One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.121048_nyKodL/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/09/compare-matrices_2026-04-09.121048_nyKodL/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift7 ; 28 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------wtCATCTTCwt ; Alignment reference a 0 0 0 0 0 0 0 1844 1203 52 4683 259 236 711 191 179 1653 1300 c 0 0 0 0 0 0 0 1242 1201 5301 189 233 5246 208 337 5289 1104 1307 g 0 0 0 0 0 0 0 1128 1102 7 353 341 122 355 113 77 1086 931 t 0 0 0 0 0 0 0 1435 2143 289 424 4816 45 4375 5008 104 1806 2111

TGA5_2_EEAD0137_EEADannot_rc_shift5 (TGA5_2:EEAD0137:EEADannot_rc) 0.849 0.622 0.413 0.932 0.949 5 2 25 1 2 7.000 2
; oligos_7nt_mkv5_m5 versus TGA5_2_EEAD0137_EEADannot_rc (TGA5_2:EEAD0137:EEADannot_rc); m=2/28; ncol2=15; w=-2; offset=-2; strand=R; shift=5; score= 7; -----tCwTCwYCwtCwy ; cor=0.849; Ncor=0.622; logoDP=0.413; NsEucl=0.932; NSW=0.949; rcor=5; rNcor=2; rlogoDP=25; rNsEucl=1; rNSW=2; rank_mean=7.000; match_rank=2 a 0 0 0 0 0 8 0 68 0 0 84 5 0 82 23 0 76 12 c 0 0 0 0 0 40 163 13 47 204 19 53 204 15 38 201 26 70 g 0 0 0 0 0 38 0 30 9 0 29 0 0 47 6 0 18 12 t 0 0 0 0 0 118 41 93 148 0 72 146 0 60 137 3 84 110

bZIP44_2_EEAD0099_EEADannot_rc_shift5 (bZIP44_2:EEAD0099:EEADannot_rc) 0.791 0.580 0.535 0.920 0.929 10 3 19 3 5 8.000 3
; oligos_7nt_mkv5_m5 versus bZIP44_2_EEAD0099_EEADannot_rc (bZIP44_2:EEAD0099:EEADannot_rc); m=3/28; ncol2=14; w=-2; offset=-2; strand=R; shift=5; score= 8; -----TCATCaTCayCrt ; cor=0.791; Ncor=0.580; logoDP=0.535; NsEucl=0.920; NSW=0.929; rcor=10; rNcor=3; rlogoDP=19; rNsEucl=3; rNSW=5; rank_mean=8.000; match_rank=3 a 0 0 0 0 0 7 0 136 1 0 99 11 0 107 10 5 106 11 c 0 0 0 0 0 14 199 18 20 180 31 19 193 38 65 170 29 44 g 0 0 0 0 0 10 0 20 21 1 38 2 3 27 0 0 50 15 t 0 0 0 0 0 169 1 26 158 19 32 168 4 28 125 25 15 130

AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot_shift3 (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot) 0.781 0.521 4.231 0.903 0.905 12 12 8 10 8 10.000 4
; oligos_7nt_mkv5_m5 versus AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot); m=4/28; ncol2=15; w=-4; offset=-4; strand=D; shift=3; score= 10; ---ACskTTCrwCTTCy- ; cor=0.781; Ncor=0.521; logoDP=4.231; NsEucl=0.903; NSW=0.905; rcor=12; rNcor=12; rlogoDP=8; rNsEucl=10; rNSW=8; rank_mean=10.000; match_rank=4 a 0 0 0 78 0 0 7 0 1 13 54 28 7 0 0 1 0 0 c 0 0 0 4 98 26 24 1 15 81 0 8 85 1 12 96 63 0 g 0 0 0 4 0 52 27 0 0 4 46 14 1 0 0 0 1 0 t 0 0 0 14 2 22 42 99 84 2 0 50 7 99 88 3 36 0

Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc_shift3 (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc) 0.763 0.560 0.493 0.908 0.907 16 4 20 4 7 10.200 5
; oligos_7nt_mkv5_m5 versus Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc); m=5/28; ncol2=7; w=-4; offset=-4; strand=R; shift=3; score= 10.2; ---ACskTTC-------- ; cor=0.763; Ncor=0.560; logoDP=0.493; NsEucl=0.908; NSW=0.907; rcor=16; rNcor=4; rlogoDP=20; rNsEucl=4; rNSW=7; rank_mean=10.200; match_rank=5 a 0 0 0 74 0 1 3 0 1 11 0 0 0 0 0 0 0 0 c 0 0 0 7 98 28 22 1 12 82 0 0 0 0 0 0 0 0 g 0 0 0 4 0 49 28 0 0 4 0 0 0 0 0 0 0 0 t 0 0 0 15 2 22 47 99 87 3 0 0 0 0 0 0 0 0

ONAC127_UN0429.2_JASPAR_rc_shift11 (ONAC127:UN0429.2:JASPAR_rc) 0.869 0.553 0.433 0.899 0.928 2 5 24 14 6 10.200 6
; oligos_7nt_mkv5_m5 versus ONAC127_UN0429.2_JASPAR_rc (ONAC127:UN0429.2:JASPAR_rc); m=6/28; ncol2=5; w=0; offset=4; strand=R; shift=11; score= 10.2; -----------TCTTC-- ; cor=0.869; Ncor=0.553; logoDP=0.433; NsEucl=0.899; NSW=0.928; rcor=2; rNcor=5; rlogoDP=24; rNsEucl=14; rNSW=6; rank_mean=10.200; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 0 2 1 0 5 6 0 0 c 0 0 0 0 0 0 0 0 0 0 0 2 52 1 0 48 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 51 1 53 50 1 0 0

NAC_3swp_A_3D-footprint_rc_shift12 (NAC:3swp_A:3D-footprint_rc) 0.905 0.411 0.472 0.908 0.957 1 28 21 5 1 11.200 7
; oligos_7nt_mkv5_m5 versus NAC_3swp_A_3D-footprint_rc (NAC:3swp_A:3D-footprint_rc); m=7/28; ncol2=7; w=0; offset=5; strand=R; shift=12; score= 11.2; ------------CTTCG- ; cor=0.905; Ncor=0.411; logoDP=0.472; NsEucl=0.908; NSW=0.957; rcor=1; rNcor=28; rlogoDP=21; rNsEucl=5; rNSW=1; rank_mean=11.200; match_rank=7 a 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 9 0 c 0 0 0 0 0 0 0 0 0 0 0 0 96 11 11 96 11 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 67 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 67 67 0 9 0

TIFY2B_M0762_1.02_CISBP_rc_shift7 (TIFY2B:M0762_1.02:CISBP_rc) 0.818 0.520 0.130 0.905 0.936 6 13 28 7 3 11.400 8
; oligos_7nt_mkv5_m5 versus TIFY2B_M0762_1.02_CISBP_rc (TIFY2B:M0762_1.02:CISBP_rc); m=8/28; ncol2=12; w=0; offset=0; strand=R; shift=7; score= 11.4; -------hwsATCt---- ; cor=0.818; Ncor=0.520; logoDP=0.130; NsEucl=0.905; NSW=0.936; rcor=6; rNcor=13; rlogoDP=28; rNsEucl=7; rNSW=3; rank_mean=11.400; match_rank=8 a 0 0 0 0 0 0 0 26 28 24 100 3 4 21 0 0 0 0 c 0 0 0 0 0 0 0 26 23 27 0 0 96 11 0 0 0 0 g 0 0 0 0 0 0 0 17 20 40 0 0 0 23 0 0 0 0 t 0 0 0 0 0 0 0 31 29 9 0 97 0 45 0 0 0 0

XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot_shift4 (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot) 0.793 0.510 4.150 0.897 0.905 8 16 9 15 9 11.400 9
; oligos_7nt_mkv5_m5 versus XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot); m=9/28; ncol2=15; w=-3; offset=-3; strand=D; shift=4; score= 11.4; ----CgbTTCrwCTTC-- ; cor=0.793; Ncor=0.510; logoDP=4.150; NsEucl=0.897; NSW=0.905; rcor=8; rNcor=16; rlogoDP=9; rNsEucl=15; rNSW=9; rank_mean=11.400; match_rank=9 a 0 0 0 0 0 1 6 0 0 14 48 29 13 0 1 0 0 0 c 0 0 0 0 99 22 26 1 15 83 0 10 76 2 5 95 0 0 g 0 0 0 0 0 58 28 0 0 2 51 11 1 0 0 0 0 0 t 0 0 0 0 1 19 40 99 85 1 1 50 10 98 94 5 0 0

NAC28_B73_1_m1_EEAD0475_EEADannot_shift5 (NAC28_B73_1_m1:EEAD0475:EEADannot) 0.735 0.539 4.753 0.899 0.888 19 7 4 13 18 12.200 10
; oligos_7nt_mkv5_m5 versus NAC28_B73_1_m1_EEAD0475_EEADannot (NAC28_B73_1_m1:EEAD0475:EEADannot); m=10/28; ncol2=15; w=-2; offset=-2; strand=D; shift=5; score= 12.2; -----TCATCATCrTywy ; cor=0.735; Ncor=0.539; logoDP=4.753; NsEucl=0.899; NSW=0.888; rcor=19; rNcor=7; rlogoDP=4; rNsEucl=13; rNSW=18; rank_mean=12.200; match_rank=10 a 0 0 0 0 0 8 4 86 0 0 77 3 0 67 0 2 66 4 c 0 0 0 0 0 0 94 6 2 82 7 0 100 1 4 60 2 41 g 0 0 0 0 0 11 0 2 0 0 0 0 0 32 0 1 5 0 t 0 0 0 0 0 81 2 6 98 18 16 97 0 0 96 37 27 55

Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot_shift2 (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot) 0.772 0.483 3.758 0.903 0.905 13 18 12 11 10 12.800 11
; oligos_7nt_mkv5_m5 versus Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot); m=11/28; ncol2=19; w=-5; offset=-5; strand=D; shift=2; score= 12.8; --GACgbTTCrwCTTCy- ; cor=0.772; Ncor=0.483; logoDP=3.758; NsEucl=0.903; NSW=0.905; rcor=13; rNcor=18; rlogoDP=12; rNsEucl=11; rNSW=10; rank_mean=12.800; match_rank=11 a 0 0 20 74 0 0 16 0 0 16 52 30 12 0 4 2 2 0 c 0 0 0 2 99 20 26 1 22 74 0 8 81 2 2 93 66 0 g 0 0 80 8 0 66 29 0 0 8 48 8 1 0 4 2 1 0 t 0 0 0 16 1 14 29 99 78 2 0 54 6 98 90 3 31 0

ZML2.DAP_M0296_AthalianaCistrome_shift0 (ZML2.DAP:M0296:AthalianaCistrome) 0.771 0.446 4.725 0.902 0.895 15 24 5 12 16 14.400 12
; oligos_7nt_mkv5_m5 versus ZML2.DAP_M0296_AthalianaCistrome (ZML2.DAP:M0296:AthalianaCistrome); m=12/28; ncol2=15; w=-7; offset=-7; strand=D; shift=0; score= 14.4; CATCATCATCATCAT--- ; cor=0.771; Ncor=0.446; logoDP=4.725; NsEucl=0.902; NSW=0.895; rcor=15; rNcor=24; rlogoDP=5; rNsEucl=12; rNSW=16; rank_mean=14.400; match_rank=12 a 1 0.93 0 0 88 0 0 85 0.06 0 0.82 4 4 0.81 2 0 0 0 c 92 0.04 0.08 0.94 2 0.01 0.97 10 0.04 0.94 0 6 90 0 2 0 0 0 g 5 0.03 0 0.02 5 0.01 0 2 0 0 0.07 6 1 0.06 2 0 0 0 t 2 0 0.92 0.03 5 0.98 0.03 3 0.89 0.06 0.11 84 5 0.13 94 0 0 0

BHLH113_Mo17_1_EEAD0210_EEADannot_shift3 (BHLH113_Mo17_1:EEAD0210:EEADannot) 0.714 0.524 5.525 0.896 0.881 26 9 3 16 22 15.200 13
; oligos_7nt_mkv5_m5 versus BHLH113_Mo17_1_EEAD0210_EEADannot (BHLH113_Mo17_1:EEAD0210:EEADannot); m=13/28; ncol2=11; w=-4; offset=-4; strand=D; shift=3; score= 15.2; ---aaymtTCAyCA---- ; cor=0.714; Ncor=0.524; logoDP=5.525; NsEucl=0.896; NSW=0.881; rcor=26; rNcor=9; rlogoDP=3; rNsEucl=16; rNSW=22; rank_mean=15.200; match_rank=13 a 0 0 0 59 42 0 31 19 10 0 100 0 0 76 0 0 0 0 c 0 0 0 12 22 28 47 20 0 99 0 54 100 0 0 0 0 0 g 0 0 0 10 15 7 18 7 0 0 0 0 0 24 0 0 0 0 t 0 0 0 19 21 65 4 54 90 1 0 46 0 0 0 0 0 0

ONAC127_UN0429.1_JASPAR_rc_shift9 (ONAC127:UN0429.1:JASPAR_rc) 0.772 0.534 0.466 0.895 0.900 14 8 22 19 13 15.200 14
; oligos_7nt_mkv5_m5 versus ONAC127_UN0429.1_JASPAR_rc (ONAC127:UN0429.1:JASPAR_rc); m=14/28; ncol2=15; w=0; offset=2; strand=R; shift=9; score= 15.2; ---------brTCTTCCT ; cor=0.772; Ncor=0.534; logoDP=0.466; NsEucl=0.895; NSW=0.900; rcor=14; rNcor=8; rlogoDP=22; rNsEucl=19; rNSW=13; rank_mean=15.200; match_rank=14 a 0 0 0 0 0 0 0 0 0 5 17 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 0 0 21 11 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 0 0 15 15 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 0 0 14 12 51 1 53 50 1 0 49

