/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices.tab 
 compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices.tab
 Program version       	1.118
 Slow mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_query_matrices.transfac
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.113844_0rOrvs/compare-matrices_query_matrices.transfac
		file1	1	12	4776	waATCAAATCwa
	file2	3463 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5		awmAGTTr
		file2		2		8		3		rkTAGTTr
		file2		3		8		5		wamaGTTr
		file2		4		8		1		GTTAGTTA
		file2		5		8		2		kwCwGTTr
		file2		6		8		2		GTTAGTTr
		file2		7		8		6		wwmaGTTr
		file2		8		8		2		rsTkGTTr
		file2		9		8		8		RkTwGKTr
		file2		10		8		1		TACTGTTG
		file2		11		8		4		WhhWGTTr
		...	3453 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	9	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	10	w1           	Width of the first matrix
	11	w2           	Width of the second matrix
	12	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	13	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	14	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	15	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	16	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	17	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	18	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	19	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	20	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	21	rcor         	Matching rank for cor
	22	rNcor        	Matching rank for Ncor
	23	rlogoDP      	Matching rank for logoDP
	24	rNsEucl      	Matching rank for NsEucl
	25	rNSW         	Matching rank for NSW
	26	rank_mean    	Mean of the matching ranks on all selected metrics
	27	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NSW NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank
oligos_6nt_mkv4_m5 TOB1_EEAD0572_EEADannot oligos_6nt_mkv4_m5 TOB1:EEAD0572:EEADannot 0.942 0.549 6.328 0.966 0.93021 12 7 7 12 0.5833 0.5833 1.0000 D 3 ...TCAAATC.. TCraATC 1 12 1 1 1 3.2000 1
oligos_6nt_mkv4_m5 WLIM2A.DAP_M0464_AthalianaCistrome oligos_6nt_mkv4_m5 WLIM2A.DAP:M0464:AthalianaCistrome 0.931 0.543 6.202 0.960 0.92405 12 7 7 12 0.5833 0.5833 1.0000 D 3 ...TCAAATC.. TCAAATs 2 13 2 2 2 4.2000 2
oligos_6nt_mkv4_m5 GATA20.ampDAP_M0282_AthalianaCistrome oligos_6nt_mkv4_m5 GATA20.ampDAP:M0282:AthalianaCistrome 0.733 0.676 3.358 0.906 0.91163 12 13 12 13 0.9231 1.0000 0.9231 R -1 waATCAAATCwa .TRATCMGATCRA 18 1 25 3 9 11.2000 3
