# RSAT - matrix-clustering result

### Analysis: cluster1 (09/04/2026 17:20)

## Results Summary

Nb Input motifs | Nb Input collections | Nb Clusters Found | Download Root motifs | Complete results [zip] | Parameters used
Linkage method | Similarity metric | Thresholds to partition the tree
151 | 1 | 28 | Download | Download |
average | Ncor | Ncor = 0.4 cor = 0.6

| Logo Forest (dynamic browsing) Logo Forest (rapid overview - low image quality) cluster_1 cluster_2 cluster_3 cluster_4 cluster_5 cluster_6 cluster_7 cluster_8 cluster_9 cluster_10 cluster_11 cluster_12 cluster_13 cluster_14 cluster_15 cluster_16 cluster_17 cluster_18 cluster_19 cluster_20 cluster_21 cluster_22 cluster_23 cluster_24 cluster_25 cluster_26 cluster_27 cluster_28
Clusters Summary ## Clusters Summary Table
Root Motif | Root Motif (Reverse) | Cluster ID | # Motifs | Motif_Name::Collection | Number of Motifs by Collection | Root Motif (transfac Format)
--- | --- | --- | --- | --- | --- | ---
| cluster_1 | 6 | homer_32.SAGATAAGRV::cluster1:: homer_38.BBCTTATCTS::cluster1:: homer_54.YCTTATCTBN::cluster1:: homer_64.NBWGATAAGR::cluster1:: homer_80.AGATAAGANN::cluster1:: homer_82.AGATAASR::cluster1:: | cluster1::6_motifs | Show matrix
|  | cluster_2 | 19 | homer_108.SMCATCTGKH::cluster1:: homer_89.RCCATMTGTT::cluster1:: homer_117.ACCATCTGTT::cluster1:: homer_138.GCCATCTGTT::cluster1:: homer_113.NAMCAGCTGK::cluster1:: homer_132.MCAGCTGBYH::cluster1:: homer_106.KRRCAGCTGGTS::cluster1:: homer_90.VNRVCAGCTGGY::cluster1:: homer_99.NNVVCAGCTGBN::cluster1:: homer_107.GTCACGTGGT::cluster1:: homer_51.RTCATGTGAC::cluster1:: homer_95.DGCACACGTG::cluster1:: homer_151.VCCACGTG::cluster1:: homer_66.GNCACGTG::cluster1:: homer_84.GHCACGTG::cluster1:: homer_114.RCCACGTGGYYN::cluster1:: homer_73.SGTCACGTGR::cluster1:: homer_124.VVCCACGTGG::cluster1:: homer_87.VRCCACGTGG::cluster1:: | cluster1::19_motifs | Show matrix
|  | cluster_3 | 13 | homer_75.AWWWTGCTGAGTCAT::cluster1:: homer_149.TGCTGACTCA::cluster1:: homer_58.TGCTGAGTCA::cluster1:: homer_139.GATGACTCAGCA::cluster1:: homer_30.VTGACTCATC::cluster1:: homer_26.RATGASTCAT::cluster1:: homer_27.DATGASTCAT::cluster1:: homer_18.NDATGASTCAYN::cluster1:: homer_22.NNATGASTCATH::cluster1:: homer_29.GGATGACTCATC::cluster1:: homer_37.NATGASTCABNN::cluster1:: homer_19.DATGASTCATHN::cluster1:: homer_46.GATGASTCATCN::cluster1:: | cluster1::13_motifs | Show matrix
|  | cluster_4 | 26 | homer_144.CTTCCGGGAA::cluster1:: homer_78.NYTTCCWGGAAR::cluster1:: homer_104.SVYTTCCNGGAARB::cluster1:: homer_142.NATTTCCNGGAAAT::cluster1:: homer_63.RCAGGATGTGGT::cluster1:: homer_15.AAAGRGGAAGTG::cluster1:: homer_12.MACAGGAAGT::cluster1:: homer_16.VACAGGAAAT::cluster1:: homer_5.ATTTCCTGTN::cluster1:: homer_17.ASWTCCTGBT::cluster1:: homer_14.RACCGGAAGT::cluster1:: homer_6.AACCGGAAGT::cluster1:: homer_20.AVCCGGAAGT::cluster1:: homer_31.AACCGGAAGT::cluster1:: homer_8.ACTTCCKGKT::cluster1:: homer_9.AVCAGGAAGT::cluster1:: homer_10.ANCAGGAAGT::cluster1:: homer_3.ACVAGGAAGT::cluster1:: homer_2.NNAYTTCCTGHN::cluster1:: homer_4.NRYTTCCGGH::cluster1:: homer_13.ACCGGAAGTG::cluster1:: homer_24.NRYTTCCGGY::cluster1:: homer_36.HACTTCCGGY::cluster1:: homer_11.AGAGGAAGTG::cluster1:: homer_1.ACAGGAAGTG::cluster1:: homer_7.ACAGGAAGTG::cluster1:: | cluster1::26_motifs | Show matrix
|  | cluster_5 | 7 | homer_44.VTTACGTAAYNNNNN::cluster1:: homer_39.GATGACGTCA::cluster1:: homer_28.VVATGACGTCAT::cluster1:: homer_34.NGRTGACGTCAY::cluster1:: homer_43.NRRTGACGTCAT::cluster1:: homer_42.ATGACGTCATCY::cluster1:: homer_68.ATGACGTCATCN::cluster1:: | cluster1::7_motifs | Show matrix
|  | cluster_6 | 8 | homer_126.RTGATTTATGGY::cluster1:: homer_130.CMATYAATCW::cluster1:: homer_102.GSCTWTAAAAGG::cluster1:: homer_111.NGYCATAAAWCH::cluster1:: homer_110.CYHATAAAAN::cluster1:: homer_97.GGCMATGAAA::cluster1:: homer_119.VGCCATAAAA::cluster1:: homer_72.TTTTATGGCM::cluster1:: | cluster1::8_motifs | Show matrix
|  | cluster_7 | 18 | homer_122.TGCGTGGGYG::cluster1:: homer_115.GGCCCCGCCCCC::cluster1:: homer_74.YGGCCCCGCCCC::cluster1:: homer_47.DGGGYGKGGC::cluster1:: homer_77.GCCACACCCA::cluster1:: homer_79.GGGGGTGTGTCC::cluster1:: homer_81.NWGGGTGTGGCY::cluster1:: homer_69.MKGGGYGTGGCC::cluster1:: homer_85.VDGGGYGGGGCY::cluster1:: homer_62.NRGCCCCRCCCHBNN::cluster1:: homer_48.RGKGGGCGGAGC::cluster1:: homer_65.GCYCCGCCCCYH::cluster1:: homer_67.GCCACRCCCACY::cluster1:: homer_59.RGKGGGCGKGGC::cluster1:: homer_76.RGGGGGCGGGGC::cluster1:: homer_103.GGGGGGGG::cluster1:: homer_70.CCCCTCCCCCAC::cluster1:: homer_91.CCCCTCCCCCAC::cluster1:: | cluster1::18_motifs | Show matrix
|  | cluster_8 | 3 | homer_92.GCTATTTTTGGM::cluster1:: homer_49.GCTATTTTTAGC::cluster1:: homer_60.DCYAAAAATAGM::cluster1:: | cluster1::3_motifs | Show matrix
|  | cluster_9 | 5 | homer_52.RGCCACGDRR::cluster1:: homer_86.NWAACCACADNN::cluster1:: homer_71.SAAACCACAG::cluster1:: homer_55.AAACCACARM::cluster1:: homer_94.GCTGTGGTTW::cluster1:: | cluster1::5_motifs | Show matrix
|  | cluster_10 | 6 | homer_140.NAGTTTCABTHTGACTNW::cluster1:: homer_125.ACTGAAACCA::cluster1:: homer_25.MGGAAGTGAAAC::cluster1:: homer_21.GGAAGTGAAAST::cluster1:: homer_33.GRAASTGAAAST::cluster1:: homer_35.AGTTTCAKTTTC::cluster1:: | cluster1::6_motifs | Show matrix
|  | cluster_11 | 5 | homer_148.GGTTGCCATGGCAA::cluster1:: homer_118.GTTGCCATGGCAACM::cluster1:: homer_129.CGGTTGCCATGGCAAC::cluster1:: homer_105.SCCTAGCAACAG::cluster1:: homer_56.TGTTKCCTAGCAACM::cluster1:: | cluster1::5_motifs | Show matrix
|  | cluster_12 | 4 | homer_141.YCTTTGTTCC::cluster1:: homer_133.NRBCARRGGTCA::cluster1:: homer_136.VNAGGKCAAAGGTCA::cluster1:: homer_146.TGACCTTTGCCCCA::cluster1:: | cluster1::4_motifs | Show matrix
|  | cluster_13 | 2 | homer_123.GTTAATNATTAA::cluster1:: homer_135.GGTTAAWCATTAA::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_14 | 2 | homer_109.VGGGRATTYCCC::cluster1:: homer_93.GGGGGAATCCCC::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_15 | 2 | homer_23.CYTGGCABNSTGCCAR::cluster1:: homer_61.CTGGCAGSCTGCCA::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_16 | 2 | homer_41.AYAGTGCCMYCTRGTGGCCA::cluster1:: homer_98.CNNBRGCGCCCCCTGSTGGC::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_17 | 7 | homer_127.AAGGTGTKAA::cluster1:: homer_128.AGGTGTCA::cluster1:: homer_88.GGTGYTGACAGS::cluster1:: homer_134.YTGWCADY::cluster1:: homer_50.YTGCCAAG::cluster1:: homer_101.TGTCANYT::cluster1:: homer_145.VGCTGWCAVB::cluster1:: | cluster1::7_motifs | Show matrix
|  | cluster_18 | 3 | homer_83.DRTGTTGCAA::cluster1:: homer_40.RTTATGYAAB::cluster1:: homer_57.ATTGCGCAAC::cluster1:: | cluster1::3_motifs | Show matrix
|  | cluster_19 | 2 | homer_100.NHAACBGYYV::cluster1:: homer_143.GGCVGTTR::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_20 | 2 | homer_131.ATTTGCATAW::cluster1:: homer_137.TRTTTACTTW::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_21 | 2 | homer_45.AGGAARCAGCTG::cluster1:: homer_53.CTGTTTAC::cluster1:: | cluster1::2_motifs | Show matrix
|  | cluster_22 | 1 | homer_116.TTCAAAWTAAAAGTC::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_23 | 1 | homer_120.ATGCATWATGCATRW::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_24 | 1 | homer_96.CCTGCTGAGH::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_25 | 1 | homer_121.SCCTSAGGSCAW::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_26 | 1 | homer_112.GTCACGCTCSCTGM::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_27 | 1 | homer_147.TWGHWACAWTGTWDC::cluster1 | cluster1 : 1 motif | Show matrix
|  | cluster_28 | 1 | homer_150.CRGCTGBNGNSNNSAGATAA::cluster1 | cluster1 : 1 motif | Show matrix

