One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.111959_ecHkIx/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.111959_ecHkIx/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift7 ; 43 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_6nt_mkv4_m1_shift7 (oligos_6nt_mkv4_m1)                         
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=14; shift=7; ncol=21; -------hhwAAACCCTArww
; Alignment reference
a	0	0	0	0	0	0	0	707	843	682	2040	2348	2316	85	98	107	137	2311	987	947	710
c	0	0	0	0	0	0	0	666	637	331	79	38	48	2348	2291	2292	61	61	195	513	517
g	0	0	0	0	0	0	0	433	404	438	205	55	83	43	52	56	55	38	1105	313	368
t	0	0	0	0	0	0	0	718	640	1073	200	83	77	48	83	69	2271	114	237	751	929
TRB1_MA2032.1_JASPAR_shift9 (TRB1:MA2032.1:JASPAR) 0.979 0.769 7.108 0.971 0.991 2 4 4 1 2 2.600 1 
; oligos_6nt_mkv4_m1 versus TRB1_MA2032.1_JASPAR (TRB1:MA2032.1:JASPAR); m=1/42; ncol2=11; w=0; offset=2; strand=D; shift=9; score=    2.6; ---------aaAACCCTArw-
; cor=0.979; Ncor=0.769; logoDP=7.108; NsEucl=0.971; NSW=0.991; rcor=2; rNcor=4; rlogoDP=4; rNsEucl=1; rNSW=2; rank_mean=2.600; match_rank=1
a	0	0	0	0	0	0	0	0	0	1648	2956	4615	4355	138	86	71	108	4824	2829	1714	0
c	0	0	0	0	0	0	0	0	0	1082	451	128	40	4706	4755	4767	44	34	372	1073	0
g	0	0	0	0	0	0	0	0	0	1087	682	96	443	35	36	55	57	44	1303	474	0
t	0	0	0	0	0	0	0	0	0	1126	854	104	105	64	66	50	4734	41	439	1682	0
TRB1_MA2032.2_JASPAR_shift10 (TRB1:MA2032.2:JASPAR) 0.985 0.633 7.105 0.970 0.992 1 13 5 2 1 4.400 2 
; oligos_6nt_mkv4_m1 versus TRB1_MA2032.2_JASPAR (TRB1:MA2032.2:JASPAR); m=2/42; ncol2=9; w=0; offset=3; strand=D; shift=10; score=    4.4; ----------aAACCCTAr--
; cor=0.985; Ncor=0.633; logoDP=7.105; NsEucl=0.970; NSW=0.992; rcor=1; rNcor=13; rlogoDP=5; rNsEucl=2; rNSW=1; rank_mean=4.400; match_rank=2
a	0	0	0	0	0	0	0	0	0	0	2956	4615	4355	138	86	71	108	4824	2829	0	0
c	0	0	0	0	0	0	0	0	0	0	451	128	40	4706	4755	4767	44	34	372	0	0
g	0	0	0	0	0	0	0	0	0	0	682	96	443	35	36	55	57	44	1303	0	0
t	0	0	0	0	0	0	0	0	0	0	854	104	105	64	66	50	4734	41	439	0	0
TBP3_MA1355.1_JASPAR_shift6 (TBP3:MA1355.1:JASPAR) 0.894 0.835 7.074 0.948 0.961 11 2 6 8 9 7.200 3 
; oligos_6nt_mkv4_m1 versus TBP3_MA1355.1_JASPAR (TBP3:MA1355.1:JASPAR); m=3/42; ncol2=15; w=-1; offset=-1; strand=D; shift=6; score=    7.2; ------wwwtwwrCCCTAAwt
; cor=0.894; Ncor=0.835; logoDP=7.074; NsEucl=0.948; NSW=0.961; rcor=11; rNcor=2; rlogoDP=6; rNsEucl=8; rNSW=9; rank_mean=7.200; match_rank=3
a	0	0	0	0	0	0	275	247	183	120	320	399	353	45	0	0	0	598	505	197	92
c	0	0	0	0	0	0	91	122	146	85	8	3	0	553	598	598	0	0	0	92	121
g	0	0	0	0	0	0	69	50	50	93	90	1	245	0	0	0	0	0	91	11	28
t	0	0	0	0	0	0	163	179	219	300	180	195	0	0	0	0	598	0	2	298	357
TRB2_MA1355.2_JASPAR_shift10 (TRB2:MA1355.2:JASPAR) 0.897 0.705 7.068 0.935 0.954 10 6 7 10 11 8.800 4 
; oligos_6nt_mkv4_m1 versus TRB2_MA1355.2_JASPAR (TRB2:MA1355.2:JASPAR); m=4/42; ncol2=11; w=0; offset=3; strand=D; shift=10; score=    8.8; ----------wwrCCCTAAwt
; cor=0.897; Ncor=0.705; logoDP=7.068; NsEucl=0.935; NSW=0.954; rcor=10; rNcor=6; rlogoDP=7; rNsEucl=10; rNSW=11; rank_mean=8.800; match_rank=4
a	0	0	0	0	0	0	0	0	0	0	320	399	353	45	0	0	0	598	505	197	92
c	0	0	0	0	0	0	0	0	0	0	8	3	0	553	598	598	0	0	0	92	121
g	0	0	0	0	0	0	0	0	0	0	90	1	245	0	0	0	0	0	91	11	28
t	0	0	0	0	0	0	0	0	0	0	180	195	0	0	0	0	598	0	2	298	357
AT1G72740_MA1353.1_JASPAR_rc_shift8 (AT1G72740:MA1353.1:JASPAR_rc) 0.962 0.781 0.490 0.962 0.981 5 3 35 4 4 10.200 5 
; oligos_6nt_mkv4_m1 versus AT1G72740_MA1353.1_JASPAR_rc (AT1G72740:MA1353.1:JASPAR_rc); m=5/42; ncol2=15; w=0; offset=1; strand=R; shift=8; score=   10.2; --------mwAAACCCTAAwy
