One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.120643_ZEOkIJ/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.120643_ZEOkIJ/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift5 ; 14 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m2_shift5 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----wtCGTCTTCtt ; Alignment reference a 0 0 0 0 0 1507 1193 181 421 199 132 364 119 134 1390 1275 c 0 0 0 0 0 1166 1154 5022 189 134 5140 182 344 5175 937 1288 g 0 0 0 0 0 1397 1178 150 4657 146 170 651 95 148 1360 853 t 0 0 0 0 0 1621 2166 338 424 5212 249 4494 5133 234 2004 2275

TGA5_2_EEAD0137_EEADannot_rc_shift3 (TGA5_2:EEAD0137:EEADannot_rc) 0.781 0.573 0.342 0.918 0.927 4 2 12 1 3 4.400 1
; oligos_7nt_mkv5_m2 versus TGA5_2_EEAD0137_EEADannot_rc (TGA5_2:EEAD0137:EEADannot_rc); m=1/13; ncol2=15; w=-2; offset=-2; strand=R; shift=3; score= 4.4; ---tCwTCwYCwtCwy ; cor=0.781; Ncor=0.573; logoDP=0.342; NsEucl=0.918; NSW=0.927; rcor=4; rNcor=2; rlogoDP=12; rNsEucl=1; rNSW=3; rank_mean=4.400; match_rank=1 a 0 0 0 8 0 68 0 0 84 5 0 82 23 0 76 12 c 0 0 0 40 163 13 47 204 19 53 204 15 38 201 26 70 g 0 0 0 38 0 30 9 0 29 0 0 47 6 0 18 12 t 0 0 0 118 41 93 148 0 72 146 0 60 137 3 84 110

NAC_3swp_A_3D-footprint_rc_shift10 (NAC:3swp_A:3D-footprint_rc) 0.911 0.414 0.485 0.911 0.960 1 13 8 2 1 5.000 2
; oligos_7nt_mkv5_m2 versus NAC_3swp_A_3D-footprint_rc (NAC:3swp_A:3D-footprint_rc); m=2/13; ncol2=5; w=0; offset=5; strand=R; shift=10; score= 5; ----------CTTCG- ; cor=0.911; Ncor=0.414; logoDP=0.485; NsEucl=0.911; NSW=0.960; rcor=1; rNcor=13; rlogoDP=8; rNsEucl=2; rNSW=1; rank_mean=5.000; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 9 9 0 9 0 c 0 0 0 0 0 0 0 0 0 0 96 11 11 96 11 0 g 0 0 0 0 0 0 0 0 0 0 0 9 9 0 67 0 t 0 0 0 0 0 0 0 0 0 0 0 67 67 0 9 0

XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot_shift2 (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot) 0.805 0.517 3.925 0.901 0.911 3 7 3 7 5 5.000 3
; oligos_7nt_mkv5_m2 versus XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot); m=3/13; ncol2=12; w=-3; offset=-3; strand=D; shift=2; score= 5; --CgbTTCrwCTTC-- ; cor=0.805; Ncor=0.517; logoDP=3.925; NsEucl=0.901; NSW=0.911; rcor=3; rNcor=7; rlogoDP=3; rNsEucl=7; rNSW=5; rank_mean=5.000; match_rank=3 a 0 0 0 1 6 0 0 14 48 29 13 0 1 0 0 0 c 0 0 99 22 26 1 15 83 0 10 76 2 5 95 0 0 g 0 0 0 58 28 0 0 2 51 11 1 0 0 0 0 0 t 0 0 1 19 40 99 85 1 1 50 10 98 94 5 0 0