- Note: by default the table displays the first 50 clusters. Click on the Show X entries button to display more (or less) clusters.
- Click on the column names to change the order of the data.
- Use the Search window to find your motif (s) of interest.

Individual Cluster View

## Individual Cluster View

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cluster_1
cluster_2
cluster_3
cluster_4
cluster_5
cluster_6
cluster_7
cluster_8
cluster_9
cluster_10
cluster_11
cluster_12
cluster_13
cluster_14
cluster_15
cluster_16
cluster_17
cluster_18
cluster_19
cluster_20
cluster_21
cluster_22
cluster_23
cluster_24
cluster_25
cluster_26
cluster_27
cluster_28
Display Logo Trees
cluster_1
cluster_2
cluster_3
cluster_4
cluster_5
cluster_6
cluster_7
cluster_8
cluster_9
cluster_10
cluster_11
cluster_12
cluster_13
cluster_14
cluster_15
cluster_16
cluster_17
cluster_18
cluster_19
cluster_20
cluster_21
cluster_22
cluster_23
cluster_24
cluster_25
cluster_26
cluster_27
cluster_28
Display Branch-Motifs
cluster_1

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | -byCTTATCWs- |  |  | cluster1::2_motifs | PSSM | 8.91 | 201
Node 2 | --yCTTATCwsb |  |  | cluster1::2_motifs | PSSM | 7.17 | 200
Node 3 | -byCTTATCwsb |  |  | cluster1::4_motifs | PSSM | 7.93 | 401
Node 4 | kaysTTATCW-- |  |  | cluster1::2_motifs | PSSM | 6.80 | 201
Node 5 | kyycTTATCwsb |  |  | cluster1::6_motifs | PSSM | 7.44 | 600