; cor=0.962; Ncor=0.781; logoDP=0.490; NsEucl=0.962; NSW=0.981; rcor=5; rNcor=3; rlogoDP=35; rNsEucl=4; rNSW=4; rank_mean=10.200; match_rank=5
a	0	0	0	0	0	0	0	0	161	178	471	577	571	31	3	0	1	596	490	259	69
c	0	0	0	0	0	0	0	0	281	73	19	0	0	566	597	599	4	0	1	77	230
g	0	0	0	0	0	0	0	0	82	120	33	1	28	3	0	1	0	1	107	10	23
t	0	0	0	0	0	0	0	0	76	229	77	22	1	0	0	0	595	3	2	254	278
PNRC2_UN0276.1_JASPAR_shift10 (PNRC2:UN0276.1:JASPAR) 0.961 0.549 6.584 0.948 0.978 6 24 9 7 6 10.400 6 
; oligos_6nt_mkv4_m1 versus PNRC2_UN0276.1_JASPAR (PNRC2:UN0276.1:JASPAR); m=6/42; ncol2=8; w=0; offset=3; strand=D; shift=10; score=   10.4; ----------AAWMCCTA---
; cor=0.961; Ncor=0.549; logoDP=6.584; NsEucl=0.948; NSW=0.978; rcor=6; rNcor=24; rlogoDP=9; rNsEucl=7; rNSW=6; rank_mean=10.400; match_rank=6
a	0	0	0	0	0	0	0	0	0	0	725	873	686	312	0	0	62	997	0	0	0
c	0	0	0	0	0	0	0	0	0	0	182	0	0	686	998	935	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	0	91	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	125	312	0	0	62	935	0	0	0	0
AT1G72740_MA1353.2_JASPAR_rc_shift10 (AT1G72740:MA1353.2:JASPAR_rc) 0.967 0.760 0.487 0.958 0.980 3 5 36 5 5 10.800 7 
; oligos_6nt_mkv4_m1 versus AT1G72740_MA1353.2_JASPAR_rc (AT1G72740:MA1353.2:JASPAR_rc); m=7/42; ncol2=11; w=0; offset=3; strand=R; shift=10; score=   10.8; ----------AAACCCTAAwy
; cor=0.967; Ncor=0.760; logoDP=0.487; NsEucl=0.958; NSW=0.980; rcor=3; rNcor=5; rlogoDP=36; rNsEucl=5; rNSW=5; rank_mean=10.800; match_rank=7
a	0	0	0	0	0	0	0	0	0	0	471	577	571	31	3	0	1	596	490	259	69
c	0	0	0	0	0	0	0	0	0	0	19	0	0	566	597	599	4	0	1	77	230
g	0	0	0	0	0	0	0	0	0	0	33	1	28	3	0	1	0	1	107	10	23
t	0	0	0	0	0	0	0	0	0	0	77	22	1	0	0	0	595	3	2	254	278
TBP3.ampDAP_M0621_AthalianaCistrome_rc_shift3 (TBP3.ampDAP:M0621:AthalianaCistrome_rc) 0.922 0.680 0.366 0.955 0.972 9 7 40 6 8 14.000 8 
; oligos_6nt_mkv4_m1 versus TBP3.ampDAP_M0621_AthalianaCistrome_rc (TBP3.ampDAP:M0621:AthalianaCistrome_rc); m=8/42; ncol2=19; w=-4; offset=-4; strand=R; shift=3; score=     14; ---maamhhtaARCCCTAAwy
; cor=0.922; Ncor=0.680; logoDP=0.366; NsEucl=0.955; NSW=0.972; rcor=9; rNcor=7; rlogoDP=40; rNsEucl=6; rNSW=8; rank_mean=14.000; match_rank=8
a	0	0	0	126	140	138	102	76	73	50	167	197	186	11	5	0	0	251	231	93	23
c	0	0	0	64	39	30	66	96	83	37	4	2	3	239	237	239	18	3	1	57	71
g	0	0	0	21	48	33	26	19	23	38	35	2	66	1	3	13	5	1	21	9	7
t	0	0	0	44	28	54	61	64	76	130	49	54	0	4	10	3	232	0	2	96	154
AT1G72740.ampDAP_M0588_AthalianaCistrome_rc_shift8 (AT1G72740.ampDAP:M0588:AthalianaCistrome_rc) 0.965 0.570 0.278 0.965 0.984 4 20 41 3 3 14.200 9 
; oligos_6nt_mkv4_m1 versus AT1G72740.ampDAP_M0588_AthalianaCistrome_rc (AT1G72740.ampDAP:M0588:AthalianaCistrome_rc); m=9/42; ncol2=21; w=0; offset=1; strand=R; shift=8; score=   14.2; --------mwAAACCCTAAwy
; cor=0.965; Ncor=0.570; logoDP=0.278; NsEucl=0.965; NSW=0.984; rcor=4; rNcor=20; rlogoDP=41; rNsEucl=3; rNSW=3; rank_mean=14.200; match_rank=9
a	0	0	0	0	0	0	0	0	181	161	410	562	558	37	0	1	0	592	454	216	82
c	0	0	0	0	0	0	0	0	233	132	13	0	0	555	592	591	0	0	3	140	206
g	0	0	0	0	0	0	0	0	74	146	47	2	34	0	0	0	0	0	135	24	38
t	0	0	0	0	0	0	0	0	104	153	122	28	0	0	0	0	592	0	0	212	266
1200010153_M1391_1.02_CISBP_shift11 (1200010153:M1391_1.02:CISBP) 0.882 0.630 5.269 0.930 0.952 15 14 18 12 12 14.200 10 
; oligos_6nt_mkv4_m1 versus 1200010153_M1391_1.02_CISBP (1200010153:M1391_1.02:CISBP); m=10/42; ncol2=10; w=0; offset=4; strand=D; shift=11; score=   14.2; -----------amCCCTAryy
; cor=0.882; Ncor=0.630; logoDP=5.269; NsEucl=0.930; NSW=0.952; rcor=15; rNcor=14; rlogoDP=18; rNsEucl=12; rNSW=12; rank_mean=14.200; match_rank=10
a	0	0	0	0	0	0	0	0	0	0	0	63	29	13	1	2	0	90	28	23	23
c	0	0	0	0	0	0	0	0	0	0	0	5	60	87	98	98	5	1	17	25	26
g	0	0	0	0	0	0	0	0	0	0	0	8	3	0	1	0	0	6	42	18	18