AT5G22990.DAP_M0312_AthalianaCistrome_shift6 (AT5G22990.DAP:M0312:AthalianaCistrome) 0.776 0.485 3.780 0.908 0.915 5 10 4 3 4 5.200 4
; oligos_7nt_mkv5_m2 versus AT5G22990.DAP_M0312_AthalianaCistrome (AT5G22990.DAP:M0312:AthalianaCistrome); m=4/13; ncol2=15; w=0; offset=1; strand=D; shift=6; score= 5.2; ------wCGwcwTCGw ; cor=0.776; Ncor=0.485; logoDP=3.780; NsEucl=0.908; NSW=0.915; rcor=5; rNcor=10; rlogoDP=4; rNsEucl=3; rNSW=4; rank_mean=5.200; match_rank=4 a 0 0 0 0 0 0 169 0 32 220 133 249 44 0 17 232 c 0 0 0 0 0 0 79 571 2 13 269 3 51 584 4 25 g 0 0 0 0 0 0 10 0 528 28 41 108 2 0 547 20 t 0 0 0 0 0 0 326 13 22 323 141 224 487 0 16 307

ONAC127_UN0429.2_JASPAR_rc_shift9 (ONAC127:UN0429.2:JASPAR_rc) 0.867 0.552 0.476 0.898 0.927 2 4 9 10 2 5.400 5
; oligos_7nt_mkv5_m2 versus ONAC127_UN0429.2_JASPAR_rc (ONAC127:UN0429.2:JASPAR_rc); m=5/13; ncol2=7; w=0; offset=4; strand=R; shift=9; score= 5.4; ---------TCTTCCT ; cor=0.867; Ncor=0.552; logoDP=0.476; NsEucl=0.898; NSW=0.927; rcor=2; rNcor=4; rlogoDP=9; rNsEucl=10; rNSW=2; rank_mean=5.400; match_rank=5 a 0 0 0 0 0 0 0 0 0 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 0 0 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 0 0 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 0 0 51 1 53 50 1 0 49

Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc_shift1 (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc) 0.760 0.557 0.408 0.908 0.906 9 3 11 4 6 6.600 6
; oligos_7nt_mkv5_m2 versus Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc); m=6/13; ncol2=15; w=-4; offset=-4; strand=R; shift=1; score= 6.6; -ACskTTCrwCTTCyy ; cor=0.760; Ncor=0.557; logoDP=0.408; NsEucl=0.908; NSW=0.906; rcor=9; rNcor=3; rlogoDP=11; rNsEucl=4; rNSW=6; rank_mean=6.600; match_rank=6 a 0 74 0 1 3 0 1 11 51 29 10 0 2 0 0 16 c 0 7 98 28 22 1 12 82 0 8 79 3 8 95 65 43 g 0 4 0 49 28 0 0 4 48 14 1 0 0 0 1 14 t 0 15 2 22 47 99 87 3 1 49 10 97 90 5 34 27

AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot_shift1 (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot) 0.769 0.513 3.951 0.900 0.901 7 8 2 8 10 7.000 7
; oligos_7nt_mkv5_m2 versus AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot); m=7/13; ncol2=14; w=-4; offset=-4; strand=D; shift=1; score= 7; -ACskTTCrwCTTCy- ; cor=0.769; Ncor=0.513; logoDP=3.951; NsEucl=0.900; NSW=0.901; rcor=7; rNcor=8; rlogoDP=2; rNsEucl=8; rNSW=10; rank_mean=7.000; match_rank=7 a 0 78 0 0 7 0 1 13 54 28 7 0 0 1 0 0 c 0 4 98 26 24 1 15 81 0 8 85 1 12 96 63 0 g 0 4 0 52 27 0 0 4 46 14 1 0 0 0 1 0 t 0 14 2 22 42 99 84 2 0 50 7 99 88 3 36 0