cluster_2

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | --gwCACGTG--- |  |  | cluster1::2_motifs | PSSM | 7.11 | 202
Node 2 | -rrsCACGTGs-- |  |  | cluster1::2_motifs | PSSM | 8.38 | 202
Node 3 | -grmCAkmTGk-- |  |  | cluster1::2_motifs | PSSM | 7.82 | 200
Node 4 | --rrCAGATGGy- |  |  | cluster1::2_motifs | PSSM | 8.71 | 201
Node 5 | --rcCACGTG--- |  |  | cluster1::3_motifs | PSSM | 7.05 | 302
Node 6 | --raCAGMTGGy- |  |  | cluster1::3_motifs | PSSM | 7.51 | 301
Node 7 | rbrvCAGmTGby- |  |  | cluster1::2_motifs | PSSM | 5.94 | 202
Node 8 | -srcCACGTGg-- |  |  | cluster1::3_motifs | PSSM | 8.21 | 302
Node 9 | --rmCAGMTGgy- |  |  | cluster1::4_motifs | PSSM | 7.23 | 401
Node 10 | --rtCACrTGry- |  |  | cluster1::2_motifs | PSSM | 6.39 | 201
Node 11 | rkrvCAGmTGsyg |  |  | cluster1::3_motifs | PSSM | 6.60 | 302
Node 12 | dgrcCACGTGgy- |  |  | cluster1::4_motifs | PSSM | 8.18 | 402
Node 13 | rkrvCAKmTGkyg |  |  | cluster1::5_motifs | PSSM | 6.94 | 501
Node 14 | rkrvCAGmTGkyg |  |  | cluster1::9_motifs | PSSM | 6.94 | 902
Node 15 | dgrcCACGTGgy- |  |  | cluster1::7_motifs | PSSM | 7.74 | 703
Node 16 | dgrcCACGTGgy- |  |  | cluster1::8_motifs | PSSM | 7.73 | 802
Node 17 | dgryCACGTGgy- |  |  | cluster1::10_motifs | PSSM | 7.08 | 1002
Node 18 | rgrmCAsrTGgyg |  |  | cluster1::19_motifs | PSSM | 5.93 | 1902

cluster_3

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ----grrTGAsTCAyy |  |  | cluster1::2_motifs | PSSM | 8.92 | 201
Node 2 | -----daTGAsTCAt- |  |  | cluster1::2_motifs | PSSM | 7.05 | 202
Node 3 | ----kdaTGAsTCAyc |  |  | cluster1::2_motifs | PSSM | 6.99 | 201
Node 4 | ----grrTGAsTCAyy |  |  | cluster1::3_motifs | PSSM | 7.18 | 301
Node 5 | -----gmTGAsTCAy- |  |  | cluster1::3_motifs | PSSM | 7.45 | 302
Node 6 | ----grrTGAsTCAyy |  |  | cluster1::4_motifs | PSSM | 7.63 | 402
Node 7 | ----krrTGAsTCAyy |  |  | cluster1::6_motifs | PSSM | 7.31 | 603
Node 8 | ----tGCTGAsTCA-- |  |  | cluster1::2_motifs | PSSM | 8.34 | 200
Node 9 | ----kgaTGAsTCAyy |  |  | cluster1::9_motifs | PSSM | 7.36 | 902
Node 10 | ----kgmTGAsTCAyc |  |  | cluster1::10_motifs | PSSM | 7.49 | 1002
Node 11 | ----tgmTGAsTCAyc |  |  | cluster1::12_motifs | PSSM | 7.37 | 1202
Node 12 | wwwwtgmTGAsTCAyc |  |  | cluster1::13_motifs | PSSM | 8.07 | 1302

cluster_4

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ---aaCmGGAAGt--- |  |  | cluster1::2_motifs | PSSM | 6.36 | 201
Node 2 | ---avCCGGAAGT--- |  |  | cluster1::2_motifs | PSSM | 8.37 | 201
Node 3 | ----rcCGGAAryr-- |  |  | cluster1::2_motifs | PSSM | 6.32 | 201
Node 4 | ---amsmGGAAGt--- |  |  | cluster1::2_motifs | PSSM | 7.11 | 201
Node 5 | ---aaCCGGAAGt--- |  |  | cluster1::4_motifs | PSSM | 7.21 | 401
Node 6 | ----rCCGGAAryr-- |  |  | cluster1::3_motifs | PSSM | 6.03 | 301
Node 7 | ---maCAGGAART--- |  |  | cluster1::2_motifs | PSSM | 9.55 | 202
Node 8 | ---AcvAGGAAGT--- |  |  | cluster1::2_motifs | PSSM | 8.69 | 201
Node 9 | ----rCAGGAAGTg-- |  |  | cluster1::2_motifs | PSSM | 8.81 | 201
Node 10 | ryTTCCwGGAArys-- |  |  | cluster1::2_motifs | PSSM | 8.60 | 201
Node 11 | ----rcCGGAAryr-- |  |  | cluster1::4_motifs | PSSM | 5.43 | 402
Node 12 | ---AcsmGGAAGT--- |  |  | cluster1::4_motifs | PSSM | 7.75 | 401
Node 13 | ---maCAGGAArT--- |  |  | cluster1::3_motifs | PSSM | 9.29 | 301
Node 14 | ---amcmGGAAGT--- |  |  | cluster1::8_motifs | PSSM | 7.17 | 801
Node 15 | ----asAGGAAGTg-- |  |  | cluster1::3_motifs | PSSM | 8.82 | 301
Node 16 | ryTTCCwGGAArys-- |  |  | cluster1::3_motifs | PSSM | 8.96 | 302
Node 17 | ---amcmGGAAGT--- |  |  | cluster1::9_motifs | PSSM | 7.04 | 901
Node 18 | ---aaCmGGAAgT--- |  |  | cluster1::12_motifs | PSSM | 7.23 | 1201
Node 19 | ----rcmGGAAgtg-- |  |  | cluster1::7_motifs | PSSM | 6.32 | 703
Node 20 | ---vrcmGGAArtgs- |  |  | cluster1::8_motifs | PSSM | 6.28 | 803
Node 21 | ryTTCCwGGAArys-- |  |  | cluster1::4_motifs | PSSM | 8.24 | 402
Node 22 | ---aacmGGAArtgs- |  |  | cluster1::20_motifs | PSSM | 6.90 | 2004
Node 23 | --aaacmGGAAgtgs- |  |  | cluster1::21_motifs | PSSM | 7.29 | 2103
Node 24 | --aaacmGGAAgTggk |  |  | cluster1::22_motifs | PSSM | 8.10 | 2204
Node 25 | ryTwmcmGGAArtggk |  |  | cluster1::26_motifs | PSSM | 8.04 | 2604

cluster_5

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ---sgrTGAcgTCAy |  |  | cluster1::2_motifs | PSSM | 5.92 | 202
Node 2 | ---kgrTGACGTCAy |  |  | cluster1::2_motifs | PSSM | 10.28 | 201
Node 3 | ---sgrTGAcgTCAy |  |  | cluster1::4_motifs | PSSM | 7.70 | 401
Node 4 | ---sgrTGAcgTCAy |  |  | cluster1::5_motifs | PSSM | 7.68 | 502
Node 5 | ---sgrTGAcgTCAy |  |  | cluster1::6_motifs | PSSM | 7.41 | 602
Node 6 | yarsgrTGAcgTCAy |  |  | cluster1::7_motifs | PSSM | 6.90 | 703

cluster_6

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ---tTTtAykrsc |  |  | cluster1::2_motifs | PSSM | 4.73 | 202
Node 2 | ---tTTyAtkrsc |  |  | cluster1::3_motifs | PSSM | 4.98 | 302
Node 3 | --dtTTyAtkrsc |  |  | cluster1::4_motifs | PSSM | 5.14 | 402
Node 4 | -kgtTTtAykrsc |  |  | cluster1::5_motifs | PSSM | 5.21 | 502
Node 5 | rwgATTwATkgy- |  |  | cluster1::2_motifs | PSSM | 6.02 | 201
Node 6 | -sctTTtAtdrsc |  |  | cluster1::6_motifs | PSSM | 5.11 | 602
Node 7 | rtswTTtAtdrsc |  |  | cluster1::8_motifs | PSSM | 4.85 | 801