ZML1.DAP_M0292_AthalianaCistrome_shift5 (ZML1.DAP:M0292:AthalianaCistrome) 0.736 0.540 6.046 0.882 0.846 18 6 1 24 28 15.400 15
; oligos_7nt_mkv5_m5 versus ZML1.DAP_M0292_AthalianaCistrome (ZML1.DAP:M0292:AthalianaCistrome); m=15/28; ncol2=6; w=-2; offset=-2; strand=D; shift=5; score= 15.4; -----TCATCA------- ; cor=0.736; Ncor=0.540; logoDP=6.046; NsEucl=0.882; NSW=0.846; rcor=18; rNcor=6; rlogoDP=1; rNsEucl=24; rNSW=28; rank_mean=15.400; match_rank=15 a 0 0 0 0 0 15 6 494 11 4 488 0 0 0 0 0 0 0 c 0 0 0 0 0 30 480 2 19 484 8 0 0 0 0 0 0 0 g 0 0 0 0 0 2 18 4 0 12 3 0 0 0 0 0 0 0 t 0 0 0 0 0 462 5 9 479 9 10 0 0 0 0 0 0 0

AT5G18090_UN0847.1_JASPAR_shift7 (AT5G18090:UN0847.1:JASPAR) 0.849 0.463 4.627 0.863 0.888 3 20 6 28 20 15.400 16
; oligos_7nt_mkv5_m5 versus AT5G18090_UN0847.1_JASPAR (AT5G18090:UN0847.1:JASPAR); m=16/28; ncol2=6; w=0; offset=0; strand=D; shift=7; score= 15.4; -------TTCATC----- ; cor=0.849; Ncor=0.463; logoDP=4.627; NsEucl=0.863; NSW=0.888; rcor=3; rNcor=20; rlogoDP=6; rNsEucl=28; rNSW=20; rank_mean=15.400; match_rank=16 a 0 0 0 0 0 0 0 0 0 0 1000 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 993 0 0 1000 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1000 1000 0 0 1000 0 0 0 0 0 0

REM21_UN0408.2_JASPAR_shift7 (REM21:UN0408.2:JASPAR) 0.849 0.463 4.621 0.863 0.888 4 21 7 27 19 15.600 17
; oligos_7nt_mkv5_m5 versus REM21_UN0408.2_JASPAR (REM21:UN0408.2:JASPAR); m=17/28; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 15.6; -------TTCATC----- ; cor=0.849; Ncor=0.463; logoDP=4.621; NsEucl=0.863; NSW=0.888; rcor=4; rNcor=21; rlogoDP=7; rNsEucl=27; rNSW=19; rank_mean=15.600; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 1000 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 993 0 0 1000 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1000 1000 0 0 1000 0 0 0 0 0 0

AGL42_MA1201.1_JASPAR_shift9 (AGL42:MA1201.1:JASPAR) 0.792 0.504 5.730 0.867 0.877 9 17 2 26 25 15.800 18
; oligos_7nt_mkv5_m5 versus AGL42_MA1201.1_JASPAR (AGL42:MA1201.1:JASPAR); m=18/28; ncol2=15; w=0; offset=2; strand=D; shift=9; score= 15.8; ---------CATCATy-- ; cor=0.792; Ncor=0.504; logoDP=5.730; NsEucl=0.867; NSW=0.877; rcor=9; rNcor=17; rlogoDP=2; rNsEucl=26; rNSW=25; rank_mean=15.800; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 146 0 0 146 0 17 0 0 c 0 0 0 0 0 0 0 0 0 146 0 12 146 0 0 73 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 t 0 0 0 0 0 0 0 0 0 0 0 134 0 0 146 40 0 0

GATA1.DAP_M0288_AthalianaCistrome_rc_shift3 (GATA1.DAP:M0288:AthalianaCistrome_rc) 0.711 0.522 0.450 0.906 0.902 27 11 23 6 12 15.800 19
; oligos_7nt_mkv5_m5 versus GATA1.DAP_M0288_AthalianaCistrome_rc (GATA1.DAP:M0288:AthalianaCistrome_rc); m=19/28; ncol2=19; w=-4; offset=-4; strand=R; shift=3; score= 15.8; ---CAyCAyCAyCAyCAy ; cor=0.711; Ncor=0.522; logoDP=0.450; NsEucl=0.906; NSW=0.902; rcor=27; rNcor=11; rlogoDP=23; rNsEucl=6; rNSW=12; rank_mean=15.800; match_rank=19 a 0 0 0 9 176 8 5 159 30 8 174 8 16 159 20 0 155 2 c 0 0 0 176 17 80 204 0 75 200 13 83 177 0 105 223 4 78 g 0 0 0 24 14 0 11 33 21 0 19 5 0 45 11 1 51 0 t 0 0 0 15 17 136 4 32 98 16 18 128 31 20 88 0 14 144

RKD2.DAP_M0728_AthalianaCistrome_shift0 (RKD2.DAP:M0728:AthalianaCistrome) 0.724 0.419 3.184 0.904 0.898 22 25 15 8 14 16.800 20
; oligos_7nt_mkv5_m5 versus RKD2.DAP_M0728_AthalianaCistrome (RKD2.DAP:M0728:AthalianaCistrome); m=20/28; ncol2=19; w=-7; offset=-7; strand=D; shift=0; score= 16.8; gyGaCkyTTCrtCTTCCy ; cor=0.724; Ncor=0.419; logoDP=3.184; NsEucl=0.904; NSW=0.898; rcor=22; rNcor=25; rlogoDP=15; rNsEucl=8; rNSW=14; rank_mean=16.800; match_rank=20 a 145 121 108 358 0 2 76 9 9 13 310 141 106 0 41 11 12 92 c 123 168 1 79 584 114 155 10 30 448 40 65 403 0 97 559 426 217 g 206 73 468 38 0 266 118 0 0 87 233 143 18 9 9 5 4 53 t 113 225 10 112 3 205 238 568 548 39 4 238 60 578 440 12 145 225

RKD2_UN0409.1_JASPAR_shift0 (RKD2:UN0409.1:JASPAR) 0.724 0.419 3.185 0.904 0.898 23 26 14 9 15 17.400 21
; oligos_7nt_mkv5_m5 versus RKD2_UN0409.1_JASPAR (RKD2:UN0409.1:JASPAR); m=21/28; ncol2=14; w=-7; offset=-7; strand=D; shift=0; score= 17.4; gyGaCkyTTCrtCT---- ; cor=0.724; Ncor=0.419; logoDP=3.185; NsEucl=0.904; NSW=0.898; rcor=23; rNcor=26; rlogoDP=14; rNsEucl=9; rNSW=15; rank_mean=17.400; match_rank=21 a 247 206 184 610 0 3.407 129 15.332 15.332 22.147 528 240 181 0 0 0 0 0 c 209.54 286 1.704 135 995 194 264 17.036 51.107 763 68.143 111 687 0 0 0 0 0 g 351 124 797 64.736 0 453 201 0 0 148 397 244 30.664 15.332 0 0 0 0 t 193 383 17.036 191 5.111 349 405 968 933.56 66.44 6.814 405 102 985 0 0 0 0

NAC28_Mo17_1_EEAD0476_EEADannot_rc_shift8 (NAC28_Mo17_1:EEAD0476:EEADannot_rc) 0.784 0.522 0.402 0.890 0.878 11 10 26 21 24 18.400 22
; oligos_7nt_mkv5_m5 versus NAC28_Mo17_1_EEAD0476_EEADannot_rc (NAC28_Mo17_1:EEAD0476:EEADannot_rc); m=22/28; ncol2=15; w=0; offset=1; strand=R; shift=8; score= 18.4; --------TCATCATCrT ; cor=0.784; Ncor=0.522; logoDP=0.402; NsEucl=0.890; NSW=0.878; rcor=11; rNcor=10; rlogoDP=26; rNsEucl=21; rNSW=24; rank_mean=18.400; match_rank=22 a 0 0 0 0 0 0 0 0 0 0 93 0 0 90 1 0 41 0 c 0 0 0 0 0 0 0 0 0 98 4 0 97 6 1 96 0 6 g 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 57 1 t 0 0 0 0 0 0 0 0 99 2 2 100 3 2 98 4 2 93