ONAC127_UN0429.1_JASPAR_rc_shift7 (ONAC127:UN0429.1:JASPAR_rc) 0.775 0.536 0.530 0.895 0.902 6 5 7 11 9 7.600 8
; oligos_7nt_mkv5_m2 versus ONAC127_UN0429.1_JASPAR_rc (ONAC127:UN0429.1:JASPAR_rc); m=8/13; ncol2=11; w=0; offset=2; strand=R; shift=7; score= 7.6; -------brTCTTCCT ; cor=0.775; Ncor=0.536; logoDP=0.530; NsEucl=0.895; NSW=0.902; rcor=6; rNcor=5; rlogoDP=7; rNsEucl=11; rNSW=9; rank_mean=7.600; match_rank=8 a 0 0 0 0 0 0 0 5 17 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 21 11 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 15 15 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 14 12 51 1 53 50 1 0 49

Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot_shift0 (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot) 0.769 0.480 3.573 0.902 0.904 8 11 6 6 7 7.600 9
; oligos_7nt_mkv5_m2 versus Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot); m=9/13; ncol2=15; w=-5; offset=-5; strand=D; shift=0; score= 7.6; GACgbTTCrwCTTCy- ; cor=0.769; Ncor=0.480; logoDP=3.573; NsEucl=0.902; NSW=0.904; rcor=8; rNcor=11; rlogoDP=6; rNsEucl=6; rNSW=7; rank_mean=7.600; match_rank=9 a 20 74 0 0 16 0 0 16 52 30 12 0 4 2 2 0 c 0 2 99 20 26 1 22 74 0 8 81 2 2 93 66 0 g 80 8 0 66 29 0 0 8 48 8 1 0 4 2 1 0 t 0 16 1 14 29 99 78 2 0 54 6 98 90 3 31 0

bZIP44_2_EEAD0099_EEADannot_rc_shift3 (bZIP44_2:EEAD0099:EEADannot_rc) 0.708 0.519 0.472 0.906 0.902 11 6 10 5 8 8.000 10
; oligos_7nt_mkv5_m2 versus bZIP44_2_EEAD0099_EEADannot_rc (bZIP44_2:EEAD0099:EEADannot_rc); m=10/13; ncol2=15; w=-2; offset=-2; strand=R; shift=3; score= 8; ---TCATCaTCayCrt ; cor=0.708; Ncor=0.519; logoDP=0.472; NsEucl=0.906; NSW=0.902; rcor=11; rNcor=6; rlogoDP=10; rNsEucl=5; rNSW=8; rank_mean=8.000; match_rank=10 a 0 0 0 7 0 136 1 0 99 11 0 107 10 5 106 11 c 0 0 0 14 199 18 20 180 31 19 193 38 65 170 29 44 g 0 0 0 10 0 20 21 1 38 2 3 27 0 0 50 15 t 0 0 0 169 1 26 158 19 32 168 4 28 125 25 15 130

AT2G15740.DAP_M0317_AthalianaCistrome_rc_shift6 (AT2G15740.DAP:M0317:AthalianaCistrome_rc) 0.714 0.595 0.310 0.899 0.898 10 1 13 9 11 8.800 11
; oligos_7nt_mkv5_m2 versus AT2G15740.DAP_M0317_AthalianaCistrome_rc (AT2G15740.DAP:M0317:AthalianaCistrome_rc); m=11/13; ncol2=11; w=0; offset=1; strand=R; shift=6; score= 8.8; ------wCGtcryCGw ; cor=0.714; Ncor=0.595; logoDP=0.310; NsEucl=0.899; NSW=0.898; rcor=10; rNcor=1; rlogoDP=13; rNsEucl=9; rNSW=11; rank_mean=8.800; match_rank=11 a 0 0 0 0 0 0 171 13 57 112 118 313 65 0 1 241 c 0 0 0 0 0 0 91 525 6 112 339 0 168 593 0 40 g 0 0 0 0 0 0 16 22 479 50 21 169 1 0 599 24 t 0 0 0 0 0 0 322 40 58 326 122 118 366 7 0 295