cluster_7

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ---CCCCTCCCCCAc- |  |  | cluster1::2_motifs | PSSM | 12.63 | 200
Node 2 | --GcCmCrCCCmCy-- |  |  | cluster1::2_motifs | PSSM | 8.74 | 201
Node 3 | -rGCCmCrCCChk--- |  |  | cluster1::2_motifs | PSSM | 9.45 | 201
Node 4 | --gCyCCGCCCmch-- |  |  | cluster1::2_motifs | PSSM | 8.74 | 201
Node 5 | --GCCMCrCCCw---- |  |  | cluster1::2_motifs | PSSM | 9.43 | 201
Node 6 | --GcCmCrCCCmCy-- |  |  | cluster1::3_motifs | PSSM | 9.39 | 301
Node 7 | -rGCCmCrCCChk--- |  |  | cluster1::3_motifs | PSSM | 9.51 | 302
Node 8 | --GCymCGCCCmCy-- |  |  | cluster1::5_motifs | PSSM | 8.68 | 502
Node 9 | -rGcCMCrCCCmb--- |  |  | cluster1::4_motifs | PSSM | 9.37 | 402
Node 10 | ygGCCCCGCCCCc--- |  |  | cluster1::2_motifs | PSSM | 10.55 | 200
Node 11 | -rGCCMCrCCChb--- |  |  | cluster1::6_motifs | PSSM | 9.39 | 602
Node 12 | yrGCCmCrCCCms--- |  |  | cluster1::8_motifs | PSSM | 9.26 | 802
Node 13 | yrGCymCrCCCmcyc- |  |  | cluster1::6_motifs | PSSM | 8.73 | 603
Node 14 | yrGCCmCrCCCmcyc- |  |  | cluster1::14_motifs | PSSM | 8.95 | 1401
Node 15 | ---CCCCtCCCCCAc- |  |  | cluster1::3_motifs | PSSM | 11.77 | 300
Node 16 | yrGCCmCrCCCmchc- |  |  | cluster1::17_motifs | PSSM | 8.86 | 1700
Node 17 | yrGCCmCrCCCmcwca |  |  | cluster1::18_motifs | PSSM | 9.40 | 1800

cluster_8

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | gcyAaAAATAGm |  |  | cluster1::2_motifs | PSSM | 7.88 | 201
Node 2 | kcyawAAATAGm |  |  | cluster1::3_motifs | PSSM | 7.37 | 301

cluster_9

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | -wAACCACArm- |  |  | cluster1::2_motifs | PSSM | 8.51 | 202
Node 2 | swAACCACArm- |  |  | cluster1::3_motifs | PSSM | 8.78 | 302
Node 3 | swAACCACArmm |  |  | cluster1::4_motifs | PSSM | 8.40 | 402
Node 4 | swaACCACArma |  |  | cluster1::5_motifs | PSSM | 7.53 | 503

cluster_10

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | -rsTTTCrsTTyC----- |  |  | cluster1::2_motifs | PSSM | 8.73 | 200
Node 2 | -asTTTCasTTyC----- |  |  | cluster1::3_motifs | PSSM | 9.22 | 301
Node 3 | -asTTTCasTTYCk---- |  |  | cluster1::4_motifs | PSSM | 9.17 | 401
Node 4 | yrsTTTCasTTYCk---- |  |  | cluster1::5_motifs | PSSM | 8.87 | 501
Node 5 | yrsTTTCasTTycasTsw |  |  | cluster1::6_motifs | PSSM | 8.87 | 602

cluster_11

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | GTTgCCATGGcAACcg |  |  | cluster1::2_motifs | PSSM | 12.47 | 201
Node 2 | GTTgCCATGGcAACmg |  |  | cluster1::3_motifs | PSSM | 12.27 | 301
Node 3 | kGTykCcTrGCAACmg |  |  | cluster1::2_motifs | PSSM | 11.28 | 200
Node 4 | GTTkcCmTrGCAACmg |  |  | cluster1::5_motifs | PSSM | 10.10 | 500

cluster_12

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | TGaCCTyTgmCCyak |  |  | cluster1::2_motifs | PSSM | 8.15 | 202
Node 2 | TGACCTyTgmccyak |  |  | cluster1::3_motifs | PSSM | 7.32 | 302
Node 3 | TGACCTYTGyycyak |  |  | cluster1::4_motifs | PSSM | 7.24 | 402

cluster_13

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | rgTTAAwcATTAA |  |  | cluster1::2_motifs | PSSM | 8.56 | 202

cluster_14

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | gGGGrawTyCCC |  |  | cluster1::2_motifs | PSSM | 8.05 | 201

cluster_15

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | cyTGGCwsscwGCCAr |  |  | cluster1::2_motifs | PSSM | 9.57 | 201

cluster_16

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | symbrsyGCCmyCTrsTGGcmr |  |  | cluster1::2_motifs | PSSM | 12.46 | 201

cluster_17

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | ---syTGrCAr- |  |  | cluster1::2_motifs | PSSM | 4.71 | 201
Node 2 | --rgcTGwCAvb |  |  | cluster1::2_motifs | PSSM | 5.56 | 201
Node 3 | -aAgGTGybAa- |  |  | cluster1::2_motifs | PSSM | 5.72 | 200
Node 4 | --rsyTGwCArb |  |  | cluster1::4_motifs | PSSM | 5.07 | 401
Node 5 | rswgyTGwCArs |  |  | cluster1::5_motifs | PSSM | 5.50 | 501
Node 6 | rragsTGwCArs |  |  | cluster1::7_motifs | PSSM | 4.68 | 701

cluster_18

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | -rTTrygyAAc |  |  | cluster1::2_motifs | PSSM | 6.77 | 200
Node 2 | drTkdyGCAAc |  |  | cluster1::3_motifs | PSSM | 6.70 | 301

cluster_19

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | yyAACbGyyr |  |  | cluster1::2_motifs | PSSM | 6.78 | 201

cluster_20

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | TrTTTrCwTww |  |  | cluster1::2_motifs | PSSM | 8.14 | 200

cluster_21

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Node 1 | AGkAARCAgmTG |  |  | cluster1::2_motifs | PSSM | 11.14 | 201

cluster_22

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | TTCAAAWTAAAAGTC |  |  | cluster1 : 1 motif | PSSM | 8.57 | 101

cluster_23

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | ATGCATWATGCATRW |  |  | cluster1 : 1 motif | PSSM | 16.37 | 100

cluster_24

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | CCTGCTGAGH |  |  | cluster1 : 1 motif | PSSM | 8.59 | 100

cluster_25

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | SCCTSAGGSCAW |  |  | cluster1 : 1 motif | PSSM | 8.56 | 100

cluster_26

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | GTCACGCTCSCTGM |  |  | cluster1 : 1 motif | PSSM | 10.65 | 101

cluster_27

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | TWGHWACAWTGTWDC |  |  | cluster1 : 1 motif | PSSM | 7.20 | 101

cluster_28

## Branch Motifs
Node | Consensus | Logo | Logo (Reverse) | Collections | Matrix (Transfac format) | IC | Nb sites
--- | --- | --- | --- | --- | --- | --- | ---
Singleton | CRGCTGBNGNSNNSAGATAA |  |  | cluster1 : 1 motif | PSSM | 10.75 | 101

- Each cluster has a different color.
- Click on the upper buttons to display separately the information of each cluster.
- Click on the circles at each tree to display its corresponding merged motifs.

