

rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_query_matrices.homer -from homer -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster1_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster1_input_motifs_processed_1.tf -from tf -to transfac -prefix_id cluster1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster1_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster1_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_18_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_19_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_20_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_20_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_21_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_21_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_22_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_22_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_23_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_23_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_24_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_24_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_25_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_25_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_26_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_26_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_27_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_27_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/cluster_28_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_data/cluster_28_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m32_homer_32.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m38_homer_38.BBCTTATCTS_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m54_homer_54.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m64_homer_64.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m35_homer_35.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m118_homer_118.GTTGCCATGGCAACM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m129_homer_129.CGGTTGCCATGGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m105_homer_105.SCCTAGCAACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m56_homer_56.TGTTKCCTAGCAACM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m21_homer_21.GGAAGTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m35_homer_35.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m32_homer_32.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m38_homer_38.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m54_homer_54.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m64_homer_64.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m148_homer_148.GGTTGCCATGGCAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m118_homer_118.GTTGCCATGGCAACM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m129_homer_129.CGGTTGCCATGGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m25_homer_25.MGGAAGTGAAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m21_homer_21.GGAAGTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m35_homer_35.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_YjFSWC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_Mf990h


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_x5UoZX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_xCQwC9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_18rB1W


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_gVK1TR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_ewZq1W


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_WaUo1W


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172019_H5dNhF


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m80_homer_80.AGATAAGANN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m82_homer_82.AGATAASR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m32_homer_32.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m38_homer_38.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m54_homer_54.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m64_homer_64.NBWGATAAGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m80_homer_80.AGATAAGANN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m82_homer_82.AGATAASR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m125_homer_125.ACTGAAACCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m25_homer_25.MGGAAGTGAAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m21_homer_21.GGAAGTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m35_homer_35.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m148_homer_148.GGTTGCCATGGCAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m118_homer_118.GTTGCCATGGCAACM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m129_homer_129.CGGTTGCCATGGCAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m105_homer_105.SCCTAGCAACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m56_homer_56.TGTTKCCTAGCAACM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m140_homer_140.NAGTTTCABTHTGACTNW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m125_homer_125.ACTGAAACCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m25_homer_25.MGGAAGTGAAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m21_homer_21.GGAAGTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m35_homer_35.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172020_CV4EDX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172020_xyNrsG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172020_kKwpwd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172020_qj8L1W


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172020_ggJXMr


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_5/cluster_10_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_4/cluster_10_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m136_homer_136.VNAGGKCAAAGGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m146_homer_146.TGACCTTTGCCCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m133_homer_133.NRBCARRGGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m136_homer_136.VNAGGKCAAAGGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m146_homer_146.TGACCTTTGCCCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m123_homer_123.GTTAATNATTAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m135_homer_135.GGTTAAWCATTAA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m109_homer_109.VGGGRATTYCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m93_homer_93.GGGGGAATCCCC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m141_homer_141.YCTTTGTTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m133_homer_133.NRBCARRGGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m136_homer_136.VNAGGKCAAAGGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m146_homer_146.TGACCTTTGCCCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172022_E4bxyO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172022_QmJsOi


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172022_AukYfA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172022_3MxhnE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172022_fgXMgF


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m23_homer_23.CYTGGCABNSTGCCAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m61_homer_61.CTGGCAGSCTGCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m41_homer_41.AYAGTGCCMYCTRGTGGCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m98_homer_98.CNNBRGCGCCCCCTGSTGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m101_homer_101.TGTCANYT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m145_homer_145.VGCTGWCAVB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m127_homer_127.AAGGTGTKAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m128_homer_128.AGGTGTCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m134_homer_134.YTGWCADY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m50_homer_50.YTGCCAAG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172024_kGbY7t


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172024_WZjQ2G


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172024_WK60m4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172024_kfOCNx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172024_TaFFMY


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_3/cluster_17_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m134_homer_134.YTGWCADY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m50_homer_50.YTGCCAAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m101_homer_101.TGTCANYT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m145_homer_145.VGCTGWCAVB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m88_homer_88.GGTGYTGACAGS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m134_homer_134.YTGWCADY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m50_homer_50.YTGCCAAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m101_homer_101.TGTCANYT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m145_homer_145.VGCTGWCAVB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m127_homer_127.AAGGTGTKAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m128_homer_128.AGGTGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m88_homer_88.GGTGYTGACAGS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m134_homer_134.YTGWCADY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m50_homer_50.YTGCCAAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m101_homer_101.TGTCANYT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m145_homer_145.VGCTGWCAVB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172025_a3Nzmo


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172025_vdjy8M


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172025_pAVMIh


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_5/cluster_17_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_6/cluster_17_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_4/cluster_17_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m40_homer_40.RTTATGYAAB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m57_homer_57.ATTGCGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m100_homer_100.NHAACBGYYV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m143_homer_143.GGCVGTTR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172026_4TQD0N