t	0	0	0	0	0	0	0	0	0	0	0	24	8	0	0	0	95	3	13	34	33
MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot_shift8 (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot) 0.854 0.671 6.560 0.924 0.937 21 8 10 16 16 14.200 11 
; oligos_6nt_mkv4_m1 versus MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot); m=11/42; ncol2=11; w=0; offset=1; strand=D; shift=8; score=   14.2; --------cywWrCCCTAr--
; cor=0.854; Ncor=0.671; logoDP=6.560; NsEucl=0.924; NSW=0.937; rcor=21; rNcor=8; rlogoDP=10; rNsEucl=16; rNSW=16; rank_mean=14.200; match_rank=11
a	0	0	0	0	0	0	0	0	9	8	26	70	65	10	0	0	0	93	61	0	0
c	0	0	0	0	0	0	0	0	66	54	6	2	0	90	100	100	0	2	4	0	0
g	0	0	0	0	0	0	0	0	10	10	13	1	35	0	0	0	0	4	34	0	0
t	0	0	0	0	0	0	0	0	15	28	55	27	0	0	0	0	100	1	1	0	0
TRP5_MA1802.1_JASPAR_shift7 (TRP5:MA1802.1:JASPAR) 0.892 0.637 3.124 0.935 0.958 13 11 31 11 10 15.200 12 
; oligos_6nt_mkv4_m1 versus TRP5_MA1802.1_JASPAR (TRP5:MA1802.1:JASPAR); m=12/42; ncol2=10; w=0; offset=0; strand=D; shift=7; score=   15.2; -------swwAAACCyy----
; cor=0.892; Ncor=0.637; logoDP=3.124; NsEucl=0.935; NSW=0.958; rcor=13; rNcor=11; rlogoDP=31; rNsEucl=11; rNSW=10; rank_mean=15.200; match_rank=12
a	0	0	0	0	0	0	0	190	303.26	343	845	852	745.83	44	26	91	191	0	0	0	0
c	0	0	0	0	0	0	0	351	239	61	19	24	125	776	931	518	334	0	0	0	0
g	0	0	0	0	0	0	0	281.34	109	57	119	28	99	7.35	17	70.135	109	0	0	0	0
t	0	0	0	0	0	0	0	178	349	538	17	95	31	173	26	321	366	0	0	0	0
LOC_Os01g51154_M1361_1.02_CISBP_shift11 (LOC_Os01g51154:M1361_1.02:CISBP) 0.872 0.623 4.354 0.928 0.948 18 15 24 13 13 16.600 13 
; oligos_6nt_mkv4_m1 versus LOC_Os01g51154_M1361_1.02_CISBP (LOC_Os01g51154:M1361_1.02:CISBP); m=13/42; ncol2=10; w=0; offset=4; strand=D; shift=11; score=   16.6; -----------wrmCCTArhy
; cor=0.872; Ncor=0.623; logoDP=4.354; NsEucl=0.928; NSW=0.948; rcor=18; rNcor=15; rlogoDP=24; rNsEucl=13; rNSW=13; rank_mean=16.600; match_rank=13
a	0	0	0	0	0	0	0	0	0	0	0	42	54	42	3	4	1	84	37	27	24
c	0	0	0	0	0	0	0	0	0	0	0	11	2	56	96	93	0	3	13	25	26
g	0	0	0	0	0	0	0	0	0	0	0	6	37	1	0	3	0	8	39	23	22
t	0	0	0	0	0	0	0	0	0	0	0	41	7	1	1	0	99	5	11	25	28
0100010593_M1389_1.02_CISBP_shift10 (0100010593:M1389_1.02:CISBP) 0.887 0.633 3.399 0.926 0.945 14 12 30 15 15 17.200 14 
; oligos_6nt_mkv4_m1 versus 0100010593_M1389_1.02_CISBP (0100010593:M1389_1.02:CISBP); m=14/42; ncol2=10; w=0; offset=3; strand=D; shift=10; score=   17.2; ----------wwAMCCTarw-
; cor=0.887; Ncor=0.633; logoDP=3.399; NsEucl=0.926; NSW=0.945; rcor=14; rNcor=12; rlogoDP=30; rNsEucl=15; rNSW=15; rank_mean=17.200; match_rank=14
a	0	0	0	0	0	0	0	0	0	0	39	41	78	27	5	8	2	59	34	28	0
c	0	0	0	0	0	0	0	0	0	0	10	6	0	69	87	85	5	11	18	24	0
g	0	0	0	0	0	0	0	0	0	0	20	5	15	1	3	4	1	16	27	19	0
t	0	0	0	0	0	0	0	0	0	0	31	48	7	3	5	3	92	14	21	29	0
TRP5_MA1802.2_JASPAR_shift9 (TRP5:MA1802.2:JASPAR) 0.945 0.472 3.093 0.937 0.972 7 34 32 9 7 17.800 15 
; oligos_6nt_mkv4_m1 versus TRP5_MA1802.2_JASPAR (TRP5:MA1802.2:JASPAR); m=15/42; ncol2=7; w=0; offset=2; strand=D; shift=9; score=   17.8; ---------wAAACCy-----
; cor=0.945; Ncor=0.472; logoDP=3.093; NsEucl=0.937; NSW=0.972; rcor=7; rNcor=34; rlogoDP=32; rNsEucl=9; rNSW=7; rank_mean=17.800; match_rank=15
a	0	0	0	0	0	0	0	0	0	343	845	852	746	44	26	91	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	61	19	24	125	776	931	518	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	57	119	28	99	7	17	70	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	538	17	95	31	173	26	321	0	0	0	0	0
MYB1-like_MA1030.1_JASPAR_shift11 (MYB1-like:MA1030.1:JASPAR) 0.872 0.623 4.293 0.928 0.948 19 16 26 14 14 17.800 16 
; oligos_6nt_mkv4_m1 versus MYB1-like_MA1030.1_JASPAR (MYB1-like:MA1030.1:JASPAR); m=16/42; ncol2=10; w=0; offset=4; strand=D; shift=11; score=   17.8; -----------wrmCCTArhy