RKD2_UN0409.2_JASPAR_shift2 (RKD2:UN0409.2:JASPAR) 0.724 0.453 3.183 0.895 0.889 21 22 16 18 17 18.800 23
; oligos_7nt_mkv5_m5 versus RKD2_UN0409.2_JASPAR (RKD2:UN0409.2:JASPAR); m=23/28; ncol2=7; w=-5; offset=-5; strand=D; shift=2; score= 18.8; --GaCkyTT--------- ; cor=0.724; Ncor=0.453; logoDP=3.183; NsEucl=0.895; NSW=0.889; rcor=21; rNcor=22; rlogoDP=16; rNsEucl=18; rNSW=17; rank_mean=18.800; match_rank=23 a 0 0 184 610 0 3 129 15 15 0 0 0 0 0 0 0 0 0 c 0 0 2 135 995 194 264 17 51 0 0 0 0 0 0 0 0 0 g 0 0 797 65 0 453 201 0 0 0 0 0 0 0 0 0 0 0 t 0 0 17 191 5 349 405 968 934 0 0 0 0 0 0 0 0 0

TIFY2A_M0760_1.02_CISBP_rc_shift8 (TIFY2A:M0760_1.02:CISBP_rc) 0.753 0.479 0.210 0.883 0.904 17 19 27 23 11 19.400 24
; oligos_7nt_mkv5_m5 versus TIFY2A_M0760_1.02_CISBP_rc (TIFY2A:M0760_1.02:CISBP_rc); m=24/28; ncol2=13; w=0; offset=1; strand=R; shift=8; score= 19.4; --------hsATCtd--- ; cor=0.753; Ncor=0.479; logoDP=0.210; NsEucl=0.883; NSW=0.904; rcor=17; rNcor=19; rlogoDP=27; rNsEucl=23; rNSW=11; rank_mean=19.400; match_rank=24 a 0 0 0 0 0 0 0 0 28 24 99 7 5 23 26 0 0 0 c 0 0 0 0 0 0 0 0 26 31 0 1 86 13 23 0 0 0 g 0 0 0 0 0 0 0 0 20 32 0 0 1 24 25 0 0 0 t 0 0 0 0 0 0 0 0 26 13 1 92 8 40 26 0 0 0

ARR5_Mo17_1_EEAD0206_EEADannot_rc_shift4 (ARR5_Mo17_1:EEAD0206:EEADannot_rc) 0.727 0.519 2.302 0.883 0.864 20 14 17 22 27 20.000 25
; oligos_7nt_mkv5_m5 versus ARR5_Mo17_1_EEAD0206_EEADannot_rc (ARR5_Mo17_1:EEAD0206:EEADannot_rc); m=25/28; ncol2=8; w=-3; offset=-3; strand=R; shift=4; score= 20; ----AGATyCAT------ ; cor=0.727; Ncor=0.519; logoDP=2.302; NsEucl=0.883; NSW=0.864; rcor=20; rNcor=14; rlogoDP=17; rNsEucl=22; rNSW=27; rank_mean=20.000; match_rank=25 a 0 0 0 0 81 6 99 1 1 1 97 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 9 34 94 0 2 0 0 0 0 0 0 g 0 0 0 0 18 91 1 0 1 0 3 0 0 0 0 0 0 0 t 0 0 0 0 1 3 0 90 64 5 0 97 0 0 0 0 0 0

ARR2_MA0949.2_JASPAR_shift7 (ARR2:MA0949.2:JASPAR) 0.703 0.511 4.133 0.870 0.866 28 15 10 25 26 20.800 26
; oligos_7nt_mkv5_m5 versus ARR2_MA0949.2_JASPAR (ARR2:MA0949.2:JASPAR); m=26/28; ncol2=19; w=0; offset=0; strand=D; shift=7; score= 20.8; -------mGwATCTT--- ; cor=0.703; Ncor=0.511; logoDP=4.133; NsEucl=0.870; NSW=0.866; rcor=28; rNcor=15; rlogoDP=10; rNsEucl=25; rNSW=26; rank_mean=20.800; match_rank=26 a 0 0 0 0 0 0 0 338 214 476 1000 0 0 0 162 0 0 0 c 0 0 0 0 0 0 0 572 0 0 0 0 1000 0 76 0 0 0 g 0 0 0 0 0 0 0 45 786 214 0 0 0 0 76 0 0 0 t 0 0 0 0 0 0 0 45 0 309 0 1000 0 1000 687 0 0 0

GATA15.DAP_M0283_AthalianaCistrome_shift0 (GATA15.DAP:M0283:AthalianaCistrome) 0.716 0.415 3.393 0.896 0.880 25 27 13 17 23 21.000 27
; oligos_7nt_mkv5_m5 versus GATA15.DAP_M0283_AthalianaCistrome (GATA15.DAP:M0283:AthalianaCistrome); m=27/28; ncol2=15; w=-7; offset=-7; strand=D; shift=0; score= 21; SATCATCATCATCAT--- ; cor=0.716; Ncor=0.415; logoDP=3.393; NsEucl=0.896; NSW=0.880; rcor=25; rNcor=27; rlogoDP=13; rNsEucl=17; rNSW=23; rank_mean=21.000; match_rank=27 a 3 323 4 7 331 1 7 312 18 21 308 12 15 287 10 0 0 0 c 238 0 16 255 0 12 302 7 25 243 2 17 298 4 26 0 0 0 g 86 5 0 72 7 0 15 4 6 61 13 7 11 17 13 0 0 0 t 15 14 322 8 4 329 18 19 293 17 19 306 18 34 293 0 0 0

