3; rlogoDP=1; rNsEucl=7; rNSW=10; rank_mean=6.200; match_rank=6 a 0 0 0 0 0 0 314 457 701 751 782 22 24 0 940 943 955 182 316 244 0 c 0 0 0 0 0 0 154 127 48 37 10 6 1 971 2 0 2 60 97 154 0 g 0 0 0 0 0 0 90 91 63 46 36 11 2 0 11 3 3 16 62 60 0 t 0 0 0 0 0 0 413 296 159 137 143 932 944 0 18 25 11 713 496 513 0

PK22848.1_M0587_1.02_CISBP_rc_shift9 (PK22848.1:M0587_1.02:CISBP_rc) 0.783 0.427 0.884 0.925 0.932 6 10 13 4 5 7.600 7
; positions_6nt_m2 versus PK22848.1_M0587_1.02_CISBP_rc (PK22848.1:M0587_1.02:CISBP_rc); m=7/13; ncol2=13; w=0; offset=9; strand=R; shift=9; score= 7.6; ---------twttwAAATTTt ; cor=0.783; Ncor=0.427; logoDP=0.884; NsEucl=0.925; NSW=0.932; rcor=6; rNcor=10; rlogoDP=13; rNsEucl=4; rNSW=5; rank_mean=7.600; match_rank=7 a 0 0 0 0 0 0 0 0 0 22 26 14 10 48 92 100 100 11 8 11 24 c 0 0 0 0 0 0 0 0 0 21 18 15 17 13 8 0 0 4 7 10 24 g 0 0 0 0 0 0 0 0 0 22 18 14 10 13 0 0 0 3 7 11 24 t 0 0 0 0 0 0 0 0 0 35 38 57 63 26 0 0 0 82 78 68 28

TSO1_MA1161.1_JASPAR_shift8 (TSO1:MA1161.1:JASPAR) 0.761 0.430 3.041 0.918 0.913 9 9 7 6 7 7.600 8
; positions_6nt_m2 versus TSO1_MA1161.1_JASPAR (TSO1:MA1161.1:JASPAR); m=8/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 7.6; --------wwwTwaAAATTYA ; cor=0.761; Ncor=0.430; logoDP=3.041; NsEucl=0.918; NSW=0.913; rcor=9; rNcor=9; rlogoDP=7; rNsEucl=6; rNSW=7; rank_mean=7.600; match_rank=8 a 0 0 0 0 0 0 0 0 136 97 71 54 86 160 228 232 244 0 0 0 214 c 0 0 0 0 0 0 0 0 15 9 11 6 38 26 0 1 0 8 0 69 0 g 0 0 0 0 0 0 0 0 28 28 8 9 15 41 35 16 0 3 0 0 45 t 0 0 0 0 0 0 0 0 85 130 174 195 125 37 1 15 20 253 264 195 5

ARID6_UN0351.1_JASPAR_rc_shift4 (ARID6:UN0351.1:JASPAR_rc) 0.727 0.519 2.697 0.916 0.893 12 1 9 9 11 8.400 9
; positions_6nt_m2 versus ARID6_UN0351.1_JASPAR_rc (ARID6:UN0351.1:JASPAR_rc); m=9/13; ncol2=15; w=0; offset=4; strand=R; shift=4; score= 8.4; ----wwTTCAATTAAwwww-- ; cor=0.727; Ncor=0.519; logoDP=2.697; NsEucl=0.916; NSW=0.893; rcor=12; rNcor=1; rlogoDP=9; rNsEucl=9; rNSW=11; rank_mean=8.400; match_rank=9 a 0 0 0 0 337 334 96 59 19 699 716 20 31 640 665 449 396 283 292 0 0 c 0 0 0 0 57 56 32 27 701 4 4 9 20 24 14 43 57 69 78 0 0 g 0 0 0 0 72 60 23 10 0 14 5 5 1 19 10 47 39 58 71 0 0 t 0 0 0 0 272 288 587 642 18 21 13 704 686 55 49 199 246 328 297 0 0

ARID6_UN0351.2_JASPAR_rc_shift4 (ARID6:UN0351.2:JASPAR_rc) 0.731 0.487 4.075 0.911 0.890 11 4 3 11 13 8.400 10