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172026_okWuNy


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m83_homer_83.DRTGTTGCAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m40_homer_40.RTTATGYAAB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m57_homer_57.ATTGCGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m113_homer_113.NAMCAGCTGK_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m132_homer_132.MCAGCTGBYH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172027_KJwQaH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172027_5a558b


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172027_3u5QqV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172027_HY4Tz0


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m117_homer_117.ACCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m138_homer_138.GCCATCTGTT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m131_homer_131.ATTTGCATAW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m137_homer_137.TRTTTACTTW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m89_homer_89.RCCATMTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m117_homer_117.ACCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m138_homer_138.GCCATCTGTT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m151_homer_151.VCCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172028_B6bSCG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172028_qP2UlX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172028_fZEEjA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172028_rmJKDs


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m90_homer_90.VNRVCAGCTGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m99_homer_99.NNVVCAGCTGBN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m45_homer_45.AGGAARCAGCTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m53_homer_53.CTGTTTAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m108_homer_108.SMCATCTGKH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m89_homer_89.RCCATMTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m117_homer_117.ACCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m138_homer_138.GCCATCTGTT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172029_FFdyDn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172029_e1WthK


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172029_h6wofZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172029_Wp4py1


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m116_homer_116.TTCAAAWTAAAAGTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m107_homer_107.GTCACGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m51_homer_51.RTCATGTGAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices_temp.tf -from tf -to tf  -attr name cluster_22 -attr accession cluster_22 -set_attr merged_AC 'cluster1:::homer_116.TTCAAAWTAAAAGTC' -set_attr merged_ID 'homer_116.TTCAAAWTAAAAGTC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m106_homer_106.KRRCAGCTGGTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m90_homer_90.VNRVCAGCTGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m99_homer_99.NNVVCAGCTGBN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m114_homer_114.RCCACGTGGYYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172030_IPOFmr


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172030_uCLspt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172030_CvPnCW


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m120_homer_120.ATGCATWATGCATRW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m96_homer_96.CCTGCTGAGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf -from tf -to tf  -attr name cluster_23 -attr accession cluster_23 -set_attr merged_AC 'cluster1:::homer_120.ATGCATWATGCATRW' -set_attr merged_ID 'homer_120.ATGCATWATGCATRW' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf -from tf -to tf  -attr name cluster_24 -attr accession cluster_24 -set_attr merged_AC 'cluster1:::homer_96.CCTGCTGAGH' -set_attr merged_ID 'homer_96.CCTGCTGAGH' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m113_homer_113.NAMCAGCTGK_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m132_homer_132.MCAGCTGBYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m106_homer_106.KRRCAGCTGGTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m90_homer_90.VNRVCAGCTGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m99_homer_99.NNVVCAGCTGBN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m151_homer_151.VCCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m114_homer_114.RCCACGTGGYYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m108_homer_108.SMCATCTGKH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m89_homer_89.RCCATMTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m117_homer_117.ACCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m138_homer_138.GCCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m113_homer_113.NAMCAGCTGK_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m132_homer_132.MCAGCTGBYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m106_homer_106.KRRCAGCTGGTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m90_homer_90.VNRVCAGCTGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m99_homer_99.NNVVCAGCTGBN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172031_VggCTv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172031_9vvyzJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172031_Qe4Kdx


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m121_homer_121.SCCTSAGGSCAW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m112_homer_112.GTCACGCTCSCTGM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf -from tf -to tf  -attr name cluster_25 -attr accession cluster_25 -set_attr merged_AC 'cluster1:::homer_121.SCCTSAGGSCAW' -set_attr merged_ID 'homer_121.SCCTSAGGSCAW' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf -from tf -to tf  -attr name cluster_26 -attr accession cluster_26 -set_attr merged_AC 'cluster1:::homer_112.GTCACGCTCSCTGM' -set_attr merged_ID 'homer_112.GTCACGCTCSCTGM' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m95_homer_95.DGCACACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m151_homer_151.VCCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m114_homer_114.RCCACGTGGYYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m107_homer_107.GTCACGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m51_homer_51.RTCATGTGAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m95_homer_95.DGCACACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m151_homer_151.VCCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m114_homer_114.RCCACGTGGYYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m108_homer_108.SMCATCTGKH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m89_homer_89.RCCATMTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m117_homer_117.ACCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m138_homer_138.GCCATCTGTT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m113_homer_113.NAMCAGCTGK_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m132_homer_132.MCAGCTGBYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m106_homer_106.KRRCAGCTGGTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m90_homer_90.VNRVCAGCTGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m99_homer_99.NNVVCAGCTGBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m107_homer_107.GTCACGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m51_homer_51.RTCATGTGAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m95_homer_95.DGCACACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m151_homer_151.VCCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m66_homer_66.GNCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m84_homer_84.GHCACGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m114_homer_114.RCCACGTGGYYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m73_homer_73.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m124_homer_124.VVCCACGTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m87_homer_87.VRCCACGTGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_nb_motifs_19.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172032_ucsthV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172032_1E5uiM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172032_m4LY2U