oligos_6nt_mkv4_m5 GLYMA-04G093300_UN0418.1_JASPAR oligos_6nt_mkv4_m5 GLYMA-04G093300:UN0418.1:JASPAR 0.723 0.603 5.958 0.879 0.89001 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..ATCAAATCwa wwCTAATCww 23 4 3 16 24 14.0000 4
oligos_6nt_mkv4_m5 e_gw1.362.4.1_M1384_1.02_CISBP oligos_6nt_mkv4_m5 e_gw1.362.4.1:M1384_1.02:CISBP 0.715 0.596 3.388 0.896 0.89813 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..ATCAAATCwa asmrdATCtw 29 7 24 7 15 16.4000 5
oligos_6nt_mkv4_m5 fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP oligos_6nt_mkv4_m5 fgeneshCV_pg.C_scaffold_18000164:M0599_1.02:CISBP 0.783 0.542 0.214 0.915 0.90304 12 10 9 13 0.6923 0.7500 0.9000 R -1 waATCAAAT... .WWTTYAAAH 11 15 45 5 8 16.8000 6
oligos_6nt_mkv4_m5 HOX6_UN0864.1_JASPAR oligos_6nt_mkv4_m5 HOX6:UN0864.1:JASPAR 0.884 0.442 1.390 0.938 0.89817 12 6 6 12 0.5000 0.5000 1.0000 R 0 waATCA...... YAATCA 3 34 37 6 4 16.8000 7
oligos_6nt_mkv4_m5 HAT3_UN0862.1_JASPAR oligos_6nt_mkv4_m5 HAT3:UN0862.1:JASPAR 0.875 0.437 0.952 0.951 0.91002 12 6 6 12 0.5000 0.5000 1.0000 R 0 waATCA...... YAATCA 4 35 39 4 3 17.0000 8
oligos_6nt_mkv4_m5 TCX5_UN0411.2_JASPAR oligos_6nt_mkv4_m5 TCX5:UN0411.2:JASPAR 0.775 0.517 5.017 0.886 0.88042 12 8 8 12 0.6667 0.6667 1.0000 D 1 .aATCAAAT... aTTCAAAy 12 18 10 27 19 17.2000 9
oligos_6nt_mkv4_m5 TCX5_UN0411.1_JASPAR oligos_6nt_mkv4_m5 TCX5:UN0411.1:JASPAR 0.715 0.596 5.011 0.877 0.88907 12 10 10 12 0.8333 0.8333 1.0000 D 0 waATCAAATC.. aaTTCAAAyt 27 6 11 18 26 17.6000 10
oligos_6nt_mkv4_m5 AT4G29000_M0591_1.02_CISBP oligos_6nt_mkv4_m5 AT4G29000:M0591_1.02:CISBP 0.716 0.596 3.902 0.877 0.88911 12 10 10 12 0.8333 0.8333 1.0000 R 0 waATCAAATC.. AATTCAAAYT 26 5 21 17 25 18.8000 11
oligos_6nt_mkv4_m5 ARR14_M1324_1.02_CISBP oligos_6nt_mkv4_m5 ARR14:M1324_1.02:CISBP 0.706 0.588 3.202 0.893 0.89645 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..ATCAAATCwa asmrwATCtw 36 9 28 9 16 19.6000 12
oligos_6nt_mkv4_m5 RVE1_RVE1_2_ArabidopsisPBM oligos_6nt_mkv4_m5 RVE1:RVE1_2:ArabidopsisPBM 0.764 0.437 1.974 0.916 0.89725 12 10 8 14 0.5714 0.6667 0.8000 D -2 waATCAAA.... ..atATCwaw 15 36 34 8 7 20.0000 13
oligos_6nt_mkv4_m5 ARR1_M1327_1.02_CISBP oligos_6nt_mkv4_m5 ARR1:M1327_1.02:CISBP 0.705 0.587 3.303 0.892 0.89620 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..ATCAAATCwa asmrwATCtw 38 10 26 11 17 20.4000 14