; cor=0.872; Ncor=0.623; logoDP=4.293; NsEucl=0.928; NSW=0.948; rcor=19; rNcor=16; rlogoDP=26; rNsEucl=14; rNSW=14; rank_mean=17.800; match_rank=16
a	0	0	0	0	0	0	0	0	0	0	0	416	535	416	26	41	10	832	373	266	241
c	0	0	0	0	0	0	0	0	0	0	0	113	24	562	962	928	1	32	132	258	256
g	0	0	0	0	0	0	0	0	0	0	0	60	369	7	1	27	0	83	389	226	220
t	0	0	0	0	0	0	0	0	0	0	0	411	72	15	11	4	989	54	106	250	283
TRP2_MA1356.1_JASPAR_shift4 (TRP2:MA1356.1:JASPAR) 0.851 0.568 9.042 0.921 0.912 22 21 1 19 29 18.400 17 
; oligos_6nt_mkv4_m1 versus TRP2_MA1356.1_JASPAR (TRP2:MA1356.1:JASPAR); m=17/42; ncol2=21; w=-3; offset=-3; strand=D; shift=4; score=   18.4; ----AACCcTAAACCCTAAAC
; cor=0.851; Ncor=0.568; logoDP=9.042; NsEucl=0.921; NSW=0.912; rcor=22; rNcor=21; rlogoDP=1; rNsEucl=19; rNSW=29; rank_mean=18.400; match_rank=17
a	0	0	0	0	335	317	44	23	47	72	423	419	422	7	6	0	4	407	422	409	27
c	0	0	0	0	34	24	303	344	272	0	0	1	2	416	414	416	3	2	1	4	350
g	0	0	0	0	21	18	22	28	15	4	1	2	0	0	2	0	0	13	2	2	1
t	0	0	0	0	35	66	56	30	91	349	1	3	1	2	3	9	418	3	0	10	47
TRP2.ampDAP_M0612_AthalianaCistrome_shift3 (TRP2.ampDAP:M0612:AthalianaCistrome) 0.851 0.567 9.009 0.921 0.912 24 22 2 18 27 18.600 18 
; oligos_6nt_mkv4_m1 versus TRP2.ampDAP_M0612_AthalianaCistrome (TRP2.ampDAP:M0612:AthalianaCistrome); m=18/42; ncol2=21; w=-4; offset=-4; strand=D; shift=3; score=   18.6; ---AAACCCTAAACCCTAAAC
; cor=0.851; Ncor=0.567; logoDP=9.009; NsEucl=0.921; NSW=0.912; rcor=24; rNcor=22; rlogoDP=2; rNsEucl=18; rNSW=27; rank_mean=18.600; match_rank=18
a	0	0	0	90	85	87	0	9	7	12	103	104	101	2	1	0	5	99	99	97	7
c	0	0	0	3	2	1	85	88	75	2	0	0	3	102	103	102	0	0	0	0	80
g	0	0	0	2	4	1	5	5	5	1	1	0	0	0	0	0	0	4	3	2	1
t	0	0	0	9	13	15	14	2	17	89	0	0	0	0	0	2	99	1	2	5	16
MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot_shift6 (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot) 0.821 0.657 6.160 0.923 0.929 32 10 14 17 20 18.600 19 
; oligos_6nt_mkv4_m1 versus MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot); m=19/42; ncol2=13; w=-1; offset=-1; strand=D; shift=6; score=   18.6; ------mcCytwrCCCTAr--
; cor=0.821; Ncor=0.657; logoDP=6.160; NsEucl=0.923; NSW=0.929; rcor=32; rNcor=10; rlogoDP=14; rNsEucl=17; rNSW=20; rank_mean=18.600; match_rank=19
a	0	0	0	0	0	0	38	16	11	8	24	67	54	7	0	0	0	89	53	0	0
c	0	0	0	0	0	0	28	53	71	58	6	4	0	92	100	100	2	2	6	0	0
g	0	0	0	0	0	0	20	9	7	4	19	1	46	1	0	0	0	6	40	0	0
t	0	0	0	0	0	0	14	22	11	30	51	28	0	0	0	0	98	3	1	0	0
AL2G32420.t2_MYBRELATED_1_AT1G72740_EEAD0583_EEADannot_shift11 (AL2G32420.t2_MYBRELATED_1_AT1G72740:EEAD0583:EEADannot) 0.863 0.575 6.594 0.912 0.923 20 18 8 26 21 18.600 20 
; oligos_6nt_mkv4_m1 versus AL2G32420.t2_MYBRELATED_1_AT1G72740_EEAD0583_EEADannot (AL2G32420.t2_MYBRELATED_1_AT1G72740:EEAD0583:EEADannot); m=20/42; ncol2=11; w=0; offset=4; strand=D; shift=11; score=   18.6; -----------AACCCTAAAC
; cor=0.863; Ncor=0.575; logoDP=6.594; NsEucl=0.912; NSW=0.923; rcor=20; rNcor=18; rlogoDP=8; rNsEucl=26; rNSW=21; rank_mean=18.600; match_rank=20
a	0	0	0	0	0	0	0	0	0	0	0	97	96	7	2	2	5	96	95	93	3
c	0	0	0	0	0	0	0	0	0	0	0	1	1	81	86	96	3	0	2	4	86
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	3	0	1
t	0	0	0	0	0	0	0	0	0	0	0	2	3	12	7	2	92	3	0	3	10
LOC_Os01g51154.1_MYBRELATED_1_AT1G72740_EEAD0624_EEADannot_shift4 (LOC_Os01g51154.1_MYBRELATED_1_AT1G72740:EEAD0624:EEADannot) 0.840 0.593 6.315 0.917 0.918 27 17 13 21 24 20.400 21 
; oligos_6nt_mkv4_m1 versus LOC_Os01g51154.1_MYBRELATED_1_AT1G72740_EEAD0624_EEADannot (LOC_Os01g51154.1_MYBRELATED_1_AT1G72740:EEAD0624:EEADannot); m=21/42; ncol2=15; w=-3; offset=-3; strand=D; shift=4; score=   20.4; ----AACCCTAAACCCTAA--