BZIP105_Mo17_1_EEAD0239_EEADannot_shift7 (BZIP105_Mo17_1:EEAD0239:EEADannot) 0.701 0.510 4.139 0.868 0.860 13 9 1 12 13 9.600 12
; oligos_7nt_mkv5_m2 versus BZIP105_Mo17_1_EEAD0239_EEADannot (BZIP105_Mo17_1:EEAD0239:EEADannot); m=12/13; ncol2=8; w=0; offset=2; strand=D; shift=7; score= 9.6; -------yGtCGTCA- ; cor=0.701; Ncor=0.510; logoDP=4.139; NsEucl=0.868; NSW=0.860; rcor=13; rNcor=9; rlogoDP=1; rNsEucl=12; rNSW=13; rank_mean=9.600; match_rank=12 a 0 0 0 0 0 0 0 0 8 23 0 17 0 0 83 0 c 0 0 0 0 0 0 0 50 0 17 76 0 2 100 3 0 g 0 0 0 0 0 0 0 0 92 0 0 83 0 0 14 0 t 0 0 0 0 0 0 0 50 0 60 24 0 98 0 0 0

TGA1A_MA0129.1_JASPAR_shift5 (TGA1A:MA0129.1:JASPAR) 0.706 0.449 3.641 0.861 0.865 12 12 5 13 12 10.800 13
; oligos_7nt_mkv5_m2 versus TGA1A_MA0129.1_JASPAR (TGA1A:MA0129.1:JASPAR); m=13/13; ncol2=7; w=0; offset=0; strand=D; shift=5; score= 10.8; -----hACGTCA---- ; cor=0.706; Ncor=0.449; logoDP=3.641; NsEucl=0.861; NSW=0.865; rcor=12; rNcor=12; rlogoDP=5; rNsEucl=13; rNSW=12; rank_mean=10.800; match_rank=13 a 0 0 0 0 0 4 13 0 2 1 0 13 0 0 0 0 c 0 0 0 0 0 4 0 14 0 0 15 0 0 0 0 0 g 0 0 0 0 0 0 1 0 13 0 0 1 0 0 0 0 t 0 0 0 0 0 7 1 1 0 14 0 1 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m2_shift5 (oligos_7nt_mkv5_m2)													; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=5; ncol=16; -----wtCGTCTTCtt ; Alignment reference a 0 0 0 0 0 1507 1193 181 421 199 132 364 119 134 1390 1275 c 0 0 0 0 0 1166 1154 5022 189 134 5140 182 344 5175 937 1288 g 0 0 0 0 0 1397 1178 150 4657 146 170 651 95 148 1360 853 t 0 0 0 0 0 1621 2166 338 424 5212 249 4494 5133 234 2004 2275
TGA5_2_EEAD0137_EEADannot_rc_shift3 (TGA5_2:EEAD0137:EEADannot_rc)	0.781	0.573	0.342	0.918	0.927	4	2	12	1	3	4.400	1	; oligos_7nt_mkv5_m2 versus TGA5_2_EEAD0137_EEADannot_rc (TGA5_2:EEAD0137:EEADannot_rc); m=1/13; ncol2=15; w=-2; offset=-2; strand=R; shift=3; score= 4.4; ---tCwTCwYCwtCwy ; cor=0.781; Ncor=0.573; logoDP=0.342; NsEucl=0.918; NSW=0.927; rcor=4; rNcor=2; rlogoDP=12; rNsEucl=1; rNSW=3; rank_mean=4.400; match_rank=1 a 0 0 0 8 0 68 0 0 84 5 0 82 23 0 76 12 c 0 0 0 40 163 13 47 204 19 53 204 15 38 201 26 70 g 0 0 0 38 0 30 9 0 29 0 0 47 6 0 18 12 t 0 0 0 118 41 93 148 0 72 146 0 60 137 3 84 110