; positions_6nt_m2 versus ARID6_UN0351.2_JASPAR_rc (ARID6:UN0351.2:JASPAR_rc); m=10/13; ncol2=14; w=0; offset=4; strand=R; shift=4; score= 8.4; ----wwTTCAATTAAwww--- ; cor=0.731; Ncor=0.487; logoDP=4.075; NsEucl=0.911; NSW=0.890; rcor=11; rNcor=4; rlogoDP=3; rNsEucl=11; rNSW=13; rank_mean=8.400; match_rank=10 a 0 0 0 0 337 334 96 59 19 699 716 20 31 640 665 449 396 283 0 0 0 c 0 0 0 0 57 56 32 27 701 4 4 9 20 24 14 43 57 69 0 0 0 g 0 0 0 0 72 60 23 10 0 14 5 5 1 19 10 47 39 58 0 0 0 t 0 0 0 0 272 288 587 642 18 21 13 704 686 55 49 199 246 328 0 0 0

AT2G20110.ampDAP_M0354_AthalianaCistrome_rc_shift4 (AT2G20110.ampDAP:M0354:AthalianaCistrome_rc) 0.712 0.509 2.812 0.915 0.891 13 2 8 10 12 9.000 11
; positions_6nt_m2 versus AT2G20110.ampDAP_M0354_AthalianaCistrome_rc (AT2G20110.ampDAP:M0354:AthalianaCistrome_rc); m=11/13; ncol2=15; w=0; offset=4; strand=R; shift=4; score= 9; ----wttmAAATTyAAAwt-- ; cor=0.712; Ncor=0.509; logoDP=2.812; NsEucl=0.915; NSW=0.891; rcor=13; rNcor=2; rlogoDP=8; rNsEucl=10; rNSW=12; rank_mean=9.000; match_rank=11 a 0 0 0 0 225 144 137 218 499 484 466 0 1 0 479 600 600 169 138 0 0 c 0 0 0 0 32 81 110 156 16 6 0 1 0 318 0 0 0 98 116 0 0 g 0 0 0 0 38 0 46 82 79 18 24 1 0 0 121 0 0 9 81 0 0 t 0 0 0 0 305 375 307 144 6 92 110 598 599 282 0 0 0 324 265 0 0

At1g76110.DAP_M0146_AthalianaCistrome_rc_shift0 (At1g76110.DAP:M0146:AthalianaCistrome_rc) 0.771 0.404 1.547 0.907 0.904 7 11 11 12 8 9.800 12
; positions_6nt_m2 versus At1g76110.DAP_M0146_AthalianaCistrome_rc (At1g76110.DAP:M0146:AthalianaCistrome_rc); m=12/13; ncol2=11; w=0; offset=0; strand=R; shift=0; score= 9.8; aATTAAWTwww---------- ; cor=0.771; Ncor=0.404; logoDP=1.547; NsEucl=0.907; NSW=0.904; rcor=7; rNcor=11; rlogoDP=11; rNsEucl=12; rNSW=8; rank_mean=9.800; match_rank=12 a 236 507 0 0 507 507 351 0 159 249 171 0 0 0 0 0 0 0 0 0 0 c 99 0 0 0 0 0 0 0 54 69 36 0 0 0 0 0 0 0 0 0 0 g 65 0 0 0 0 0 0 0 76 43 51 0 0 0 0 0 0 0 0 0 0 t 107 0 507 507 0 0 156 507 218 146 249 0 0 0 0 0 0 0 0 0 0

HMGB9_UN0401.1_JASPAR_rc_shift0 (HMGB9:UN0401.1:JASPAR_rc) 0.771 0.404 1.547 0.907 0.904 8 12 12 13 9 10.800 13