RKD2.ampDAP_M0727_AthalianaCistrome_rc_shift2 (RKD2.ampDAP:M0727:AthalianaCistrome_rc) 0.722 0.451 0.910 0.894 0.887 24 23 18 20 21 21.200 28
; oligos_7nt_mkv5_m5 versus RKD2.ampDAP_M0727_AthalianaCistrome_rc (RKD2.ampDAP:M0727:AthalianaCistrome_rc); m=28/28; ncol2=; w=-5; offset=-5; strand=R; shift=2; score= 21.2; ------------------ ; cor=0.722; Ncor=0.451; logoDP=0.910; NsEucl=0.894; NSW=0.887; rcor=24; rNcor=23; rlogoDP=18; rNsEucl=20; rNSW=21; rank_mean=21.200; match_rank=28 a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)													; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=11; shift=7; ncol=18; -------wtCATCTTCwt ; Alignment reference a 0 0 0 0 0 0 0 1844 1203 52 4683 259 236 711 191 179 1653 1300 c 0 0 0 0 0 0 0 1242 1201 5301 189 233 5246 208 337 5289 1104 1307 g 0 0 0 0 0 0 0 1128 1102 7 353 341 122 355 113 77 1086 931 t 0 0 0 0 0 0 0 1435 2143 289 424 4816 45 4375 5008 104 1806 2111
TGA5_2_EEAD0137_EEADannot_rc_shift5 (TGA5_2:EEAD0137:EEADannot_rc)	0.849	0.622	0.413	0.932	0.949	5	2	25	1	2	7.000	2	; oligos_7nt_mkv5_m5 versus TGA5_2_EEAD0137_EEADannot_rc (TGA5_2:EEAD0137:EEADannot_rc); m=2/28; ncol2=15; w=-2; offset=-2; strand=R; shift=5; score= 7; -----tCwTCwYCwtCwy ; cor=0.849; Ncor=0.622; logoDP=0.413; NsEucl=0.932; NSW=0.949; rcor=5; rNcor=2; rlogoDP=25; rNsEucl=1; rNSW=2; rank_mean=7.000; match_rank=2 a 0 0 0 0 0 8 0 68 0 0 84 5 0 82 23 0 76 12 c 0 0 0 0 0 40 163 13 47 204 19 53 204 15 38 201 26 70 g 0 0 0 0 0 38 0 30 9 0 29 0 0 47 6 0 18 12 t 0 0 0 0 0 118 41 93 148 0 72 146 0 60 137 3 84 110
bZIP44_2_EEAD0099_EEADannot_rc_shift5 (bZIP44_2:EEAD0099:EEADannot_rc)	0.791	0.580	0.535	0.920	0.929	10	3	19	3	5	8.000	3	; oligos_7nt_mkv5_m5 versus bZIP44_2_EEAD0099_EEADannot_rc (bZIP44_2:EEAD0099:EEADannot_rc); m=3/28; ncol2=14; w=-2; offset=-2; strand=R; shift=5; score= 8; -----TCATCaTCayCrt ; cor=0.791; Ncor=0.580; logoDP=0.535; NsEucl=0.920; NSW=0.929; rcor=10; rNcor=3; rlogoDP=19; rNsEucl=3; rNSW=5; rank_mean=8.000; match_rank=3 a 0 0 0 0 0 7 0 136 1 0 99 11 0 107 10 5 106 11 c 0 0 0 0 0 14 199 18 20 180 31 19 193 38 65 170 29 44 g 0 0 0 0 0 10 0 20 21 1 38 2 3 27 0 0 50 15 t 0 0 0 0 0 169 1 26 158 19 32 168 4 28 125 25 15 130
AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot_shift3 (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot)	0.781	0.521	4.231	0.903	0.905	12	12	8	10	8	10.000	4	; oligos_7nt_mkv5_m5 versus AL2G34360.t1_RWPRK_1_AT1G74480_EEAD0584_EEADannot (AL2G34360.t1_RWPRK_1_AT1G74480:EEAD0584:EEADannot); m=4/28; ncol2=15; w=-4; offset=-4; strand=D; shift=3; score= 10; ---ACskTTCrwCTTCy- ; cor=0.781; Ncor=0.521; logoDP=4.231; NsEucl=0.903; NSW=0.905; rcor=12; rNcor=12; rlogoDP=8; rNsEucl=10; rNSW=8; rank_mean=10.000; match_rank=4 a 0 0 0 78 0 0 7 0 1 13 54 28 7 0 0 1 0 0 c 0 0 0 4 98 26 24 1 15 81 0 8 85 1 12 96 63 0 g 0 0 0 4 0 52 27 0 0 4 46 14 1 0 0 0 1 0 t 0 0 0 14 2 22 42 99 84 2 0 50 7 99 88 3 36 0
Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc_shift3 (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc)	0.763	0.560	0.493	0.908	0.907	16	4	20	4	7	10.200	5	; oligos_7nt_mkv5_m5 versus Carub.0002s2128.1_RWPRK_1_AT1G74480_EEAD0605_EEADannot_rc (Carub.0002s2128.1_RWPRK_1_AT1G74480:EEAD0605:EEADannot_rc); m=5/28; ncol2=7; w=-4; offset=-4; strand=R; shift=3; score= 10.2; ---ACskTTC-------- ; cor=0.763; Ncor=0.560; logoDP=0.493; NsEucl=0.908; NSW=0.907; rcor=16; rNcor=4; rlogoDP=20; rNsEucl=4; rNSW=7; rank_mean=10.200; match_rank=5 a 0 0 0 74 0 1 3 0 1 11 0 0 0 0 0 0 0 0 c 0 0 0 7 98 28 22 1 12 82 0 0 0 0 0 0 0 0 g 0 0 0 4 0 49 28 0 0 4 0 0 0 0 0 0 0 0 t 0 0 0 15 2 22 47 99 87 3 0 0 0 0 0 0 0 0
ONAC127_UN0429.2_JASPAR_rc_shift11 (ONAC127:UN0429.2:JASPAR_rc)	0.869	0.553	0.433	0.899	0.928	2	5	24	14	6	10.200	6	; oligos_7nt_mkv5_m5 versus ONAC127_UN0429.2_JASPAR_rc (ONAC127:UN0429.2:JASPAR_rc); m=6/28; ncol2=5; w=0; offset=4; strand=R; shift=11; score= 10.2; -----------TCTTC-- ; cor=0.869; Ncor=0.553; logoDP=0.433; NsEucl=0.899; NSW=0.928; rcor=2; rNcor=5; rlogoDP=24; rNsEucl=14; rNSW=6; rank_mean=10.200; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 0 2 1 0 5 6 0 0 c 0 0 0 0 0 0 0 0 0 0 0 2 52 1 0 48 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 51 1 53 50 1 0 0
NAC_3swp_A_3D-footprint_rc_shift12 (NAC:3swp_A:3D-footprint_rc)	0.905	0.411	0.472	0.908	0.957	1	28	21	5	1	11.200	7	; oligos_7nt_mkv5_m5 versus NAC_3swp_A_3D-footprint_rc (NAC:3swp_A:3D-footprint_rc); m=7/28; ncol2=7; w=0; offset=5; strand=R; shift=12; score= 11.2; ------------CTTCG- ; cor=0.905; Ncor=0.411; logoDP=0.472; NsEucl=0.908; NSW=0.957; rcor=1; rNcor=28; rlogoDP=21; rNsEucl=5; rNSW=1; rank_mean=11.200; match_rank=7 a 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 9 0 c 0 0 0 0 0 0 0 0 0 0 0 0 96 11 11 96 11 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 67 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 67 67 0 9 0