oligos_6nt_mkv4_m5 HAT3_M0848_1.02_CISBP oligos_6nt_mkv4_m5 HAT3:M0848_1.02:CISBP 0.790 0.425 1.761 0.924 0.89580 12 8 7 13 0.5385 0.5833 0.8750 D -1 waATCAA..... .yAATCAw 10 41 35 14 5 21.0000 15
oligos_6nt_mkv4_m5 ARR1_MA0945.1_JASPAR oligos_6nt_mkv4_m5 ARR1:MA0945.1:JASPAR 0.704 0.587 3.248 0.892 0.89620 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..ATCAAATCwa asmrwATCtw 39 11 27 12 18 21.4000 16
oligos_6nt_mkv4_m5 TIFY2A_M0760_1.02_CISBP oligos_6nt_mkv4_m5 TIFY2A:M0760_1.02:CISBP 0.770 0.449 0.261 0.916 0.89017 12 7 7 12 0.5833 0.5833 1.0000 R 5 .....AAATCwa HSATCTD 13 31 43 15 6 21.6000 17
oligos_6nt_mkv4_m5 ATWOX13_M0853_1.02_CISBP oligos_6nt_mkv4_m5 ATWOX13:M0853_1.02:CISBP 0.810 0.436 2.998 0.904 0.88262 12 8 7 13 0.5385 0.5833 0.8750 D -1 waATCAA..... .CAATCAa 5 37 30 25 12 21.8000 18
oligos_6nt_mkv4_m5 HB88_UN0861.1_JASPAR oligos_6nt_mkv4_m5 HB88:UN0861.1:JASPAR 0.797 0.465 0.461 0.904 0.88313 12 7 7 12 0.5833 0.5833 1.0000 R 0 waATCAA..... CAATYAA 9 27 40 24 11 22.2000 19
oligos_6nt_mkv4_m5 GRMZM2G038252_M1209_1.02_CISBP oligos_6nt_mkv4_m5 GRMZM2G038252:M1209_1.02:CISBP 0.797 0.429 2.845 0.905 0.88327 12 8 7 13 0.5385 0.5833 0.8750 D -1 waATCAA..... .CAATYAa 8 39 31 23 10 22.2000 20
oligos_6nt_mkv4_m5 TCX3_MA1682.2_JASPAR oligos_6nt_mkv4_m5 TCX3:MA1682.2:JASPAR 0.702 0.594 5.726 0.864 0.88861 12 12 11 13 0.8462 0.9167 0.9167 D -1 waATCAAATCw. .AATTCAAATww 43 8 6 20 37 22.8000 21
oligos_6nt_mkv4_m5 WOX13_UN0414.1_JASPAR oligos_6nt_mkv4_m5 WOX13:UN0414.1:JASPAR 0.809 0.436 2.074 0.903 0.88252 12 8 7 13 0.5385 0.5833 0.8750 R -1 waATCAA..... .CAATCAA 6 38 32 26 13 23.0000 22
oligos_6nt_mkv4_m5 GATA19.ampDAP_M0295_AthalianaCistrome oligos_6nt_mkv4_m5 GATA19.ampDAP:M0295:AthalianaCistrome 0.706 0.647 0.257 0.882 0.89637 12 11 11 12 0.9167 0.9167 1.0000 R 1 .aATCAAATCwa RATCSGATCYR 37 2 44 10 22 23.0000 23
oligos_6nt_mkv4_m5 AHL20_MA0933.1_JASPAR oligos_6nt_mkv4_m5 AHL20:MA0933.1:JASPAR 0.730 0.487 3.050 0.882 0.87863 12 8 8 12 0.6667 0.6667 1.0000 D 1 .aATCAAAT... AATWAAwT 19 20 29 31 21 24.0000 24
oligos_6nt_mkv4_m5 MpGLK_EEAD0147_EEADannot oligos_6nt_mkv4_m5 MpGLK:EEAD0147:EEADannot 0.723 0.542 0.353 0.884 0.88656 12 9 9 12 0.7500 0.7500 1.0000 R 2 ..ATCAAATCw. KKCCAATSA 24 14 41 22 20 24.2000 25
oligos_6nt_mkv4_m5 GATA19_MA1323.1_JASPAR oligos_6nt_mkv4_m5 GATA19:MA1323.1:JASPAR 0.704 0.645 0.276 0.881 0.89598 12 11 11 12 0.9167 0.9167 1.0000 R 1 .aATCAAATCwa RATCVGATCBR 40 3 42 13 23 24.2000 26