; positions_6nt_m2 versus HMGB9_UN0401.1_JASPAR_rc (HMGB9:UN0401.1:JASPAR_rc); m=13/13; ncol2=11; w=0; offset=0; strand=R; shift=0; score= 10.8; aATTAAWTwww---------- ; cor=0.771; Ncor=0.404; logoDP=1.547; NsEucl=0.907; NSW=0.904; rcor=8; rNcor=12; rlogoDP=12; rNsEucl=13; rNSW=9; rank_mean=10.800; match_rank=13 a 465 1000 0 0 1000 1000 692 0 314 491 337 0 0 0 0 0 0 0 0 0 0 c 195 0 0 0 0 0 0 0 107 136 71.006 0 0 0 0 0 0 0 0 0 0 g 128 0 0 0 0 0 0 0 150 84.813 101 0 0 0 0 0 0 0 0 0 0 t 211 0 1000 1000 0 0 308 1000 429.98 288 491 0 0 0 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
positions_6nt_m2_shift0 (positions_6nt_m2)													; positions_6nt_m2; m=0 (reference); ncol1=21; shift=0; ncol=21; wwtTAAATAAATTAAAATTww ; Alignment reference a 280 282 147 107 580 565 597 62 631 630 643 104 105 641 632 592 594 106 129 258 291 c 134 120 61 62 51 45 36 55 30 33 23 36 50 34 36 31 33 51 49 110 87 g 106 107 64 52 35 35 45 48 30 19 20 29 38 31 33 28 48 60 59 150 134 t 248 259 496 547 102 123 90 603 77 86 82 599 575 62 67 117 93 551 531 250 256
ARID3_UN0388.1_JASPAR_shift8 (ARID3:UN0388.1:JASPAR)	0.827	0.467	3.188	0.930	0.936	3	5	5	1	2	3.200	1	; positions_6nt_m2 versus ARID3_UN0388.1_JASPAR (ARID3:UN0388.1:JASPAR); m=1/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 3.2; --------AAwwtrAAATYAA ; cor=0.827; Ncor=0.467; logoDP=3.188; NsEucl=0.930; NSW=0.936; rcor=3; rNcor=5; rlogoDP=5; rNsEucl=1; rNSW=2; rank_mean=3.200; match_rank=1 a 0 0 0 0 0 0 0 0 703 714 564 269 220 381 797 976 980 0 0 775.33 934 c 0 0 0 0 0 0 0 0 63.877 90.308 63.877 57.269 196 158.59 70.485 6.608 0 0 262 0 11.013 g 0 0 0 0 0 0 0 0 107.93 41.85 13.216 44.053 66.079 275.33 0 17.621 0 0 0 224.67 55.066 t 0 0 0 0 0 0 0 0 126 154 359 630 518 185 132 0 19.824 1000 738 0 0
AT2G17410.DAP_M0147_AthalianaCistrome_shift8 (AT2G17410.DAP:M0147:AthalianaCistrome)	0.827	0.467	3.188	0.930	0.936	4	6	6	2	3	4.200	2	; positions_6nt_m2 versus AT2G17410.DAP_M0147_AthalianaCistrome (AT2G17410.DAP:M0147:AthalianaCistrome); m=2/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 4.2; --------AAwwtrAAATYAA ; cor=0.827; Ncor=0.467; logoDP=3.188; NsEucl=0.930; NSW=0.936; rcor=4; rNcor=6; rlogoDP=6; rNsEucl=2; rNSW=3; rank_mean=4.200; match_rank=2 a 0 0 0 0 0 0 0 0 319 324 256 122 100 173 362 443 445 0 0 352 424 c 0 0 0 0 0 0 0 0 29 41 29 26 89 72 32 3 0 0 119 0 5 g 0 0 0 0 0 0 0 0 49 19 6 20 30 125 0 8 0 0 0 102 25 t 0 0 0 0 0 0 0 0 57 70 163 286 235 84 60 0 9 454 335 0 0