TIFY2B_M0762_1.02_CISBP_rc_shift7 (TIFY2B:M0762_1.02:CISBP_rc)	0.818	0.520	0.130	0.905	0.936	6	13	28	7	3	11.400	8	; oligos_7nt_mkv5_m5 versus TIFY2B_M0762_1.02_CISBP_rc (TIFY2B:M0762_1.02:CISBP_rc); m=8/28; ncol2=12; w=0; offset=0; strand=R; shift=7; score= 11.4; -------hwsATCt---- ; cor=0.818; Ncor=0.520; logoDP=0.130; NsEucl=0.905; NSW=0.936; rcor=6; rNcor=13; rlogoDP=28; rNsEucl=7; rNSW=3; rank_mean=11.400; match_rank=8 a 0 0 0 0 0 0 0 26 28 24 100 3 4 21 0 0 0 0 c 0 0 0 0 0 0 0 26 23 27 0 0 96 11 0 0 0 0 g 0 0 0 0 0 0 0 17 20 40 0 0 0 23 0 0 0 0 t 0 0 0 0 0 0 0 31 29 9 0 97 0 45 0 0 0 0
XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot_shift4 (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot)	0.793	0.510	4.150	0.897	0.905	8	16	9	15	9	11.400	9	; oligos_7nt_mkv5_m5 versus XP_013591813.1_RWPRK_1_AT1G74480_EEAD0667_EEADannot (XP_013591813.1_RWPRK_1_AT1G74480:EEAD0667:EEADannot); m=9/28; ncol2=15; w=-3; offset=-3; strand=D; shift=4; score= 11.4; ----CgbTTCrwCTTC-- ; cor=0.793; Ncor=0.510; logoDP=4.150; NsEucl=0.897; NSW=0.905; rcor=8; rNcor=16; rlogoDP=9; rNsEucl=15; rNSW=9; rank_mean=11.400; match_rank=9 a 0 0 0 0 0 1 6 0 0 14 48 29 13 0 1 0 0 0 c 0 0 0 0 99 22 26 1 15 83 0 10 76 2 5 95 0 0 g 0 0 0 0 0 58 28 0 0 2 51 11 1 0 0 0 0 0 t 0 0 0 0 1 19 40 99 85 1 1 50 10 98 94 5 0 0
NAC28_B73_1_m1_EEAD0475_EEADannot_shift5 (NAC28_B73_1_m1:EEAD0475:EEADannot)	0.735	0.539	4.753	0.899	0.888	19	7	4	13	18	12.200	10	; oligos_7nt_mkv5_m5 versus NAC28_B73_1_m1_EEAD0475_EEADannot (NAC28_B73_1_m1:EEAD0475:EEADannot); m=10/28; ncol2=15; w=-2; offset=-2; strand=D; shift=5; score= 12.2; -----TCATCATCrTywy ; cor=0.735; Ncor=0.539; logoDP=4.753; NsEucl=0.899; NSW=0.888; rcor=19; rNcor=7; rlogoDP=4; rNsEucl=13; rNSW=18; rank_mean=12.200; match_rank=10 a 0 0 0 0 0 8 4 86 0 0 77 3 0 67 0 2 66 4 c 0 0 0 0 0 0 94 6 2 82 7 0 100 1 4 60 2 41 g 0 0 0 0 0 11 0 2 0 0 0 0 0 32 0 1 5 0 t 0 0 0 0 0 81 2 6 98 18 16 97 0 0 96 37 27 55
Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot_shift2 (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot)	0.772	0.483	3.758	0.903	0.905	13	18	12	11	10	12.800	11	; oligos_7nt_mkv5_m5 versus Solyc03g116010.3.1_RWPRK_1_AT1G74480_EEAD0647_EEADannot (Solyc03g116010.3.1_RWPRK_1_AT1G74480:EEAD0647:EEADannot); m=11/28; ncol2=19; w=-5; offset=-5; strand=D; shift=2; score= 12.8; --GACgbTTCrwCTTCy- ; cor=0.772; Ncor=0.483; logoDP=3.758; NsEucl=0.903; NSW=0.905; rcor=13; rNcor=18; rlogoDP=12; rNsEucl=11; rNSW=10; rank_mean=12.800; match_rank=11 a 0 0 20 74 0 0 16 0 0 16 52 30 12 0 4 2 2 0 c 0 0 0 2 99 20 26 1 22 74 0 8 81 2 2 93 66 0 g 0 0 80 8 0 66 29 0 0 8 48 8 1 0 4 2 1 0 t 0 0 0 16 1 14 29 99 78 2 0 54 6 98 90 3 31 0
ZML2.DAP_M0296_AthalianaCistrome_shift0 (ZML2.DAP:M0296:AthalianaCistrome)	0.771	0.446	4.725	0.902	0.895	15	24	5	12	16	14.400	12	; oligos_7nt_mkv5_m5 versus ZML2.DAP_M0296_AthalianaCistrome (ZML2.DAP:M0296:AthalianaCistrome); m=12/28; ncol2=15; w=-7; offset=-7; strand=D; shift=0; score= 14.4; CATCATCATCATCAT--- ; cor=0.771; Ncor=0.446; logoDP=4.725; NsEucl=0.902; NSW=0.895; rcor=15; rNcor=24; rlogoDP=5; rNsEucl=12; rNSW=16; rank_mean=14.400; match_rank=12 a 1 0.93 0 0 88 0 0 85 0.06 0 0.82 4 4 0.81 2 0 0 0 c 92 0.04 0.08 0.94 2 0.01 0.97 10 0.04 0.94 0 6 90 0 2 0 0 0 g 5 0.03 0 0.02 5 0.01 0 2 0 0 0.07 6 1 0.06 2 0 0 0 t 2 0 0.92 0.03 5 0.98 0.03 3 0.89 0.06 0.11 84 5 0.13 94 0 0 0
BHLH113_Mo17_1_EEAD0210_EEADannot_shift3 (BHLH113_Mo17_1:EEAD0210:EEADannot)	0.714	0.524	5.525	0.896	0.881	26	9	3	16	22	15.200	13	; oligos_7nt_mkv5_m5 versus BHLH113_Mo17_1_EEAD0210_EEADannot (BHLH113_Mo17_1:EEAD0210:EEADannot); m=13/28; ncol2=11; w=-4; offset=-4; strand=D; shift=3; score= 15.2; ---aaymtTCAyCA---- ; cor=0.714; Ncor=0.524; logoDP=5.525; NsEucl=0.896; NSW=0.881; rcor=26; rNcor=9; rlogoDP=3; rNsEucl=16; rNSW=22; rank_mean=15.200; match_rank=13 a 0 0 0 59 42 0 31 19 10 0 100 0 0 76 0 0 0 0 c 0 0 0 12 22 28 47 20 0 99 0 54 100 0 0 0 0 0 g 0 0 0 10 15 7 18 7 0 0 0 0 0 24 0 0 0 0 t 0 0 0 19 21 65 4 54 90 1 0 46 0 0 0 0 0 0