oligos_6nt_mkv4_m5 TCX3_MA1682.1_JASPAR oligos_6nt_mkv4_m5 TCX3:MA1682.1:JASPAR 0.702 0.514 5.726 0.864 0.88861 12 14 11 15 0.7333 0.9167 0.7857 D -3 waATCAAATCw. ...AATTCAAATww 43 19 6 20 37 25.0000 27
oligos_6nt_mkv4_m5 AT3G49930.DAP_M0336_AthalianaCistrome oligos_6nt_mkv4_m5 AT3G49930.DAP:M0336:AthalianaCistrome 0.765 0.446 5.896 0.863 0.86035 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....CAAATCw. GAAATCw 14 32 4 42 39 26.2000 28
oligos_6nt_mkv4_m5 GATA19_MA1323.2_JASPAR oligos_6nt_mkv4_m5 GATA19:MA1323.2:JASPAR 0.718 0.538 3.814 0.864 0.87690 12 9 9 12 0.7500 0.7500 1.0000 R 1 .aATCAAATC.. RATCVGATC 25 16 22 33 36 26.4000 29
oligos_6nt_mkv4_m5 APETALA2a_EEAD0067_EEADannot oligos_6nt_mkv4_m5 APETALA2a:EEAD0067:EEADannot 0.809 0.404 5.809 0.870 0.85294 12 6 6 12 0.5000 0.5000 1.0000 D 2 ..ATCAAA.... AACAAA 7 47 5 46 29 26.8000 30
oligos_6nt_mkv4_m5 XP_013602065.1_C2C2GATA_1_AT3G60530_EEAD0671_EEADannot oligos_6nt_mkv4_m5 XP_013602065.1_C2C2GATA_1_AT3G60530:EEAD0671:EEADannot 0.711 0.457 4.521 0.868 0.87883 12 11 9 14 0.6429 0.7500 0.8182 D 3 ...TCAAATCwa tCAGATCYr.. 31 28 16 30 31 27.2000 31
oligos_6nt_mkv4_m5 Solyc10g018560.2.1_C2C2GATA_1_AT3G60530_EEAD0659_EEADannot oligos_6nt_mkv4_m5 Solyc10g018560.2.1_C2C2GATA_1_AT3G60530:EEAD0659:EEADannot 0.711 0.457 4.370 0.870 0.87999 12 11 9 14 0.6429 0.7500 0.8182 D 3 ...TCAAATCwa tCaGATCyr.. 32 29 19 28 28 27.2000 32
oligos_6nt_mkv4_m5 GATA3_M0769_1.02_CISBP oligos_6nt_mkv4_m5 GATA3:M0769_1.02:CISBP 0.747 0.427 0.116 0.901 0.88870 12 10 8 14 0.5714 0.6667 0.8000 R 4 ....CAAATCwa YRRATCTN.. 17 40 47 19 14 27.4000 33
oligos_6nt_mkv4_m5 HMGB9_UN0401.2_JASPAR oligos_6nt_mkv4_m5 HMGB9:UN0401.2:JASPAR 0.758 0.442 4.670 0.850 0.85341 12 7 7 12 0.5833 0.5833 1.0000 R 2 ..ATCAAAT... ATTAAWT 16 33 12 45 41 29.4000 34
oligos_6nt_mkv4_m5 LOC_Os10g40810.1_C2C2GATA_1_AT3G60530_EEAD0641_EEADannot oligos_6nt_mkv4_m5 LOC_Os10g40810.1_C2C2GATA_1_AT3G60530:EEAD0641:EEADannot 0.703 0.452 4.217 0.868 0.87910 12 11 9 14 0.6429 0.7500 0.8182 D 3 ...TCAAATCwa tcAGATCYr.. 42 30 20 29 30 30.2000 35
oligos_6nt_mkv4_m5 WRKY59_MA1304.2_JASPAR oligos_6nt_mkv4_m5 WRKY59:MA1304.2:JASPAR 0.725 0.414 4.611 0.864 0.86976 12 10 8 14 0.5714 0.6667 0.8000 D -2 waATCAAA.... ..wAGTCAAm 21 45 15 35 35 30.2000 36