AT1G20910.DAP_M0143_AthalianaCistrome_rc_shift8 (AT1G20910.DAP:M0143:AthalianaCistrome_rc)	0.837	0.438	3.251	0.922	0.932	2	8	4	5	4	4.600	3	; positions_6nt_m2 versus AT1G20910.DAP_M0143_AthalianaCistrome_rc (AT1G20910.DAP:M0143:AthalianaCistrome_rc); m=3/13; ncol2=11; w=0; offset=8; strand=R; shift=8; score= 4.6; --------aAATTrAwTTw-- ; cor=0.837; Ncor=0.438; logoDP=3.251; NsEucl=0.922; NSW=0.932; rcor=2; rNcor=8; rlogoDP=4; rNsEucl=5; rNSW=4; rank_mean=4.600; match_rank=3 a 0 0 0 0 0 0 0 0 342 579 596 0 0 358 565 344 133 62 179 0 0 c 0 0 0 0 0 0 0 0 143 0 0 0 85 0 0 0 4 31 100 0 0 g 0 0 0 0 0 0 0 0 9 17 0 0 0 238 31 10 7 43 109 0 0 t 0 0 0 0 0 0 0 0 102 0 0 596 511 0 0 242 452 460 208 0 0
TCX3_MA1682.2_JASPAR_shift8 (TCX3:MA1682.2:JASPAR)	0.810	0.463	4.283	0.916	0.915	5	7	2	8	6	5.600	4	; positions_6nt_m2 versus TCX3_MA1682.2_JASPAR (TCX3:MA1682.2:JASPAR); m=4/13; ncol2=12; w=0; offset=8; strand=D; shift=8; score= 5.6; --------AAATTCAAATww- ; cor=0.810; Ncor=0.463; logoDP=4.283; NsEucl=0.916; NSW=0.915; rcor=5; rNcor=7; rlogoDP=2; rNsEucl=8; rNSW=6; rank_mean=5.600; match_rank=4 a 0 0 0 0 0 0 0 0 701 751 782 22 24 0 940 943 955 182 316 244 0 c 0 0 0 0 0 0 0 0 48 37 10 6 1 971 2 0 2 60 97 154 0 g 0 0 0 0 0 0 0 0 63 46 36 11 2 0 11 3 3 16 62 60 0 t 0 0 0 0 0 0 0 0 159 137 143 932 944 0 18 25 11 713 496 513 0
AHL25_AHL25_3_ArabidopsisPBM_rc_shift4 (AHL25:AHL25_3:ArabidopsisPBM_rc)	0.847	0.403	2.111	0.925	0.944	1	13	10	3	1	5.600	5	; positions_6nt_m2 versus AHL25_AHL25_3_ArabidopsisPBM_rc (AHL25:AHL25_3:ArabidopsisPBM_rc); m=5/13; ncol2=10; w=0; offset=4; strand=R; shift=4; score= 5.6; ----wAwTwWwWtw------- ; cor=0.847; Ncor=0.403; logoDP=2.111; NsEucl=0.925; NSW=0.944; rcor=1; rNcor=13; rlogoDP=10; rNsEucl=3; rNSW=1; rank_mean=5.600; match_rank=5 a 0 0 0 0 56 83 62 16 51 71 61 25 22 29 0 0 0 0 0 0 0 c 0 0 0 0 7 6 0 1 0 0 0 1 15 16 0 0 0 0 0 0 0 g 0 0 0 0 9 3 0 0 0 0 0 0 9 18 0 0 0 0 0 0 0 t 0 0 0 0 28 8 38 83 49 29 39 74 54 37 0 0 0 0 0 0 0
TCX3_MA1682.1_JASPAR_shift6 (TCX3:MA1682.1:JASPAR)	0.756	0.504	4.345	0.916	0.902	10	3	1	7	10	6.200	6	; positions_6nt_m2 versus TCX3_MA1682.1_JASPAR (TCX3:MA1682.1:JASPAR); m=6/13; ncol2=14; w=0; offset=6; strand=D; shift=6; score= 6.2; ------wwAAATTCAAATww- ; cor=0.756; Ncor=0.504; logoDP=4.345; NsEucl=0.916; NSW=0.902; rcor=10; rNcor=3; rlogoDP=1; rNsEucl=7; rNSW=10; rank_mean=6.200; match_rank=6 a 0 0 0 0 0 0 314 457 701 751 782 22 24 0 940 943 955 182 316 244 0 c 0 0 0 0 0 0 154 127 48 37 10 6 1 971 2 0 2 60 97 154 0 g 0 0 0 0 0 0 90 91 63 46 36 11 2 0 11 3 3 16 62 60 0 t 0 0 0 0 0 0 413 296 159 137 143 932 944 0 18 25 11 713 496 513 0