ONAC127_UN0429.1_JASPAR_rc_shift9 (ONAC127:UN0429.1:JASPAR_rc)	0.772	0.534	0.466	0.895	0.900	14	8	22	19	13	15.200	14	; oligos_7nt_mkv5_m5 versus ONAC127_UN0429.1_JASPAR_rc (ONAC127:UN0429.1:JASPAR_rc); m=14/28; ncol2=15; w=0; offset=2; strand=R; shift=9; score= 15.2; ---------brTCTTCCT ; cor=0.772; Ncor=0.534; logoDP=0.466; NsEucl=0.895; NSW=0.900; rcor=14; rNcor=8; rlogoDP=22; rNsEucl=19; rNSW=13; rank_mean=15.200; match_rank=14 a 0 0 0 0 0 0 0 0 0 5 17 2 1 0 5 6 6 5 c 0 0 0 0 0 0 0 0 0 21 11 2 52 1 0 48 46 1 g 0 0 0 0 0 0 0 0 0 15 15 0 1 1 0 0 3 0 t 0 0 0 0 0 0 0 0 0 14 12 51 1 53 50 1 0 49
ZML1.DAP_M0292_AthalianaCistrome_shift5 (ZML1.DAP:M0292:AthalianaCistrome)	0.736	0.540	6.046	0.882	0.846	18	6	1	24	28	15.400	15	; oligos_7nt_mkv5_m5 versus ZML1.DAP_M0292_AthalianaCistrome (ZML1.DAP:M0292:AthalianaCistrome); m=15/28; ncol2=6; w=-2; offset=-2; strand=D; shift=5; score= 15.4; -----TCATCA------- ; cor=0.736; Ncor=0.540; logoDP=6.046; NsEucl=0.882; NSW=0.846; rcor=18; rNcor=6; rlogoDP=1; rNsEucl=24; rNSW=28; rank_mean=15.400; match_rank=15 a 0 0 0 0 0 15 6 494 11 4 488 0 0 0 0 0 0 0 c 0 0 0 0 0 30 480 2 19 484 8 0 0 0 0 0 0 0 g 0 0 0 0 0 2 18 4 0 12 3 0 0 0 0 0 0 0 t 0 0 0 0 0 462 5 9 479 9 10 0 0 0 0 0 0 0
AT5G18090_UN0847.1_JASPAR_shift7 (AT5G18090:UN0847.1:JASPAR)	0.849	0.463	4.627	0.863	0.888	3	20	6	28	20	15.400	16	; oligos_7nt_mkv5_m5 versus AT5G18090_UN0847.1_JASPAR (AT5G18090:UN0847.1:JASPAR); m=16/28; ncol2=6; w=0; offset=0; strand=D; shift=7; score= 15.4; -------TTCATC----- ; cor=0.849; Ncor=0.463; logoDP=4.627; NsEucl=0.863; NSW=0.888; rcor=3; rNcor=20; rlogoDP=6; rNsEucl=28; rNSW=20; rank_mean=15.400; match_rank=16 a 0 0 0 0 0 0 0 0 0 0 1000 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 993 0 0 1000 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1000 1000 0 0 1000 0 0 0 0 0 0
REM21_UN0408.2_JASPAR_shift7 (REM21:UN0408.2:JASPAR)	0.849	0.463	4.621	0.863	0.888	4	21	7	27	19	15.600	17	; oligos_7nt_mkv5_m5 versus REM21_UN0408.2_JASPAR (REM21:UN0408.2:JASPAR); m=17/28; ncol2=7; w=0; offset=0; strand=D; shift=7; score= 15.6; -------TTCATC----- ; cor=0.849; Ncor=0.463; logoDP=4.621; NsEucl=0.863; NSW=0.888; rcor=4; rNcor=21; rlogoDP=7; rNsEucl=27; rNSW=19; rank_mean=15.600; match_rank=17 a 0 0 0 0 0 0 0 0 0 0 1000 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 993 0 0 1000 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1000 1000 0 0 1000 0 0 0 0 0 0
AGL42_MA1201.1_JASPAR_shift9 (AGL42:MA1201.1:JASPAR)	0.792	0.504	5.730	0.867	0.877	9	17	2	26	25	15.800	18	; oligos_7nt_mkv5_m5 versus AGL42_MA1201.1_JASPAR (AGL42:MA1201.1:JASPAR); m=18/28; ncol2=15; w=0; offset=2; strand=D; shift=9; score= 15.8; ---------CATCATy-- ; cor=0.792; Ncor=0.504; logoDP=5.730; NsEucl=0.867; NSW=0.877; rcor=9; rNcor=17; rlogoDP=2; rNsEucl=26; rNSW=25; rank_mean=15.800; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 146 0 0 146 0 17 0 0 c 0 0 0 0 0 0 0 0 0 146 0 12 146 0 0 73 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 t 0 0 0 0 0 0 0 0 0 0 0 134 0 0 146 40 0 0
GATA1.DAP_M0288_AthalianaCistrome_rc_shift3 (GATA1.DAP:M0288:AthalianaCistrome_rc)	0.711	0.522	0.450	0.906	0.902	27	11	23	6	12	15.800	19	; oligos_7nt_mkv5_m5 versus GATA1.DAP_M0288_AthalianaCistrome_rc (GATA1.DAP:M0288:AthalianaCistrome_rc); m=19/28; ncol2=19; w=-4; offset=-4; strand=R; shift=3; score= 15.8; ---CAyCAyCAyCAyCAy ; cor=0.711; Ncor=0.522; logoDP=0.450; NsEucl=0.906; NSW=0.902; rcor=27; rNcor=11; rlogoDP=23; rNsEucl=6; rNSW=12; rank_mean=15.800; match_rank=19 a 0 0 0 9 176 8 5 159 30 8 174 8 16 159 20 0 155 2 c 0 0 0 176 17 80 204 0 75 200 13 83 177 0 105 223 4 78 g 0 0 0 24 14 0 11 33 21 0 19 5 0 45 11 1 51 0 t 0 0 0 15 17 136 4 32 98 16 18 128 31 20 88 0 14 144
RKD2.DAP_M0728_AthalianaCistrome_shift0 (RKD2.DAP:M0728:AthalianaCistrome)	0.724	0.419	3.184	0.904	0.898	22	25	15	8	14	16.800	20	; oligos_7nt_mkv5_m5 versus RKD2.DAP_M0728_AthalianaCistrome (RKD2.DAP:M0728:AthalianaCistrome); m=20/28; ncol2=19; w=-7; offset=-7; strand=D; shift=0; score= 16.8; gyGaCkyTTCrtCTTCCy ; cor=0.724; Ncor=0.419; logoDP=3.184; NsEucl=0.904; NSW=0.898; rcor=22; rNcor=25; rlogoDP=15; rNsEucl=8; rNSW=14; rank_mean=16.800; match_rank=20 a 145 121 108 358 0 2 76 9 9 13 310 141 106 0 41 11 12 92 c 123 168 1 79 584 114 155 10 30 448 40 65 403 0 97 559 426 217 g 206 73 468 38 0 266 118 0 0 87 233 143 18 9 9 5 4 53 t 113 225 10 112 3 205 238 568 548 39 4 238 60 578 440 12 145 225
RKD2_UN0409.1_JASPAR_shift0 (RKD2:UN0409.1:JASPAR)	0.724	0.419	3.185	0.904	0.898	23	26	14	9	15	17.400	21	; oligos_7nt_mkv5_m5 versus RKD2_UN0409.1_JASPAR (RKD2:UN0409.1:JASPAR); m=21/28; ncol2=14; w=-7; offset=-7; strand=D; shift=0; score= 17.4; gyGaCkyTTCrtCT---- ; cor=0.724; Ncor=0.419; logoDP=3.185; NsEucl=0.904; NSW=0.898; rcor=23; rNcor=26; rlogoDP=14; rNsEucl=9; rNSW=15; rank_mean=17.400; match_rank=21 a 247 206 184 610 0 3.407 129 15.332 15.332 22.147 528 240 181 0 0 0 0 0 c 209.54 286 1.704 135 995 194 264 17.036 51.107 763 68.143 111 687 0 0 0 0 0 g 351 124 797 64.736 0 453 201 0 0 148 397 244 30.664 15.332 0 0 0 0 t 193 383 17.036 191 5.111 349 405 968 933.56 66.44 6.814 405 102 985 0 0 0 0