NAC_3swp_A_3D-footprint_rc_shift10 (NAC:3swp_A:3D-footprint_rc)	0.911	0.414	0.485	0.911	0.960	1	13	8	2	1	5.000	2	; oligos_7nt_mkv5_m2 versus NAC_3swp_A_3D-footprint_rc (NAC:3swp_A:3D-footprint_rc); m=2/13; ncol2=5; w=0; offset=5; strand=R; shift=10; score= 5; ----------CTTCG- ; cor=0.911; Ncor=0.414; logoDP=0.485; NsEucl=0.911; NSW=0.960; rcor=1; rNcor=13; rlogoDP=8; rNsEucl=2; rNSW=1; rank_mean=5.000; match_rank=2 a 0 0 0 0 0 0 0 0 0 0 0 9 9 0 9 0 c 0 0 0 0 0 0 0 0 0 0 96 11 11 96 11 0 g 0 0 0 0 0 0 0 0 0 0 0 9 9 0 67 0 t 0 0 0 0 0 0 0 0 0 0 0 67 67 0 9 0
XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot_shift2 (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot)	0.805	0.517	3.925	0.901	0.911	3	7	3	7	5	5.000	3	; oligos_7nt_mkv5_m2 versus XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot); m=3/13; ncol2=12; w=-3; offset=-3; strand=D; shift=2; score= 5; --CgbTTCrwCTTC-- ; cor=0.805; Ncor=0.517; logoDP=3.925; NsEucl=0.901; NSW=0.911; rcor=3; rNcor=7; rlogoDP=3; rNsEucl=7; rNSW=5; rank_mean=5.000; match_rank=3 a 0 0 0 1 6 0 0 14 48 29 13 0 1 0 0 0 c 0 0 99 22 26 1 15 83 0 10 76 2 5 95 0 0 g 0 0 0 58 28 0 0 2 51 11 1 0 0 0 0 0 t 0 0 1 19 40 99 85 1 1 50 10 98 94 5 0 0
AT5G22990.DAP_M0312_AthalianaCistrome_shift6 (AT5G22990.DAP:M0312:AthalianaCistrome)	0.776	0.485	3.780	0.908	0.915	5	10	4	3	4	5.200	4	; oligos_7nt_mkv5_m2 versus AT5G22990.DAP_M0312_AthalianaCistrome (AT5G22990.DAP:M0312:AthalianaCistrome); m=4/13; ncol2=15; w=0; offset=1; strand=D; shift=6; score= 5.2; ------wCGwcwTCGw ; cor=0.776; Ncor=0.485; logoDP=3.780; NsEucl=0.908; NSW=0.915; rcor=5; rNcor=10; rlogoDP=4; rNsEucl=3; rNSW=4; rank_mean=5.200; match_rank=4 a 0 0 0 0 0 0 169 0 32 220 133 249 44 0 17 232 c 0 0 0 0 0 0 79 571 2 13 269 3 51 584 4 25 g 0 0 0 0 0 0 10 0 528 28 41 108 2 0 547 20 t 0 0 0 0 0 0 326 13 22 323 141 224 487 0 16 307
ONAC127_UN0429.2_JASPAR_rc_shift9 (ONAC127:UN0429.2:JASPAR_rc)	0.867	0.552	0.476	0.898	0.927	2	4	9	10	2	5.400	5	; oligos_7nt_mkv5_m2 versus ONAC127_UN0429.2_JASPAR_rc (ONAC127:UN0429.2:JASPAR_rc); m=5/13; ncol2=7; w=0; offset=4; strand=R; shift=9; score= 5.4; ---------TCTTCCT ; cor=0.867; Ncor=0.552; logoDP=0.476; NsEucl=0.898; NSW=0.927; rcor=2; rNcor=4; rlogoDP=9; rNsEucl=10; rNSW=2; rank_mean=5.400; match_rank=5 a 0 0 0 0 0 0 0 0 0 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 0 0 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 0 0 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 0 0 51 1 53 50 1 0 49
Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc_shift1 (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc)	0.760	0.557	0.408	0.908	0.906	9	3	11	4	6	6.600	6	; oligos_7nt_mkv5_m2 versus Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc); m=6/13; ncol2=15; w=-4; offset=-4; strand=R; shift=1; score= 6.6; -ACskTTCrwCTTCyy ; cor=0.760; Ncor=0.557; logoDP=0.408; NsEucl=0.908; NSW=0.906; rcor=9; rNcor=3; rlogoDP=11; rNsEucl=4; rNSW=6; rank_mean=6.600; match_rank=6 a 0 74 0 1 3 0 1 11 51 29 10 0 2 0 0 16 c 0 7 98 28 22 1 12 82 0 8 79 3 8 95 65 43 g 0 4 0 49 28 0 0 4 48 14 1 0 0 0 1 14 t 0 15 2 22 47 99 87 3 1 49 10 97 90 5 34 27
AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot_shift1 (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot)	0.769	0.513	3.951	0.900	0.901	7	8	2	8	10	7.000	7	; oligos_7nt_mkv5_m2 versus AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot); m=7/13; ncol2=14; w=-4; offset=-4; strand=D; shift=1; score= 7; -ACskTTCrwCTTCy- ; cor=0.769; Ncor=0.513; logoDP=3.951; NsEucl=0.900; NSW=0.901; rcor=7; rNcor=8; rlogoDP=2; rNsEucl=8; rNSW=10; rank_mean=7.000; match_rank=7 a 0 78 0 0 7 0 1 13 54 28 7 0 0 1 0 0 c 0 4 98 26 24 1 15 81 0 8 85 1 12 96 63 0 g 0 4 0 52 27 0 0 4 46 14 1 0 0 0 1 0 t 0 14 2 22 42 99 84 2 0 50 7 99 88 3 36 0
ONAC127_UN0429.1_JASPAR_rc_shift7 (ONAC127:UN0429.1:JASPAR_rc)	0.775	0.536	0.530	0.895	0.902	6	5	7	11	9	7.600	8	; oligos_7nt_mkv5_m2 versus ONAC127_UN0429.1_JASPAR_rc (ONAC127:UN0429.1:JASPAR_rc); m=8/13; ncol2=11; w=0; offset=2; strand=R; shift=7; score= 7.6; -------brTCTTCCT ; cor=0.775; Ncor=0.536; logoDP=0.530; NsEucl=0.895; NSW=0.902; rcor=6; rNcor=5; rlogoDP=7; rNsEucl=11; rNSW=9; rank_mean=7.600; match_rank=8 a 0 0 0 0 0 0 0 5 17 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 21 11 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 15 15 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 14 12 51 1 53 50 1 0 49
Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot_shift0 (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot)	0.769	0.480	3.573	0.902	0.904	8	11	6	6	7	7.600	9	; oligos_7nt_mkv5_m2 versus Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot); m=9/13; ncol2=15; w=-5; offset=-5; strand=D; shift=0; score= 7.6; GACgbTTCrwCTTCy- ; cor=0.769; Ncor=0.480; logoDP=3.573; NsEucl=0.902; NSW=0.904; rcor=8; rNcor=11; rlogoDP=6; rNsEucl=6; rNSW=7; rank_mean=7.600; match_rank=9 a 20 74 0 0 16 0 0 16 52 30 12 0 4 2 2 0 c 0 2 99 20 26 1 22 74 0 8 81 2 2 93 66 0 g 80 8 0 66 29 0 0 8 48 8 1 0 4 2 1 0 t 0 16 1 14 29 99 78 2 0 54 6 98 90 3 31 0