PK22848.1_M0587_1.02_CISBP_rc_shift9 (PK22848.1:M0587_1.02:CISBP_rc)	0.783	0.427	0.884	0.925	0.932	6	10	13	4	5	7.600	7	; positions_6nt_m2 versus PK22848.1_M0587_1.02_CISBP_rc (PK22848.1:M0587_1.02:CISBP_rc); m=7/13; ncol2=13; w=0; offset=9; strand=R; shift=9; score= 7.6; ---------twttwAAATTTt ; cor=0.783; Ncor=0.427; logoDP=0.884; NsEucl=0.925; NSW=0.932; rcor=6; rNcor=10; rlogoDP=13; rNsEucl=4; rNSW=5; rank_mean=7.600; match_rank=7 a 0 0 0 0 0 0 0 0 0 22 26 14 10 48 92 100 100 11 8 11 24 c 0 0 0 0 0 0 0 0 0 21 18 15 17 13 8 0 0 4 7 10 24 g 0 0 0 0 0 0 0 0 0 22 18 14 10 13 0 0 0 3 7 11 24 t 0 0 0 0 0 0 0 0 0 35 38 57 63 26 0 0 0 82 78 68 28
TSO1_MA1161.1_JASPAR_shift8 (TSO1:MA1161.1:JASPAR)	0.761	0.430	3.041	0.918	0.913	9	9	7	6	7	7.600	8	; positions_6nt_m2 versus TSO1_MA1161.1_JASPAR (TSO1:MA1161.1:JASPAR); m=8/13; ncol2=15; w=0; offset=8; strand=D; shift=8; score= 7.6; --------wwwTwaAAATTYA ; cor=0.761; Ncor=0.430; logoDP=3.041; NsEucl=0.918; NSW=0.913; rcor=9; rNcor=9; rlogoDP=7; rNsEucl=6; rNSW=7; rank_mean=7.600; match_rank=8 a 0 0 0 0 0 0 0 0 136 97 71 54 86 160 228 232 244 0 0 0 214 c 0 0 0 0 0 0 0 0 15 9 11 6 38 26 0 1 0 8 0 69 0 g 0 0 0 0 0 0 0 0 28 28 8 9 15 41 35 16 0 3 0 0 45 t 0 0 0 0 0 0 0 0 85 130 174 195 125 37 1 15 20 253 264 195 5
ARID6_UN0351.1_JASPAR_rc_shift4 (ARID6:UN0351.1:JASPAR_rc)	0.727	0.519	2.697	0.916	0.893	12	1	9	9	11	8.400	9	; positions_6nt_m2 versus ARID6_UN0351.1_JASPAR_rc (ARID6:UN0351.1:JASPAR_rc); m=9/13; ncol2=15; w=0; offset=4; strand=R; shift=4; score= 8.4; ----wwTTCAATTAAwwww-- ; cor=0.727; Ncor=0.519; logoDP=2.697; NsEucl=0.916; NSW=0.893; rcor=12; rNcor=1; rlogoDP=9; rNsEucl=9; rNSW=11; rank_mean=8.400; match_rank=9 a 0 0 0 0 337 334 96 59 19 699 716 20 31 640 665 449 396 283 292 0 0 c 0 0 0 0 57 56 32 27 701 4 4 9 20 24 14 43 57 69 78 0 0 g 0 0 0 0 72 60 23 10 0 14 5 5 1 19 10 47 39 58 71 0 0 t 0 0 0 0 272 288 587 642 18 21 13 704 686 55 49 199 246 328 297 0 0
ARID6_UN0351.2_JASPAR_rc_shift4 (ARID6:UN0351.2:JASPAR_rc)	0.731	0.487	4.075	0.911	0.890	11	4	3	11	13	8.400	10	; positions_6nt_m2 versus ARID6_UN0351.2_JASPAR_rc (ARID6:UN0351.2:JASPAR_rc); m=10/13; ncol2=14; w=0; offset=4; strand=R; shift=4; score= 8.4; ----wwTTCAATTAAwww--- ; cor=0.731; Ncor=0.487; logoDP=4.075; NsEucl=0.911; NSW=0.890; rcor=11; rNcor=4; rlogoDP=3; rNsEucl=11; rNSW=13; rank_mean=8.400; match_rank=10 a 0 0 0 0 337 334 96 59 19 699 716 20 31 640 665 449 396 283 0 0 0 c 0 0 0 0 57 56 32 27 701 4 4 9 20 24 14 43 57 69 0 0 0 g 0 0 0 0 72 60 23 10 0 14 5 5 1 19 10 47 39 58 0 0 0 t 0 0 0 0 272 288 587 642 18 21 13 704 686 55 49 199 246 328 0 0 0