NAC28_Mo17_1_EEAD0476_EEADannot_rc_shift8 (NAC28_Mo17_1:EEAD0476:EEADannot_rc)	0.784	0.522	0.402	0.890	0.878	11	10	26	21	24	18.400	22	; oligos_7nt_mkv5_m5 versus NAC28_Mo17_1_EEAD0476_EEADannot_rc (NAC28_Mo17_1:EEAD0476:EEADannot_rc); m=22/28; ncol2=15; w=0; offset=1; strand=R; shift=8; score= 18.4; --------TCATCATCrT ; cor=0.784; Ncor=0.522; logoDP=0.402; NsEucl=0.890; NSW=0.878; rcor=11; rNcor=10; rlogoDP=26; rNsEucl=21; rNSW=24; rank_mean=18.400; match_rank=22 a 0 0 0 0 0 0 0 0 0 0 93 0 0 90 1 0 41 0 c 0 0 0 0 0 0 0 0 0 98 4 0 97 6 1 96 0 6 g 0 0 0 0 0 0 0 0 1 0 1 0 0 2 0 0 57 1 t 0 0 0 0 0 0 0 0 99 2 2 100 3 2 98 4 2 93
RKD2_UN0409.2_JASPAR_shift2 (RKD2:UN0409.2:JASPAR)	0.724	0.453	3.183	0.895	0.889	21	22	16	18	17	18.800	23	; oligos_7nt_mkv5_m5 versus RKD2_UN0409.2_JASPAR (RKD2:UN0409.2:JASPAR); m=23/28; ncol2=7; w=-5; offset=-5; strand=D; shift=2; score= 18.8; --GaCkyTT--------- ; cor=0.724; Ncor=0.453; logoDP=3.183; NsEucl=0.895; NSW=0.889; rcor=21; rNcor=22; rlogoDP=16; rNsEucl=18; rNSW=17; rank_mean=18.800; match_rank=23 a 0 0 184 610 0 3 129 15 15 0 0 0 0 0 0 0 0 0 c 0 0 2 135 995 194 264 17 51 0 0 0 0 0 0 0 0 0 g 0 0 797 65 0 453 201 0 0 0 0 0 0 0 0 0 0 0 t 0 0 17 191 5 349 405 968 934 0 0 0 0 0 0 0 0 0
TIFY2A_M0760_1.02_CISBP_rc_shift8 (TIFY2A:M0760_1.02:CISBP_rc)	0.753	0.479	0.210	0.883	0.904	17	19	27	23	11	19.400	24	; oligos_7nt_mkv5_m5 versus TIFY2A_M0760_1.02_CISBP_rc (TIFY2A:M0760_1.02:CISBP_rc); m=24/28; ncol2=13; w=0; offset=1; strand=R; shift=8; score= 19.4; --------hsATCtd--- ; cor=0.753; Ncor=0.479; logoDP=0.210; NsEucl=0.883; NSW=0.904; rcor=17; rNcor=19; rlogoDP=27; rNsEucl=23; rNSW=11; rank_mean=19.400; match_rank=24 a 0 0 0 0 0 0 0 0 28 24 99 7 5 23 26 0 0 0 c 0 0 0 0 0 0 0 0 26 31 0 1 86 13 23 0 0 0 g 0 0 0 0 0 0 0 0 20 32 0 0 1 24 25 0 0 0 t 0 0 0 0 0 0 0 0 26 13 1 92 8 40 26 0 0 0
ARR5_Mo17_1_EEAD0206_EEADannot_rc_shift4 (ARR5_Mo17_1:EEAD0206:EEADannot_rc)	0.727	0.519	2.302	0.883	0.864	20	14	17	22	27	20.000	25	; oligos_7nt_mkv5_m5 versus ARR5_Mo17_1_EEAD0206_EEADannot_rc (ARR5_Mo17_1:EEAD0206:EEADannot_rc); m=25/28; ncol2=8; w=-3; offset=-3; strand=R; shift=4; score= 20; ----AGATyCAT------ ; cor=0.727; Ncor=0.519; logoDP=2.302; NsEucl=0.883; NSW=0.864; rcor=20; rNcor=14; rlogoDP=17; rNsEucl=22; rNSW=27; rank_mean=20.000; match_rank=25 a 0 0 0 0 81 6 99 1 1 1 97 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 9 34 94 0 2 0 0 0 0 0 0 g 0 0 0 0 18 91 1 0 1 0 3 0 0 0 0 0 0 0 t 0 0 0 0 1 3 0 90 64 5 0 97 0 0 0 0 0 0
ARR2_MA0949.2_JASPAR_shift7 (ARR2:MA0949.2:JASPAR)	0.703	0.511	4.133	0.870	0.866	28	15	10	25	26	20.800	26	; oligos_7nt_mkv5_m5 versus ARR2_MA0949.2_JASPAR (ARR2:MA0949.2:JASPAR); m=26/28; ncol2=19; w=0; offset=0; strand=D; shift=7; score= 20.8; -------mGwATCTT--- ; cor=0.703; Ncor=0.511; logoDP=4.133; NsEucl=0.870; NSW=0.866; rcor=28; rNcor=15; rlogoDP=10; rNsEucl=25; rNSW=26; rank_mean=20.800; match_rank=26 a 0 0 0 0 0 0 0 338 214 476 1000 0 0 0 162 0 0 0 c 0 0 0 0 0 0 0 572 0 0 0 0 1000 0 76 0 0 0 g 0 0 0 0 0 0 0 45 786 214 0 0 0 0 76 0 0 0 t 0 0 0 0 0 0 0 45 0 309 0 1000 0 1000 687 0 0 0
GATA15.DAP_M0283_AthalianaCistrome_shift0 (GATA15.DAP:M0283:AthalianaCistrome)	0.716	0.415	3.393	0.896	0.880	25	27	13	17	23	21.000	27	; oligos_7nt_mkv5_m5 versus GATA15.DAP_M0283_AthalianaCistrome (GATA15.DAP:M0283:AthalianaCistrome); m=27/28; ncol2=15; w=-7; offset=-7; strand=D; shift=0; score= 21; SATCATCATCATCAT--- ; cor=0.716; Ncor=0.415; logoDP=3.393; NsEucl=0.896; NSW=0.880; rcor=25; rNcor=27; rlogoDP=13; rNsEucl=17; rNSW=23; rank_mean=21.000; match_rank=27 a 3 323 4 7 331 1 7 312 18 21 308 12 15 287 10 0 0 0 c 238 0 16 255 0 12 302 7 25 243 2 17 298 4 26 0 0 0 g 86 5 0 72 7 0 15 4 6 61 13 7 11 17 13 0 0 0 t 15 14 322 8 4 329 18 19 293 17 19 306 18 34 293 0 0 0
RKD2.ampDAP_M0727_AthalianaCistrome_rc_shift2 (RKD2.ampDAP:M0727:AthalianaCistrome_rc)	0.722	0.451	0.910	0.894	0.887	24	23	18	20	21	21.200	28	; oligos_7nt_mkv5_m5 versus RKD2.ampDAP_M0727_AthalianaCistrome_rc (RKD2.ampDAP:M0727:AthalianaCistrome_rc); m=28/28; ncol2=; w=-5; offset=-5; strand=R; shift=2; score= 21.2; ------------------ ; cor=0.722; Ncor=0.451; logoDP=0.910; NsEucl=0.894; NSW=0.887; rcor=24; rNcor=23; rlogoDP=18; rNsEucl=20; rNSW=21; rank_mean=21.200; match_rank=28 a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0