; cor=0.840; Ncor=0.593; logoDP=6.315; NsEucl=0.917; NSW=0.918; rcor=27; rNcor=17; rlogoDP=13; rNsEucl=21; rNSW=24; rank_mean=20.400; match_rank=21
a	0	0	0	0	94	93	4	2	3	6	95	96	91	5	2	6	12	88	94	0	0
c	0	0	0	0	2	5	89	91	86	3	1	2	6	82	91	83	4	0	3	0	0
g	0	0	0	0	0	0	1	2	4	1	0	1	0	0	1	0	0	0	1	0	0
t	0	0	0	0	4	2	6	5	7	90	4	1	3	13	6	11	84	12	2	0	0
TRP1_MA1352.1_JASPAR_shift5 (TRP1:MA1352.1:JASPAR) 0.828 0.552 8.896 0.914 0.895 28 23 3 24 33 22.200 22 
; oligos_6nt_mkv4_m1 versus TRP1_MA1352.1_JASPAR (TRP1:MA1352.1:JASPAR); m=22/42; ncol2=21; w=-2; offset=-2; strand=D; shift=5; score=   22.2; -----ACCCTAAACCCTAAAC
; cor=0.828; Ncor=0.552; logoDP=8.896; NsEucl=0.914; NSW=0.895; rcor=28; rNcor=23; rlogoDP=3; rNsEucl=24; rNSW=33; rank_mean=22.200; match_rank=22
a	0	0	0	0	0	253	19	17	30	29	302	304	307	4	13	1	3	296	295	306	3
c	0	0	0	0	0	4	250	263	218	0	0	0	0	302	290	296	2	2	9	0	288
g	0	0	0	0	0	8	11	14	11	3	2	1	0	0	0	6	2	2	2	0	1
t	0	0	0	0	0	42	27	13	48	275	3	2	0	1	4	4	300	7	1	1	15
estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP_shift11 (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP) 0.843 0.542 4.030 0.912 0.931 26 25 28 25 17 24.200 23 
; oligos_6nt_mkv4_m1 versus estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP); m=23/42; ncol2=9; w=0; offset=4; strand=D; shift=11; score=   24.2; -----------wrmCCTArh-
; cor=0.843; Ncor=0.542; logoDP=4.030; NsEucl=0.912; NSW=0.931; rcor=26; rNcor=25; rlogoDP=28; rNsEucl=25; rNSW=17; rank_mean=24.200; match_rank=23
a	0	0	0	0	0	0	0	0	0	0	0	35	48	45	1	1	0	74	36	26	0
c	0	0	0	0	0	0	0	0	0	0	0	20	2	52	98	98	6	7	17	25	0
g	0	0	0	0	0	0	0	0	0	0	0	14	39	1	0	1	0	6	31	21	0
t	0	0	0	0	0	0	0	0	0	0	0	31	11	2	1	0	94	13	16	28	0
Solyc07g040920.2.1_MYBRELATED_1_AT1G72740_EEAD0654_EEADannot_shift12 (Solyc07g040920.2.1_MYBRELATED_1_AT1G72740:EEAD0654:EEADannot) 0.851 0.479 5.238 0.906 0.921 23 32 19 28 23 25.000 24 
; oligos_6nt_mkv4_m1 versus Solyc07g040920.2.1_MYBRELATED_1_AT1G72740_EEAD0654_EEADannot (Solyc07g040920.2.1_MYBRELATED_1_AT1G72740:EEAD0654:EEADannot); m=24/42; ncol2=11; w=0; offset=5; strand=D; shift=12; score=     25; ------------ACCCTAAAC
; cor=0.851; Ncor=0.479; logoDP=5.238; NsEucl=0.906; NSW=0.921; rcor=23; rNcor=32; rlogoDP=19; rNsEucl=28; rNSW=23; rank_mean=25.000; match_rank=24
a	0	0	0	0	0	0	0	0	0	0	0	0	97	8	4	3	6	96	99	92	5
c	0	0	0	0	0	0	0	0	0	0	0	0	1	84	86	93	6	0	0	5	77
g	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	1	0	1	0	2
t	0	0	0	0	0	0	0	0	0	0	0	0	2	7	6	4	87	4	0	3	16
XP_013589913.1_MYBRELATED_1_AT1G72740_EEAD0665_EEADannot_shift12 (XP_013589913.1_MYBRELATED_1_AT1G72740:EEAD0665:EEADannot) 0.851 0.478 5.176 0.906 0.921 25 33 20 27 22 25.400 25 
; oligos_6nt_mkv4_m1 versus XP_013589913.1_MYBRELATED_1_AT1G72740_EEAD0665_EEADannot (XP_013589913.1_MYBRELATED_1_AT1G72740:EEAD0665:EEADannot); m=25/42; ncol2=11; w=0; offset=5; strand=D; shift=12; score=   25.4; ------------ACCCTAAAC
; cor=0.851; Ncor=0.478; logoDP=5.176; NsEucl=0.906; NSW=0.921; rcor=25; rNcor=33; rlogoDP=20; rNsEucl=27; rNSW=22; rank_mean=25.400; match_rank=25
a	0	0	0	0	0	0	0	0	0	0	0	0	97	7	4	3	6	94	99	92	6
c	0	0	0	0	0	0	0	0	0	0	0	0	0	86	84	90	2	0	1	4	77
g	0	0	0	0	0	0	0	0	0	0	0	0	1	1	5	1	1	0	0	0	1
t	0	0	0	0	0	0	0	0	0	0	0	0	2	6	7	6	91	6	0	4	16
P0510F09.23_MA1030.2_JASPAR_shift11 (P0510F09.23:MA1030.2:JASPAR) 0.873 0.436 4.281 0.900 0.929 16 38 27 29 18 25.600 26 
; oligos_6nt_mkv4_m1 versus P0510F09.23_MA1030.2_JASPAR (P0510F09.23:MA1030.2:JASPAR); m=26/42; ncol2=7; w=0; offset=4; strand=D; shift=11; score=   25.6; -----------wrmCCTA---
; cor=0.873; Ncor=0.436; logoDP=4.281; NsEucl=0.900; NSW=0.929; rcor=16; rNcor=38; rlogoDP=27; rNsEucl=29; rNSW=18; rank_mean=25.600; match_rank=26