AT2G20110.ampDAP_M0354_AthalianaCistrome_rc_shift4 (AT2G20110.ampDAP:M0354:AthalianaCistrome_rc)	0.712	0.509	2.812	0.915	0.891	13	2	8	10	12	9.000	11	; positions_6nt_m2 versus AT2G20110.ampDAP_M0354_AthalianaCistrome_rc (AT2G20110.ampDAP:M0354:AthalianaCistrome_rc); m=11/13; ncol2=15; w=0; offset=4; strand=R; shift=4; score= 9; ----wttmAAATTyAAAwt-- ; cor=0.712; Ncor=0.509; logoDP=2.812; NsEucl=0.915; NSW=0.891; rcor=13; rNcor=2; rlogoDP=8; rNsEucl=10; rNSW=12; rank_mean=9.000; match_rank=11 a 0 0 0 0 225 144 137 218 499 484 466 0 1 0 479 600 600 169 138 0 0 c 0 0 0 0 32 81 110 156 16 6 0 1 0 318 0 0 0 98 116 0 0 g 0 0 0 0 38 0 46 82 79 18 24 1 0 0 121 0 0 9 81 0 0 t 0 0 0 0 305 375 307 144 6 92 110 598 599 282 0 0 0 324 265 0 0
At1g76110.DAP_M0146_AthalianaCistrome_rc_shift0 (At1g76110.DAP:M0146:AthalianaCistrome_rc)	0.771	0.404	1.547	0.907	0.904	7	11	11	12	8	9.800	12	; positions_6nt_m2 versus At1g76110.DAP_M0146_AthalianaCistrome_rc (At1g76110.DAP:M0146:AthalianaCistrome_rc); m=12/13; ncol2=11; w=0; offset=0; strand=R; shift=0; score= 9.8; aATTAAWTwww---------- ; cor=0.771; Ncor=0.404; logoDP=1.547; NsEucl=0.907; NSW=0.904; rcor=7; rNcor=11; rlogoDP=11; rNsEucl=12; rNSW=8; rank_mean=9.800; match_rank=12 a 236 507 0 0 507 507 351 0 159 249 171 0 0 0 0 0 0 0 0 0 0 c 99 0 0 0 0 0 0 0 54 69 36 0 0 0 0 0 0 0 0 0 0 g 65 0 0 0 0 0 0 0 76 43 51 0 0 0 0 0 0 0 0 0 0 t 107 0 507 507 0 0 156 507 218 146 249 0 0 0 0 0 0 0 0 0 0
HMGB9_UN0401.1_JASPAR_rc_shift0 (HMGB9:UN0401.1:JASPAR_rc)	0.771	0.404	1.547	0.907	0.904	8	12	12	13	9	10.800	13	; positions_6nt_m2 versus HMGB9_UN0401.1_JASPAR_rc (HMGB9:UN0401.1:JASPAR_rc); m=13/13; ncol2=11; w=0; offset=0; strand=R; shift=0; score= 10.8; aATTAAWTwww---------- ; cor=0.771; Ncor=0.404; logoDP=1.547; NsEucl=0.907; NSW=0.904; rcor=8; rNcor=12; rlogoDP=12; rNsEucl=13; rNSW=9; rank_mean=10.800; match_rank=13 a 465 1000 0 0 1000 1000 692 0 314 491 337 0 0 0 0 0 0 0 0 0 0 c 195 0 0 0 0 0 0 0 107 136 71.006 0 0 0 0 0 0 0 0 0 0 g 128 0 0 0 0 0 0 0 150 84.813 101 0 0 0 0 0 0 0 0 0 0 t 211 0 1000 1000 0 0 308 1000 429.98 288 491 0 0 0 0 0 0 0 0 0 0