### Definitions

- Logo tree.
  This results shows the hierarchical tree with its logo alignment of one cluster.
  The logos are shown in Forward (left logo) and Reverse (right logo) orientation.
- Branch-motifs.
  On the trees are displayed the branch number that is the number in which the motifs were incorporated in the tree.
  The Branch-Motifs table shows the logo in both orientations and the link to the file in TRANSFAC format with the branch-motif.

Individual Motif View ## Individual Motif View
Motif id | Motif name | Cluster | Collection | Width | IC | Number of sites | Consensus | Consensus (Rev) | Logo | Logo (Rev)
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
cluster1_m107_homer_107.GTCACGTGGT | homer_107.GTCACGTGGT | cluster_2 | cluster1 | 13 | 6.72 | 101 | ++rtCACRTGgy+ | +RCCAYGTGAY++ |  |
cluster1_m104_homer_104.SVYTTCCNGGAARB | homer_104.SVYTTCCNGGAARB | cluster_4 | cluster1 | 16 | 8.38 | 100 | RYTTCCWGGAARYS++ | ++sryTTCCwGGAAry |  |
cluster1_m151_homer_151.VCCACGTG | homer_151.VCCACGTG | cluster_2 | cluster1 | 13 | 7.52 | 101 | ++CACGTGGY+++ | +++rcCACGTG++ |  |
cluster1_m43_homer_43.NRRTGACGTCAT | homer_43.NRRTGACGTCAT | cluster_5 | cluster1 | 15 | 5.48 | 101 | +++sgrTGAcgTCAy | RTGACGTCAYCS+++ |  |
cluster1_m137_homer_137.TRTTTACTTW | homer_137.TRTTTACTTW | cluster_20 | cluster1 | 11 | 7.48 | 101 | TrTTTrCyyw+ | +WRRGYAAAYA |  |
cluster1_m10_homer_10.ANCAGGAAGT | homer_10.ANCAGGAAGT | cluster_4 | cluster1 | 16 | 8.99 | 100 | +++AmvAGGAAGT+++ | +++ACTTCCTBKT+++ |  |
cluster1_m74_homer_74.YGGCCCCGCCCC | homer_74.YGGCCCCGCCCC | cluster_7 | cluster1 | 16 | 9.50 | 100 | yrGyCCCGCCCc++++ | ++++GGGGCGGGRCYR |  |
cluster1_m97_homer_97.GGCMATGAAA | homer_97.GGCMATGAAA | cluster_6 | cluster1 | 13 | 6.18 | 100 | +++TTTYATKRSC | gsymATrAAa+++ |  |
cluster1_m144_homer_144.CTTCCGGGAA | homer_144.CTTCCGGGAA | cluster_4 | cluster1 | 16 | 6.73 | 101 | ++TTCCCGGAAG++++ | ++++cTTCCgGGAA++ |  |
cluster1_m17_homer_17.ASWTCCTGBT | homer_17.ASWTCCTGBT | cluster_4 | cluster1 | 16 | 8.32 | 101 | +++WVCMGGAWSY+++ | +++rswTCCkGbw+++ |  |
cluster1_m93_homer_93.GGGGGAATCCCC | homer_93.GGGGGAATCCCC | cluster_14 | cluster1 | 12 | 10.34 | 100 | GGGGGAATCCCC | GGGGATTCCCCC |  |
cluster1_m86_homer_86.NWAACCACADNN | homer_86.NWAACCACADNN | cluster_9 | cluster1 | 12 | 8.01 | 100 | KTYTGTGGTTWK | mwaACCACAram |  |
cluster1_m125_homer_125.ACTGAAACCA | homer_125.ACTGAAACCA | cluster_10 | cluster1 | 18 | 5.97 | 100 | YRSTTTCRGT++++++++ | ++++++++acyGAAASyr |  |
cluster1_m47_homer_47.DGGGYGKGGC | homer_47.DGGGYGKGGC | cluster_7 | cluster1 | 16 | 8.26 | 101 | ++GCCMCRCCCW++++ | ++++wGGGyGkGGC++ |  |
cluster1_m71_homer_71.SAAACCACAG | homer_71.SAAACCACAG | cluster_9 | cluster1 | 12 | 9.30 | 101 | YTGTGGTTWS++ | ++swAACCACAr |  |
cluster1_m20_homer_20.AVCCGGAAGT | homer_20.AVCCGGAAGT | cluster_4 | cluster1 | 16 | 7.73 | 101 | +++avCCGGAAGt+++ | +++ACTTCCGGBT+++ |  |
cluster1_m134_homer_134.YTGWCADY | homer_134.YTGWCADY | cluster_17 | cluster1 | 12 | 4.18 | 101 | +++GMTGWCAR+ | +yTGwCAkc+++ |  |
cluster1_m40_homer_40.RTTATGYAAB | homer_40.RTTATGYAAB | cluster_18 | cluster1 | 11 | 6.52 | 100 | +rTTATRyAAb | VTTRYATAAY+ |  |
cluster1_m121_homer_121.SCCTSAGGSCAW | homer_121.SCCTSAGGSCAW | cluster_25 | cluster1 | 12 | 8.56 | 100 | sCCYsRGGsmat | ATKSCCYSRGGS |  |
cluster1_m122_homer_122.TGCGTGGGYG | homer_122.TGCGTGGGYG | cluster_7 | cluster1 | 16 | 9.23 | 100 | ++++++CRCCCMCRCA | tGyGKGGGyG++++++ |  |
cluster1_m52_homer_52.RGCCACGDRR | homer_52.RGCCACGDRR | cluster_9 | cluster1 | 12 | 6.86 | 101 | ++YYHHGTGGCH | dgCCACddrr++ |  |
cluster1_m49_homer_49.GCTATTTTTAGC | homer_49.GCTATTTTTAGC | cluster_8 | cluster1 | 12 | 8.59 | 101 | GCYAWAAATAGM | kCTATTTwTrGc |  |
cluster1_m32_homer_32.SAGATAAGRV | homer_32.SAGATAAGRV | cluster_1 | cluster1 | 12 | 9.06 | 100 | +BYCTTATCWS+ | +sWGATAAGrv+ |  |