bZIP44_2_EEAD0099_EEADannot_rc_shift3 (bZIP44_2:EEAD0099:EEADannot_rc)	0.708	0.519	0.472	0.906	0.902	11	6	10	5	8	8.000	10	; oligos_7nt_mkv5_m2 versus bZIP44_2_EEAD0099_EEADannot_rc (bZIP44_2:EEAD0099:EEADannot_rc); m=10/13; ncol2=15; w=-2; offset=-2; strand=R; shift=3; score= 8; ---TCATCaTCayCrt ; cor=0.708; Ncor=0.519; logoDP=0.472; NsEucl=0.906; NSW=0.902; rcor=11; rNcor=6; rlogoDP=10; rNsEucl=5; rNSW=8; rank_mean=8.000; match_rank=10 a 0 0 0 7 0 136 1 0 99 11 0 107 10 5 106 11 c 0 0 0 14 199 18 20 180 31 19 193 38 65 170 29 44 g 0 0 0 10 0 20 21 1 38 2 3 27 0 0 50 15 t 0 0 0 169 1 26 158 19 32 168 4 28 125 25 15 130
AT2G15740.DAP_M0317_AthalianaCistrome_rc_shift6 (AT2G15740.DAP:M0317:AthalianaCistrome_rc)	0.714	0.595	0.310	0.899	0.898	10	1	13	9	11	8.800	11	; oligos_7nt_mkv5_m2 versus AT2G15740.DAP_M0317_AthalianaCistrome_rc (AT2G15740.DAP:M0317:AthalianaCistrome_rc); m=11/13; ncol2=11; w=0; offset=1; strand=R; shift=6; score= 8.8; ------wCGtcryCGw ; cor=0.714; Ncor=0.595; logoDP=0.310; NsEucl=0.899; NSW=0.898; rcor=10; rNcor=1; rlogoDP=13; rNsEucl=9; rNSW=11; rank_mean=8.800; match_rank=11 a 0 0 0 0 0 0 171 13 57 112 118 313 65 0 1 241 c 0 0 0 0 0 0 91 525 6 112 339 0 168 593 0 40 g 0 0 0 0 0 0 16 22 479 50 21 169 1 0 599 24 t 0 0 0 0 0 0 322 40 58 326 122 118 366 7 0 295
BZIP105_Mo17_1_EEAD0239_EEADannot_shift7 (BZIP105_Mo17_1:EEAD0239:EEADannot)	0.701	0.510	4.139	0.868	0.860	13	9	1	12	13	9.600	12	; oligos_7nt_mkv5_m2 versus BZIP105_Mo17_1_EEAD0239_EEADannot (BZIP105_Mo17_1:EEAD0239:EEADannot); m=12/13; ncol2=8; w=0; offset=2; strand=D; shift=7; score= 9.6; -------yGtCGTCA- ; cor=0.701; Ncor=0.510; logoDP=4.139; NsEucl=0.868; NSW=0.860; rcor=13; rNcor=9; rlogoDP=1; rNsEucl=12; rNSW=13; rank_mean=9.600; match_rank=12 a 0 0 0 0 0 0 0 0 8 23 0 17 0 0 83 0 c 0 0 0 0 0 0 0 50 0 17 76 0 2 100 3 0 g 0 0 0 0 0 0 0 0 92 0 0 83 0 0 14 0 t 0 0 0 0 0 0 0 50 0 60 24 0 98 0 0 0
TGA1A_MA0129.1_JASPAR_shift5 (TGA1A:MA0129.1:JASPAR)	0.706	0.449	3.641	0.861	0.865	12	12	5	13	12	10.800	13	; oligos_7nt_mkv5_m2 versus TGA1A_MA0129.1_JASPAR (TGA1A:MA0129.1:JASPAR); m=13/13; ncol2=7; w=0; offset=0; strand=D; shift=5; score= 10.8; -----hACGTCA---- ; cor=0.706; Ncor=0.449; logoDP=3.641; NsEucl=0.861; NSW=0.865; rcor=12; rNcor=12; rlogoDP=5; rNsEucl=13; rNSW=12; rank_mean=10.800; match_rank=13 a 0 0 0 0 0 4 13 0 2 1 0 13 0 0 0 0 c 0 0 0 0 0 4 0 14 0 0 15 0 0 0 0 0 g 0 0 0 0 0 0 1 0 13 0 0 1 0 0 0 0 t 0 0 0 0 0 7 1 1 0 14 0 1 0 0 0 0