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m147_homer_147.TWGHWACAWTGTWDC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m150_homer_150.CRGCTGBNGNSNNSAGATAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf -from tf -to tf  -attr name cluster_27 -attr accession cluster_27 -set_attr merged_AC 'cluster1:::homer_147.TWGHWACAWTGTWDC' -set_attr merged_ID 'homer_147.TWGHWACAWTGTWDC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf -from tf -to tf  -attr name cluster_28 -attr accession cluster_28 -set_attr merged_AC 'cluster1:::homer_150.CRGCTGBNGNSNNSAGATAA' -set_attr merged_ID 'homer_150.CRGCTGBNGNSNNSAGATAA' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m42_homer_42.ATGACGTCATCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m68_homer_68.ATGACGTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m34_homer_34.NGRTGACGTCAY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m43_homer_43.NRRTGACGTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m34_homer_34.NGRTGACGTCAY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m43_homer_43.NRRTGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m42_homer_42.ATGACGTCATCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m68_homer_68.ATGACGTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_ELnI5p


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_EKc0Nr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_UwLYi7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_PRhDjR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_3jx6KF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_gEuVzt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_UY0ABx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_frA8I6


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172034_YGCftQ


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m30_homer_30.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m28_homer_28.VVATGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m34_homer_34.NGRTGACGTCAY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m43_homer_43.NRRTGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m42_homer_42.ATGACGTCATCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m68_homer_68.ATGACGTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m39_homer_39.GATGACGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m28_homer_28.VVATGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m34_homer_34.NGRTGACGTCAY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m43_homer_43.NRRTGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m42_homer_42.ATGACGTCATCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m68_homer_68.ATGACGTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m44_homer_44.VTTACGTAAYNNNNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m39_homer_39.GATGACGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m28_homer_28.VVATGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m34_homer_34.NGRTGACGTCAY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m43_homer_43.NRRTGACGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m42_homer_42.ATGACGTCATCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m68_homer_68.ATGACGTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_EIyR0j


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_qJ8l9S


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_ABxJfD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_HXTHsA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_EalpkT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_fI1m19


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_wU4FJX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_DK6rPO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172035_PPLyvv


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m149_homer_149.TGCTGACTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m58_homer_58.TGCTGAGTCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m30_homer_30.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_Wfcyib


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_zibRGx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_bFKBpm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_1yscjr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_oqN2Jw


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172036_7rgk8p


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m97_homer_97.GGCMATGAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m104_homer_104.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m142_homer_142.NATTTCCNGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m110_homer_110.CYHATAAAAN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m97_homer_97.GGCMATGAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m139_homer_139.GATGACTCAGCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m30_homer_30.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m149_homer_149.TGCTGACTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m58_homer_58.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m139_homer_139.GATGACTCAGCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m30_homer_30.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m75_homer_75.AWWWTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m149_homer_149.TGCTGACTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m58_homer_58.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m139_homer_139.GATGACTCAGCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m30_homer_30.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m26_homer_26.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m27_homer_27.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m18_homer_18.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m22_homer_22.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m29_homer_29.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m37_homer_37.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m19_homer_19.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m46_homer_46.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_OdbBJG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_CMrRPB


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_vwATfg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_XF6ZZm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_mYcOGU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_47UQvi


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_d0248r


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_PTv5hG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172037_ZVfKLV


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m126_homer_126.RTGATTTATGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m130_homer_130.CMATYAATCW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m111_homer_111.NGYCATAAAWCH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m110_homer_110.CYHATAAAAN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m97_homer_97.GGCMATGAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m102_homer_102.GSCTWTAAAAGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m111_homer_111.NGYCATAAAWCH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m110_homer_110.CYHATAAAAN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m97_homer_97.GGCMATGAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_L8TabB


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_HiKoDD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_lBIiHe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_QGshsu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_GGkpem


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172038_fvczNT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m70_homer_70.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m91_homer_91.CCCCTCCCCCAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m78_homer_78.NYTTCCWGGAAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m104_homer_104.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m142_homer_142.NATTTCCNGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m126_homer_126.RTGATTTATGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m130_homer_130.CMATYAATCW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m102_homer_102.GSCTWTAAAAGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m111_homer_111.NGYCATAAAWCH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m110_homer_110.CYHATAAAAN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m97_homer_97.GGCMATGAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m119_homer_119.VGCCATAAAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m72_homer_72.TTTTATGGCM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_unzoZU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_kbuCqD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_0aTCNw