cluster1_m84_homer_84.GHCACGTG | homer_84.GHCACGTG | cluster_2 | cluster1 | 13 | 7.09 | 101 | ++gwCACGTG+++ | +++CACGTGWC++ |  |
cluster1_m109_homer_109.VGGGRATTYCCC | homer_109.VGGGRATTYCCC | cluster_14 | cluster1 | 12 | 7.51 | 101 | rGGGrawtyCCC | GGGRAWTYCCCY |  |
cluster1_m73_homer_73.SGTCACGTGR | homer_73.SGTCACGTGR | cluster_2 | cluster1 | 13 | 8.81 | 100 | +sgyCACGTGr++ | ++YCACGTGRCS+ |  |
cluster1_m88_homer_88.GGTGYTGACAGS | homer_88.GGTGYTGACAGS | cluster_17 | cluster1 | 12 | 8.96 | 101 | SCTGTCARCASY | rsTGyTGACAgs |  |
cluster1_m111_homer_111.NGYCATAAAWCH | homer_111.NGYCATAAAWCH | cluster_6 | cluster1 | 13 | 6.07 | 100 | +KGWTTTAYGRCS | sgycrTAAAwcm+ |  |
cluster1_m28_homer_28.VVATGACGTCAT | homer_28.VVATGACGTCAT | cluster_5 | cluster1 | 15 | 8.30 | 101 | +++ATKAYRTCAYYT | arrTGAyrTMAt+++ |  |
cluster1_m136_homer_136.VNAGGKCAAAGGTCA | homer_136.VNAGGKCAAAGGTCA | cluster_12 | cluster1 | 15 | 7.57 | 101 | TGACCTYTGMCCYWK | mwrGGkcARAGGtcA |  |
cluster1_m90_homer_90.VNRVCAGCTGGY | homer_90.VNRVCAGCTGGY | cluster_2 | cluster1 | 13 | 8.63 | 101 | rkrvCAKmTGsy+ | +RSCAKMTGBYMY |  |
cluster1_m150_homer_150.CRGCTGBNGNSNNSAGATAA | homer_150.CRGCTGBNGNSNNSAGATAA | cluster_28 | cluster1 | 20 | 10.75 | 101 | crbCTGbkssssrswGATAA | TTATCWSYSSSSMVCAGVYG |  |
cluster1_m114_homer_114.RCCACGTGGYYN | homer_114.RCCACGTGGYYN | cluster_2 | cluster1 | 13 | 8.05 | 100 | DRRMCACGTGKY+ | +rmCACGTGkyyh |  |
cluster1_m89_homer_89.RCCATMTGTT | homer_89.RCCATMTGTT | cluster_2 | cluster1 | 13 | 6.06 | 100 | ++RMCAKMTGGY+ | +rcCAkmTGky++ |  |
cluster1_m7_homer_7.ACAGGAAGTG | homer_7.ACAGGAAGTG | cluster_4 | cluster1 | 16 | 8.80 | 101 | ++++aCAGGAAryr++ | ++YRYTTCCTGT++++ |  |
cluster1_m31_homer_31.AACCGGAAGT | homer_31.AACCGGAAGT | cluster_4 | cluster1 | 16 | 9.19 | 101 | +++arCCGGAAGT+++ | +++ACTTCCGGYT+++ |  |
cluster1_m112_homer_112.GTCACGCTCSCTGM | homer_112.GTCACGCTCSCTGM | cluster_26 | cluster1 | 14 | 10.65 | 101 | GTCACGstcssTGm | KCASSGASCGTGAC |  |
cluster1_m80_homer_80.AGATAAGANN | homer_80.AGATAAGANN | cluster_1 | cluster1 | 12 | 7.54 | 101 | KATYTTATCW++ | ++WGATAAratm |  |
cluster1_m2_homer_2.NNAYTTCCTGHN | homer_2.NNAYTTCCTGHN | cluster_4 | cluster1 | 16 | 6.22 | 101 | +++VRCMGGAWRYRS+ | +syryWTCCkgyb+++ |  |
cluster1_m44_homer_44.VTTACGTAAYNNNNN | homer_44.VTTACGTAAYNNNNN | cluster_5 | cluster1 | 15 | 6.31 | 101 | YARHKRTKRYRYMAY | rTKryryMAymdytr |  |
cluster1_m77_homer_77.GCCACACCCA | homer_77.GCCACACCCA | cluster_7 | cluster1 | 16 | 11.40 | 100 | ++GCCACACCCA++++ | ++++TGGGTGTGGC++ |  |
cluster1_m103_homer_103.GGGGGGGG | homer_103.GGGGGGGG | cluster_7 | cluster1 | 16 | 7.95 | 100 | +++CCCCCCCC+++++ | +++++GGGgGGGG+++ |  |
cluster1_m128_homer_128.AGGTGTCA | homer_128.AGGTGTCA | cluster_17 | cluster1 | 12 | 5.91 | 101 | ++AGGTGtyA++ | ++TRACACCT++ |  |
cluster1_m148_homer_148.GGTTGCCATGGCAA | homer_148.GGTTGCCATGGCAA | cluster_11 | cluster1 | 16 | 10.85 | 100 | +TTGCCATGGCAACM+ | +kGTTgCCATGGcAA+ |  |
cluster1_m26_homer_26.RATGASTCAT | homer_26.RATGASTCAT | cluster_3 | cluster1 | 16 | 6.06 | 101 | +++++raTGAsTCAy+ | +RTGASTCATY+++++ |  |
cluster1_m76_homer_76.RGGGGGCGGGGC | homer_76.RGGGGGCGGGGC | cluster_7 | cluster1 | 16 | 9.23 | 101 | ++GYCMCRCCCMYY++ | ++rrkGGGyGkGrC++ |  |
cluster1_m145_homer_145.VGCTGWCAVB | homer_145.VGCTGWCAVB | cluster_17 | cluster1 | 12 | 7.36 | 100 | ++rscTGwCAvb | VBTGWCAGSY++ |  |
cluster1_m30_homer_30.VTGACTCATC | homer_30.VTGACTCATC | cluster_3 | cluster1 | 16 | 8.59 | 101 | +++++GMTGASTCAB+ | +vTGAsTCAkc+++++ |  |
cluster1_m81_homer_81.NWGGGTGTGGCY | homer_81.NWGGGTGTGGCY | cluster_7 | cluster1 | 16 | 10.79 | 101 | +RRCCACACCCWK+++ | +++mwGGGTGTGGyy+ |  |
cluster1_m65_homer_65.GCYCCGCCCCYH | homer_65.GCYCCGCCCCYH | cluster_7 | cluster1 | 16 | 7.87 | 101 | ++gcyCCGCCymyw++ | ++WRKRGGCGGRGC++ |  |
cluster1_m115_homer_115.GGCCCCGCCCCC | homer_115.GGCCCCGCCCCC | cluster_7 | cluster1 | 16 | 11.85 | 100 | +gGCCCCGCCCCc+++ | +++GGGGGCGGGGCC+ |  |