a	0	0	0	0	0	0	0	0	0	0	0	416	535	416	26	41	10	832	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	113	24	562	962	928	1	32	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	60	369	7	1	27	0	83	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	411	72	15	11	4	989	54	0	0	0
AT4G12670.ampDAP_M0623_AthalianaCistrome_shift0 (AT4G12670.ampDAP:M0623:AthalianaCistrome) 0.774 0.516 6.418 0.915 0.898 36 27 12 22 31 25.600 27 
; oligos_6nt_mkv4_m1 versus AT4G12670.ampDAP_M0623_AthalianaCistrome (AT4G12670.ampDAP:M0623:AthalianaCistrome); m=27/42; ncol2=21; w=-7; offset=-7; strand=D; shift=0; score=   25.6; mCTAAAYCmTAMACmYKAAAy
; cor=0.774; Ncor=0.516; logoDP=6.418; NsEucl=0.915; NSW=0.898; rcor=36; rNcor=27; rlogoDP=12; rNsEucl=22; rNSW=31; rank_mean=25.600; match_rank=27
a	21	0	0	45	62	61	0	1	21	0	58	43	61	0	17	0	0	61	44	61	3
c	40	61	0	15	0	0	43	58	40	0	0	18	0	62	42	46	0	0	15	0	41
g	0	1	0	0	0	1	1	1	1	0	2	1	0	0	0	0	17	0	2	1	0
t	1	0	62	2	0	0	18	2	0	62	2	0	1	0	3	16	45	1	1	0	18
OsTRBF3_MA2404.1_JASPAR_shift11 (OsTRBF3:MA2404.1:JASPAR) 0.872 0.436 4.315 0.899 0.929 17 39 25 30 19 26.000 28 
; oligos_6nt_mkv4_m1 versus OsTRBF3_MA2404.1_JASPAR (OsTRBF3:MA2404.1:JASPAR); m=28/42; ncol2=7; w=0; offset=4; strand=D; shift=11; score=     26; -----------wrmCCTA---
; cor=0.872; Ncor=0.436; logoDP=4.315; NsEucl=0.899; NSW=0.929; rcor=17; rNcor=39; rlogoDP=25; rNsEucl=30; rNSW=19; rank_mean=26.000; match_rank=28
a	0	0	0	0	0	0	0	0	0	0	0	415	534	416	25	41	10	831	0	0	0
c	0	0	0	0	0	0	0	0	0	0	0	113	24	562	962	928	0	31	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	59	369	6	1	26	0	82	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	411	71	14	11	3	988	53	0	0	0
AT1G72740_MA1353.1_JASPAR_shift7 (AT1G72740:MA1353.1:JASPAR) 0.944 0.881 8.741 0.956 0.973 8 1 39 42 42 26.400 29 
; oligos_6nt_mkv4_m1 versus AT1G72740_MA1353.1_JASPAR (AT1G72740:MA1353.1:JASPAR); m=29/42; ncol2=15; w=0; offset=0; strand=D; shift=7; score=   26.4; -------rrrwTTAGGGTTTw
; cor=0.944; Ncor=0.881; logoDP=8.741; NsEucl=0.956; NSW=0.973; rcor=8; rNcor=1; rlogoDP=39; rNsEucl=42; rNSW=42; rank_mean=26.400; match_rank=29
a	0	0	0	0	0	0	0	187	187	278	254	2	3	595	0	0	0	1	22	77	229
c	0	0	0	0	0	0	0	94	71	23	10	107	1	0	1	0	3	28	1	33	120
g	0	0	0	0	0	0	0	223	242	230	77	1	0	4	599	597	566	0	0	19	73
t	0	0	0	0	0	0	0	96	100	69	259	490	596	1	0	3	31	571	577	471	178
SRS7.DAP_M0745_AthalianaCistrome_shift3 (SRS7.DAP:M0745:AthalianaCistrome) 0.793 0.482 6.559 0.914 0.896 35 31 11 23 32 26.400 30 
; oligos_6nt_mkv4_m1 versus SRS7.DAP_M0745_AthalianaCistrome (SRS7.DAP:M0745:AthalianaCistrome); m=30/42; ncol2=23; w=-4; offset=-4; strand=D; shift=3; score=   26.4; ---AAACCCTAAACCCTAAAC
; cor=0.793; Ncor=0.482; logoDP=6.559; NsEucl=0.914; NSW=0.896; rcor=35; rNcor=31; rlogoDP=11; rNsEucl=23; rNSW=32; rank_mean=26.400; match_rank=30
a	0	0	0	24	22	25	0	0	2	0	23	21	22	1	2	0	0	24	17	23	2
c	0	0	0	0	0	0	22	24	23	0	0	0	0	22	21	21	0	0	0	1	21
g	0	0	0	0	1	0	1	1	0	0	0	1	1	1	0	1	0	0	4	0	0
t	0	0	0	1	2	0	2	0	0	25	2	3	2	1	2	3	25	1	4	1	2
AT2G33550.DAP_M0787_AthalianaCistrome_shift2 (AT2G33550.DAP:M0787:AthalianaCistrome) 0.748 0.512 4.600 0.919 0.914 38 28 23 20 25 26.800 31 
; oligos_6nt_mkv4_m1 versus AT2G33550.DAP_M0787_AthalianaCistrome (AT2G33550.DAP:M0787:AthalianaCistrome); m=31/42; ncol2=18; w=-5; offset=-5; strand=D; shift=2; score=   26.8; --waaaawawwwrCCCTwAa-
; cor=0.748; Ncor=0.512; logoDP=4.600; NsEucl=0.919; NSW=0.914; rcor=38; rNcor=28; rlogoDP=23; rNsEucl=20; rNSW=25; rank_mean=26.800; match_rank=31
a	0	0	91	126	126	102	128	136	188	119	127	85	164	14	0	0	5	171	268	210	0
c	0	0	40	57	47	80	78	73	50	44	47	7	4	285	338	323	10	7	26	25	0