oligos_6nt_mkv4_m5 GATA20_MA1324.1_JASPAR oligos_6nt_mkv4_m5 GATA20:MA1324.1:JASPAR 0.709 0.472 5.492 0.835 0.85623 12 8 8 12 0.6667 0.6667 1.0000 D 2 ..ATCAAATC.. ATCsGATC 33 21 8 44 47 30.6000 37
oligos_6nt_mkv4_m5 SOL1_M0590_1.02_CISBP oligos_6nt_mkv4_m5 SOL1:M0590_1.02:CISBP 0.703 0.469 3.463 0.864 0.86977 12 8 8 12 0.6667 0.6667 1.0000 R 1 .aATCAAAT... WTTYAAAY 41 24 23 34 34 31.2000 38
oligos_6nt_mkv4_m5 GATA11_MA1014.1_JASPAR oligos_6nt_mkv4_m5 GATA11:MA1014.1:JASPAR 0.708 0.472 4.657 0.845 0.86059 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....CAAATCwa CAGATCTA 34 22 13 41 46 31.2000 39
oligos_6nt_mkv4_m5 GATA11_M0759_1.02_CISBP oligos_6nt_mkv4_m5 GATA11:M0759_1.02:CISBP 0.708 0.472 4.649 0.845 0.86072 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....CAAATCwa CAGATCTA 35 23 14 40 45 31.4000 40
oligos_6nt_mkv4_m5 fgenesh1_pg.C_Chr_09.0001000301_M0598_1.02_CISBP oligos_6nt_mkv4_m5 fgenesh1_pg.C_Chr_09.0001000301:M0598_1.02:CISBP 0.712 0.534 0.123 0.867 0.87844 12 9 9 12 0.7500 0.7500 1.0000 R 0 waATCAAAT... MRKTYRWAY 30 17 46 32 32 31.4000 41
oligos_6nt_mkv4_m5 GATA10_M0758_1.02_CISBP oligos_6nt_mkv4_m5 GATA10:M0758_1.02:CISBP 0.701 0.467 4.470 0.848 0.86214 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....CAAATCwa CAGATCTA 45 25 18 37 42 33.4000 42
oligos_6nt_mkv4_m5 ARR10_MA0121.2_JASPAR oligos_6nt_mkv4_m5 ARR10:MA0121.2:JASPAR 0.725 0.423 1.457 0.867 0.86196 12 7 7 12 0.5833 0.5833 1.0000 R 4 ....CAAATCw. MRDATCT 20 42 36 39 33 34.0000 43
oligos_6nt_mkv4_m5 GATA10_MA1013.1_JASPAR oligos_6nt_mkv4_m5 GATA10:MA1013.1:JASPAR 0.700 0.467 4.474 0.848 0.86205 12 8 8 12 0.6667 0.6667 1.0000 R 4 ....CAAATCwa CAGATCTA 46 26 17 38 43 34.0000 44
oligos_6nt_mkv4_m5 Nuclear_6r2v_A_3D-footprint oligos_6nt_mkv4_m5 Nuclear:6r2v_A:3D-footprint 0.715 0.417 5.122 0.847 0.85199 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....CAAATCw. CCAATcc 28 44 9 47 44 34.4000 45
oligos_6nt_mkv4_m5 AT5G05090_MA1737.2_JASPAR oligos_6nt_mkv4_m5 AT5G05090:MA1737.2:JASPAR 0.724 0.423 2.026 0.862 0.85983 12 7 7 12 0.5833 0.5833 1.0000 R 4 ....CAAATCw. CGDATCT 22 43 33 43 40 36.2000 46
oligos_6nt_mkv4_m5 TIFY2B_M0762_1.02_CISBP oligos_6nt_mkv4_m5 TIFY2B:M0762_1.02:CISBP 0.700 0.408 1.178 0.871 0.86421 12 7 7 12 0.5833 0.5833 1.0000 R 4 ....CAAATCw. HWSATCT 47 46 38 36 27 38.8000 47 
 Host name	rsat
 Job started	2026-04-09.113844
 Job done	2026-04-09.113905
 Seconds	11.24
	user	11.24
	system	1.22
	cuser	6.51
;	csystem	1.79