cluster1_m67_homer_67.GCCACRCCCACY | homer_67.GCCACRCCCACY | cluster_7 | cluster1 | 16 | 11.72 | 100 | ++GCCACrCCCMCy++ | ++RGKGGGYGTGGC++ |  |
cluster1_m96_homer_96.CCTGCTGAGH | homer_96.CCTGCTGAGH | cluster_24 | cluster1 | 10 | 8.59 | 100 | CmyGCTGwKh | DMWCAGCRKG |  |
cluster1_m130_homer_130.CMATYAATCW | homer_130.CMATYAATCW | cluster_6 | cluster1 | 13 | 5.23 | 100 | +WGATTRATKG++ | ++cmATyAaTcw+ |  |
cluster1_m119_homer_119.VGCCATAAAA | homer_119.VGCCATAAAA | cluster_6 | cluster1 | 13 | 5.08 | 101 | +++TTTTAYKRSY | rsymrTaAAa+++ |  |
cluster1_m46_homer_46.GATGASTCATCN | homer_46.GATGASTCATCN | cluster_3 | cluster1 | 16 | 8.98 | 100 | ++++GGRTGASTCAYC | grTGAsTCAycc++++ |  |
cluster1_m57_homer_57.ATTGCGCAAC | homer_57.ATTGCGCAAC | cluster_18 | cluster1 | 11 | 8.58 | 100 | +ATTGcgCAAc | GTTGCGCAAT+ |  |
cluster1_m59_homer_59.RGKGGGCGKGGC | homer_59.RGKGGGCGKGGC | cluster_7 | cluster1 | 16 | 8.72 | 101 | ++GCCMCGCCCMCY++ | ++rGkGGGcGkGgc++ |  |
cluster1_m141_homer_141.YCTTTGTTCC | homer_141.YCTTTGTTCC | cluster_12 | cluster1 | 15 | 9.45 | 101 | +++GGRACAAWGR++ | ++yCWTTGTyCc+++ |  |
cluster1_m34_homer_34.NGRTGACGTCAY | homer_34.NGRTGACGTCAY | cluster_5 | cluster1 | 15 | 6.45 | 101 | +++sgrTGAcgTCAy | RTGACGTCAYCS+++ |  |
cluster1_m98_homer_98.CNNBRGCGCCCCCTGSTGGC | homer_98.CNNBRGCGCCCCCTGSTGGC | cluster_16 | cluster1 | 22 | 11.60 | 101 | syvbrsyGCCcYCTrstGGc++ | ++GCCASYAGRGGGCRSYVBRS |  |
cluster1_m36_homer_36.HACTTCCGGY | homer_36.HACTTCCGGY | cluster_4 | cluster1 | 16 | 6.15 | 100 | ++++RCCGGAARYR++ | ++yryTTCCGgy++++ |  |
cluster1_m133_homer_133.NRBCARRGGTCA | homer_133.NRBCARRGGTCA | cluster_12 | cluster1 | 15 | 7.39 | 100 | TGACCYYTGMYY+++ | +++rrkcarrGGTCA |  |
cluster1_m22_homer_22.NNATGASTCATH | homer_22.NNATGASTCATH | cluster_3 | cluster1 | 16 | 6.69 | 101 | ++++krrTGAsTCAyc | GRTGASTCAYYM++++ |  |
cluster1_m24_homer_24.NRYTTCCGGY | homer_24.NRYTTCCGGY | cluster_4 | cluster1 | 16 | 6.62 | 101 | ++++ACCGGAARYR++ | ++yryTTCCGgt++++ |  |
cluster1_m35_homer_35.AGTTTCAKTTTC | homer_35.AGTTTCAKTTTC | cluster_10 | cluster1 | 18 | 8.69 | 100 | +rgTTTCakTTyy+++++ | +++++RRAAMTGAAACY+ |  |
cluster1_m124_homer_124.VVCCACGTGG | homer_124.VVCCACGTGG | cluster_2 | cluster1 | 13 | 8.41 | 101 | +rrsCACGTGs++ | ++SCACGTGSYY+ |  |
cluster1_m142_homer_142.NATTTCCNGGAAAT | homer_142.NATTTCCNGGAAAT | cluster_4 | cluster1 | 16 | 9.32 | 101 | ATTTCYWRGAAATS++ | ++satTTCYwRGAAat |  |
cluster1_m42_homer_42.ATGACGTCATCY | homer_42.ATGACGTCATCY | cluster_5 | cluster1 | 15 | 9.90 | 100 | +++GGRTGACGTCAY | rTGAcgTCAycc+++ |  |
cluster1_m120_homer_120.ATGCATWATGCATRW | homer_120.ATGCATWATGCATRW | cluster_23 | cluster1 | 15 | 16.37 | 100 | ATGMATwATkCATrw | WYATGMATWATKCAT |  |
cluster1_m99_homer_99.NNVVCAGCTGBN | homer_99.NNVVCAGCTGBN | cluster_2 | cluster1 | 13 | 4.53 | 101 | rbvvCAGcTGby+ | +RVCAGCTGBBVY |  |
cluster1_m63_homer_63.RCAGGATGTGGT | homer_63.RCAGGATGTGGT | cluster_4 | cluster1 | 16 | 12.33 | 101 | ++++MCCACWTCCTSY | rsAGGAwGTGGk++++ |  |
cluster1_m6_homer_6.AACCGGAAGT | homer_6.AACCGGAAGT | cluster_4 | cluster1 | 16 | 6.92 | 101 | +++aaCmGGAAGt+++ | +++ACTTCCKGTT+++ |  |
cluster1_m78_homer_78.NYTTCCWGGAAR | homer_78.NYTTCCWGGAAR | cluster_4 | cluster1 | 16 | 9.83 | 101 | YTTCCWGGAARY++++ | ++++ryTTCCwGGAAr |  |
cluster1_m9_homer_9.AVCAGGAAGT | homer_9.AVCAGGAAGT | cluster_4 | cluster1 | 16 | 8.05 | 100 | +++acvmGGAARt+++ | +++AYTTCCKBGT+++ |  |
cluster1_m66_homer_66.GNCACGTG | homer_66.GNCACGTG | cluster_2 | cluster1 | 13 | 7.21 | 101 | ++gtCACGTG+++ | +++CACGTGAC++ |  |
cluster1_m146_homer_146.TGACCTTTGCCCCA | homer_146.TGACCTTTGCCCCA | cluster_12 | cluster1 | 15 | 9.01 | 101 | TGaCCTyTGcCCya+ | +TRGGGCARAGGTCA |  |
cluster1_m118_homer_118.GTTGCCATGGCAACM | homer_118.GTTGCCATGGCAACM | cluster_11 | cluster1 | 16 | 12.38 | 101 | GTTgCCATGGcAACm+ | +KGTTGCCATGGCAAC |  |