g	0	0	57	74	83	77	57	37	35	34	76	54	147	0	0	0	2	0	26	25	0
t	0	0	150	81	82	79	75	92	65	141	88	192	23	39	0	15	321	160	18	78	0
TBP3_MA1355.1_JASPAR_shift4 (TBP3:MA1355.1:JASPAR) 0.893 0.658 7.064 0.947 0.961 12 9 34 41 40 27.200 32 
; oligos_6nt_mkv4_m1 versus TBP3_MA1355.1_JASPAR (TBP3:MA1355.1:JASPAR); m=32/42; ncol2=15; w=-3; offset=-3; strand=D; shift=4; score=   27.2; ----wwwtwwrCCCTAAwt--
; cor=0.893; Ncor=0.658; logoDP=7.064; NsEucl=0.947; NSW=0.961; rcor=12; rNcor=9; rlogoDP=34; rNsEucl=41; rNSW=40; rank_mean=27.200; match_rank=32
a	0	0	0	0	275	247	183	120	320	399	353	45	0	0	0	598	505	197	92	0	0
c	0	0	0	0	91	122	146	85	8	3	0	553	598	598	0	0	0	92	121	0	0
g	0	0	0	0	69	50	50	93	90	1	245	0	0	0	0	0	91	11	28	0	0
t	0	0	0	0	163	179	219	300	180	195	0	0	0	0	598	0	2	298	357	0	0
ATTRB2_M1346_1.02_CISBP_shift11 (ATTRB2:M1346_1.02:CISBP) 0.826 0.472 5.535 0.896 0.913 29 35 17 32 26 27.800 33 
; oligos_6nt_mkv4_m1 versus ATTRB2_M1346_1.02_CISBP (ATTRB2:M1346_1.02:CISBP); m=33/42; ncol2=8; w=0; offset=4; strand=D; shift=11; score=   27.8; -----------wrmCCTAr--
; cor=0.826; Ncor=0.472; logoDP=5.535; NsEucl=0.896; NSW=0.913; rcor=29; rNcor=35; rlogoDP=17; rNsEucl=32; rNSW=26; rank_mean=27.800; match_rank=33
a	0	0	0	0	0	0	0	0	0	0	0	37	35	37	0	0	0	98	46	0	0
c	0	0	0	0	0	0	0	0	0	0	0	13	0	63	100	100	1	0	7	0	0
g	0	0	0	0	0	0	0	0	0	0	0	7	61	0	0	0	0	1	40	0	0
t	0	0	0	0	0	0	0	0	0	0	0	43	4	0	0	0	99	1	7	0	0
TRB2_MA1073.1_JASPAR_shift11 (TRB2:MA1073.1:JASPAR) 0.825 0.471 5.555 0.895 0.912 30 36 16 33 28 28.600 34 
; oligos_6nt_mkv4_m1 versus TRB2_MA1073.1_JASPAR (TRB2:MA1073.1:JASPAR); m=34/42; ncol2=8; w=0; offset=4; strand=D; shift=11; score=   28.6; -----------wrmCCTAr--
; cor=0.825; Ncor=0.471; logoDP=5.555; NsEucl=0.895; NSW=0.912; rcor=30; rNcor=36; rlogoDP=16; rNsEucl=33; rNSW=28; rank_mean=28.600; match_rank=34
a	0	0	0	0	0	0	0	0	0	0	0	368	349	372	0	0	0	980	454	0	0
c	0	0	0	0	0	0	0	0	0	0	0	126	0	628	1000	1000	6	0	74	0	0
g	0	0	0	0	0	0	0	0	0	0	0	69	611	0	0	0	0	7	398	0	0
t	0	0	0	0	0	0	0	0	0	0	0	437	40	0	0	0	994	13	74	0	0
TRP2_MA1356.1_JASPAR_shift3 (TRP2:MA1356.1:JASPAR) 0.821 0.575 8.648 0.913 0.895 33 19 15 39 39 29.000 35 
; oligos_6nt_mkv4_m1 versus TRP2_MA1356.1_JASPAR (TRP2:MA1356.1:JASPAR); m=35/42; ncol2=21; w=-4; offset=-4; strand=D; shift=3; score=     29; ---AACCcTAAACCCTAAACC
; cor=0.821; Ncor=0.575; logoDP=8.648; NsEucl=0.913; NSW=0.895; rcor=33; rNcor=19; rlogoDP=15; rNsEucl=39; rNSW=39; rank_mean=29.000; match_rank=35
a	0	0	0	335	317	44	23	47	72	423	419	422	7	6	0	4	407	422	409	27	18
c	0	0	0	34	24	303	344	272	0	0	1	2	416	414	416	3	2	1	4	350	383
g	0	0	0	21	18	22	28	15	4	1	2	0	0	2	0	0	13	2	2	1	0
t	0	0	0	35	66	56	30	91	349	1	3	1	2	3	9	418	3	0	10	47	24
estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_shift10 (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP) 0.811 0.521 2.886 0.898 0.906 34 26 33 31 30 30.800 36 
; oligos_6nt_mkv4_m1 versus estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP); m=36/42; ncol2=9; w=0; offset=3; strand=D; shift=10; score=   30.8; ----------wwrmCCYar--
; cor=0.811; Ncor=0.521; logoDP=2.886; NsEucl=0.898; NSW=0.906; rcor=34; rNcor=26; rlogoDP=33; rNsEucl=31; rNSW=30; rank_mean=30.800; match_rank=36
a	0	0	0	0	0	0	0	0	0	0	30	44	56	47	3	8	0	51	27	0	0
c	0	0	0	0	0	0	0	0	0	0	22	7	3	51	97	88	29	18	21	0	0
g	0	0	0	0	0	0	0	0	0	0	17	12	25	0	0	4	3	14	33	0	0
t	0	0	0	0	0	0	0	0	0	0	31	37	16	2	0	0	68	17	19	0	0
TOE1_TOE1_3_ArabidopsisPBM_shift10 (TOE1:TOE1_3:ArabidopsisPBM) 0.715 0.511 4.640 0.886 0.870 40 29 22 35 36 32.400 37 
; oligos_6nt_mkv4_m1 versus TOE1_TOE1_3_ArabidopsisPBM (TOE1:TOE1_3:ArabidopsisPBM); m=37/42; ncol2=10; w=0; offset=3; strand=D; shift=10; score=   32.4; ----------wAACCTTAAm-