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_lEY5Qg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_6oUZTl


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_F5zeNP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172039_rcTa83


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m144_homer_144.CTTCCGGGAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m78_homer_78.NYTTCCWGGAAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m104_homer_104.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m142_homer_142.NATTTCCNGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m2_homer_2.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_FlfKlV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_K1LuNe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_O3RY2u


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_E1jNt1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_bZAEfb


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172040_RNnkhB


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m49_homer_49.GCTATTTTTAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m60_homer_60.DCYAAAAATAGM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m2_homer_2.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m15_homer_15.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m2_homer_2.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m63_homer_63.RCAGGATGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m15_homer_15.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m2_homer_2.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_G2zVfd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_jIdsBS


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_kMyjwi


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_nEOd5A


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_nb_motifs_20.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_qLHvyb


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_nb_motifs_22.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_QZVX96


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_nb_motifs_21.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172041_OxBZRx


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_8/cluster_7_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_9/cluster_7_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m92_homer_92.GCTATTTTTGGM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m49_homer_49.GCTATTTTTAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m60_homer_60.DCYAAAAATAGM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m115_homer_115.GGCCCCGCCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m74_homer_74.YGGCCCCGCCCC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m115_homer_115.GGCCCCGCCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m74_homer_74.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m144_homer_144.CTTCCGGGAA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m78_homer_78.NYTTCCWGGAAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m104_homer_104.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m142_homer_142.NATTTCCNGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m63_homer_63.RCAGGATGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m15_homer_15.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m12_homer_12.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m16_homer_16.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m5_homer_5.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m17_homer_17.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m14_homer_14.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m6_homer_6.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m20_homer_20.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m31_homer_31.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m8_homer_8.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m9_homer_9.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m10_homer_10.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m3_homer_3.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m2_homer_2.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m4_homer_4.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m13_homer_13.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m24_homer_24.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m36_homer_36.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m11_homer_11.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m1_homer_1.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m7_homer_7.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172042_0KXqu0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172042_yVnI6r


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172042_75UJwU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172042_cg01hJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_nb_motifs_26.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172042_KsbQEm


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_10/cluster_7_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_11/cluster_7_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_12/cluster_7_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m103_homer_103.GGGGGGGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m70_homer_70.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m91_homer_91.CCCCTCCCCCAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m62_homer_62.NRGCCCCRCCCHBNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m115_homer_115.GGCCCCGCCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m74_homer_74.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m62_homer_62.NRGCCCCRCCCHBNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172043_7VijF8


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172043_Foybpz


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_nb_motifs_14.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172043_sPPiTT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_13/cluster_7_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_15/cluster_7_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_14/cluster_7_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m55_homer_55.AAACCACARM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m94_homer_94.GCTGTGGTTW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m71_homer_71.SAAACCACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m55_homer_55.AAACCACARM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m94_homer_94.GCTGTGGTTW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m86_homer_86.NWAACCACADNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m71_homer_71.SAAACCACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m55_homer_55.AAACCACARM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m94_homer_94.GCTGTGGTTW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m115_homer_115.GGCCCCGCCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m74_homer_74.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m62_homer_62.NRGCCCCRCCCHBNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m103_homer_103.GGGGGGGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m70_homer_70.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m91_homer_91.CCCCTCCCCCAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m122_homer_122.TGCGTGGGYG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m115_homer_115.GGCCCCGCCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m74_homer_74.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m47_homer_47.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m77_homer_77.GCCACACCCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m79_homer_79.GGGGGTGTGTCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m81_homer_81.NWGGGTGTGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m69_homer_69.MKGGGYGTGGCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m85_homer_85.VDGGGYGGGGCY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m62_homer_62.NRGCCCCRCCCHBNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m48_homer_48.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m65_homer_65.GCYCCGCCCCYH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m67_homer_67.GCCACRCCCACY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m59_homer_59.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m76_homer_76.RGGGGGCGGGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m103_homer_103.GGGGGGGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m70_homer_70.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m91_homer_91.CCCCTCCCCCAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172044_jUvXuy


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172044_QzFDRZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172044_HNgd6Z


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_nb_motifs_17.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172044_vCB94R


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172044_qeJEpi


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_16/cluster_7_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_17/cluster_7_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m52_homer_52.RGCCACGDRR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m86_homer_86.NWAACCACADNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m71_homer_71.SAAACCACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m55_homer_55.AAACCACARM_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/cluster1_m94_homer_94.GCTGTGGTTW_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.172045_K8V4dU


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.171945_gthpPt/matrix-clustering_portable_logo_tree.html