; cor=0.715; Ncor=0.511; logoDP=4.640; NsEucl=0.886; NSW=0.870; rcor=40; rNcor=29; rlogoDP=22; rNsEucl=35; rNSW=36; rank_mean=32.400; match_rank=37
a	0	0	0	0	0	0	0	0	0	0	26	74	84	1	2	4	3	95	84	41	0
c	0	0	0	0	0	0	0	0	0	0	14	3	2	92	83	1	3	3	1	35	0
g	0	0	0	0	0	0	0	0	0	0	10	2	2	3	13	1	2	1	10	7	0
t	0	0	0	0	0	0	0	0	0	0	50	21	12	4	2	94	92	1	5	17	0
TRP1_MA1352.1_JASPAR_shift3 (TRP1:MA1352.1:JASPAR) 0.822 0.500 8.551 0.914 0.897 31 30 29 40 41 34.200 38 
; oligos_6nt_mkv4_m1 versus TRP1_MA1352.1_JASPAR (TRP1:MA1352.1:JASPAR); m=38/42; ncol2=21; w=-4; offset=-4; strand=D; shift=3; score=   34.2; ---ACCCTAAACCCTAAACCC
; cor=0.822; Ncor=0.500; logoDP=8.551; NsEucl=0.914; NSW=0.897; rcor=31; rNcor=30; rlogoDP=29; rNsEucl=40; rNSW=41; rank_mean=34.200; match_rank=38
a	0	0	0	253	19	17	30	29	302	304	307	4	13	1	3	296	295	306	3	6	24
c	0	0	0	4	250	263	218	0	0	0	0	302	290	296	2	2	9	0	288	292	272
g	0	0	0	8	11	14	11	3	2	1	0	0	0	6	2	2	2	0	1	4	0
t	0	0	0	42	27	13	48	275	3	2	0	1	4	4	300	7	1	1	15	5	11
STY1_STY1_ArabidopsisPBM_rc_shift12 (STY1:STY1:ArabidopsisPBM_rc) 0.731 0.439 4.797 0.879 0.868 39 37 21 37 37 34.200 39 
; oligos_6nt_mkv4_m1 versus STY1_STY1_ArabidopsisPBM_rc (STY1:STY1:ArabidopsisPBM_rc); m=39/42; ncol2=10; w=0; offset=5; strand=R; shift=12; score=   34.2; ------------rCCCTAGGG
; cor=0.731; Ncor=0.439; logoDP=4.797; NsEucl=0.879; NSW=0.868; rcor=39; rNcor=37; rlogoDP=21; rNsEucl=37; rNSW=37; rank_mean=34.200; match_rank=39
a	0	0	0	0	0	0	0	0	0	0	0	0	39	6	5	1	1	97	1	3	2
c	0	0	0	0	0	0	0	0	0	0	0	0	24	86	91	95	1	1	3	1	5
g	0	0	0	0	0	0	0	0	0	0	0	0	27	6	1	3	1	1	95	91	87
t	0	0	0	0	0	0	0	0	0	0	0	0	10	2	3	1	97	1	1	5	6
NAC25_B73_1_m1_EEAD0471_EEADannot_rc_shift2 (NAC25_B73_1_m1:EEAD0471:EEADannot_rc) 0.764 0.402 0.486 0.895 0.890 37 42 37 34 35 37.000 40 
; oligos_6nt_mkv4_m1 versus NAC25_B73_1_m1_EEAD0471_EEADannot_rc (NAC25_B73_1_m1:EEAD0471:EEADannot_rc); m=40/42; ncol2=15; w=-5; offset=-5; strand=R; shift=2; score=     37; --mAAAacaAAAACTCT----
; cor=0.764; Ncor=0.402; logoDP=0.486; NsEucl=0.895; NSW=0.890; rcor=37; rNcor=42; rlogoDP=37; rNsEucl=34; rNSW=35; rank_mean=37.000; match_rank=40
a	0	0	44	68	87	91	58	23	53	81	86	97	94	0	5	0	0	0	0	0	0
c	0	0	46	20	2	2	14	46	19	10	0	2	0	94	2	100	4	0	0	0	0
g	0	0	2	12	3	5	15	13	5	7	1	0	6	0	0	0	0	0	0	0	0
t	0	0	8	0	8	2	13	18	23	2	13	1	0	6	93	0	96	0	0	0	0
Probable_6j4f_F_3D-footprint_rc_shift7 (Probable:6j4f_F:3D-footprint_rc) 0.713 0.408 0.461 0.885 0.893 41 40 38 36 34 37.800 41 
; oligos_6nt_mkv4_m1 versus Probable_6j4f_F_3D-footprint_rc (Probable:6j4f_F:3D-footprint_rc); m=41/42; ncol2=8; w=0; offset=0; strand=R; shift=7; score=   37.8; -------CTTnnACC------
; cor=0.713; Ncor=0.408; logoDP=0.461; NsEucl=0.885; NSW=0.893; rcor=41; rNcor=40; rlogoDP=38; rNsEucl=36; rNSW=34; rank_mean=37.800; match_rank=41
a	0	0	0	0	0	0	0	11	11	9	24	24	96	0	0	0	0	0	0	0	0
c	0	0	0	0	0	0	0	67	9	11	24	24	0	96	96	0	0	0	0	0	0
g	0	0	0	0	0	0	0	9	9	9	24	24	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	9	67	67	24	24	0	0	0	0	0	0	0	0	0
TRFL5_M1316_1.02_CISBP_rc_shift11 (TRFL5:M1316_1.02:CISBP_rc) 0.705 0.403 0.266 0.856 0.833 42 41 42 38 38 40.200 42 
; oligos_6nt_mkv4_m1 versus TRFL5_M1316_1.02_CISBP_rc (TRFL5:M1316_1.02:CISBP_rc); m=42/42; ncol2=8; w=0; offset=4; strand=R; shift=11; score=   40.2; -----------tGCCCTAr--
; cor=0.705; Ncor=0.403; logoDP=0.266; NsEucl=0.856; NSW=0.833; rcor=42; rNcor=41; rlogoDP=42; rNsEucl=38; rNSW=38; rank_mean=40.200; match_rank=42
a	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	100	33	0	0
c	0	0	0	0	0	0	0	0	0	0	0	15	0	100	100	100	0	0	14	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	100	0	0	0	0	0	40	0	0
t	0	0	0	0	0	0	0	0	0	0	0	61	0	0	0	0	100	0	13	0	0