cluster1_m70_homer_70.CCCCTCCCCCAC | homer_70.CCCCTCCCCCAC | cluster_7 | cluster1 | 16 | 11.48 | 100 | +++CCCCTCCCCCac+ | +GTGGGGGAGGGG+++ |  |
cluster1_m15_homer_15.AAAGRGGAAGTG | homer_15.AAAGRGGAAGTG | cluster_4 | cluster1 | 16 | 8.91 | 100 | ++CASTTCCBYTTT++ | ++aAArvGGAAsTG++ |  |
cluster1_m1_homer_1.ACAGGAAGTG | homer_1.ACAGGAAGTG | cluster_4 | cluster1 | 16 | 9.14 | 100 | ++++rCMGGAAGTg++ | ++CACTTCCKGY++++ |  |
cluster1_m29_homer_29.GGATGACTCATC | homer_29.GGATGACTCATC | cluster_3 | cluster1 | 16 | 9.46 | 101 | ++++ggaTGAsTCAtc | GATGASTCATCC++++ |  |
cluster1_m37_homer_37.NATGASTCABNN | homer_37.NATGASTCABNN | cluster_3 | cluster1 | 16 | 4.88 | 101 | ++++SRVTGASTCAYY | rrTGAsTCAbys++++ |  |
cluster1_m25_homer_25.MGGAAGTGAAAC | homer_25.MGGAAGTGAAAC | cluster_10 | cluster1 | 18 | 9.16 | 101 | ++STTTCACTTCYK++++ | ++++mRGAAgTGAAAs++ |  |
cluster1_m102_homer_102.GSCTWTAAAAGG | homer_102.GSCTWTAAAAGG | cluster_6 | cluster1 | 13 | 8.13 | 101 | +SCTTWTAWRGSS | ssCYwTAWAAGs+ |  |
cluster1_m27_homer_27.DATGASTCAT | homer_27.DATGASTCAT | cluster_3 | cluster1 | 16 | 8.40 | 101 | +++++daTGAsTCAt+ | +ATGASTCATH+++++ |  |
cluster1_m55_homer_55.AAACCACARM | homer_55.AAACCACARM | cluster_9 | cluster1 | 12 | 8.69 | 101 | +aAACCACArm+ | +KYTGTGGTTT+ |  |
cluster1_m135_homer_135.GGTTAAWCATTAA | homer_135.GGTTAAWCATTAA | cluster_13 | cluster1 | 13 | 9.11 | 101 | rGTTAAwcATTAA | TTAATGWTTAACY |  |
cluster1_m51_homer_51.RTCATGTGAC | homer_51.RTCATGTGAC | cluster_2 | cluster1 | 13 | 6.73 | 101 | ++GTCACRTGAY+ | +rtCayGTGAC++ |  |
cluster1_m123_homer_123.GTTAATNATTAA | homer_123.GTTAATNATTAA | cluster_13 | cluster1 | 13 | 8.32 | 101 | +gTTAATsATTAA | TTAATSATTAAC+ |  |
cluster1_m108_homer_108.SMCATCTGKH | homer_108.SMCATCTGKH | cluster_2 | cluster1 | 13 | 7.38 | 100 | ++WVCAKMTGKS+ | +smCAkmTGbw++ |  |
cluster1_m16_homer_16.VACAGGAAAT | homer_16.VACAGGAAAT | cluster_4 | cluster1 | 16 | 9.84 | 101 | +++aaCAGGAArY+++ | +++RYTTCCTGTT+++ |  |
cluster1_m149_homer_149.TGCTGACTCA | homer_149.TGCTGACTCA | cluster_3 | cluster1 | 16 | 8.32 | 100 | ++++TGCTGACtca++ | ++TGAGTCAGCA++++ |  |
cluster1_m83_homer_83.DRTGTTGCAA | homer_83.DRTGTTGCAA | cluster_18 | cluster1 | 11 | 8.99 | 101 | TTGCAWCAYH+ | +drTGwTGCAA |  |
cluster1_m131_homer_131.ATTTGCATAW | homer_131.ATTTGCATAW | cluster_20 | cluster1 | 11 | 10.17 | 100 | +ATTTGCATAw | WTATGCAAAT+ |  |
cluster1_m69_homer_69.MKGGGYGTGGCC | homer_69.MKGGGYGTGGCC | cluster_7 | cluster1 | 16 | 10.29 | 101 | +RGCCMCRCCCMK+++ | +++mkGGGyGkGGCy+ |  |
cluster1_m143_homer_143.GGCVGTTR | homer_143.GGCVGTTR | cluster_19 | cluster1 | 10 | 7.90 | 100 | +YAACBGCC+ | +GgCvGTTr+ |  |
cluster1_m12_homer_12.MACAGGAAGT | homer_12.MACAGGAAGT | cluster_4 | cluster1 | 16 | 9.84 | 100 | +++RYTTCCTGTK+++ | +++mACAGGAARY+++ |  |
cluster1_m68_homer_68.ATGACGTCATCN | homer_68.ATGACGTCATCN | cluster_5 | cluster1 | 15 | 10.88 | 101 | +++BGRTGACGTCAY | rTGACGTCAycv+++ |  |
cluster1_m82_homer_82.AGATAASR | homer_82.AGATAASR | cluster_1 | cluster1 | 12 | 6.29 | 101 | ++YSTTATCW++ | ++wGATAAsr++ |  |
cluster1_m105_homer_105.SCCTAGCAACAG | homer_105.SCCTAGCAACAG | cluster_11 | cluster1 | 16 | 8.58 | 100 | ++++sCmTrGyAACwg | CWGTTRCYAKGS++++ |  |
cluster1_m129_homer_129.CGGTTGCCATGGCAAC | homer_129.CGGTTGCCATGGCAAC | cluster_11 | cluster1 | 16 | 12.37 | 100 | GTTGCCATGGCAACCG | cgGTTGCCATGGCAAC |  |
cluster1_m14_homer_14.RACCGGAAGT | homer_14.RACCGGAAGT | cluster_4 | cluster1 | 16 | 5.90 | 101 | +++arCmGGAAGt+++ | +++ACTTCCKGYT+++ |  |
cluster1_m140_homer_140.NAGTTTCABTHTGACTNW | homer_140.NAGTTTCABTHTGACTNW | cluster_10 | cluster1 | 18 | 9.67 | 101 | WSASTCAWAMTGAAASYR | yrsTTTCakTwTGAsTsw |  |
cluster1_m39_homer_39.GATGACGTCA | homer_39.GATGACGTCA | cluster_5 | cluster1 | 15 | 6.26 | 101 | ++++TKACGTCAYC+ | +grTGACGTmA++++ |  |
cluster1_m23_homer_23.CYTGGCABNSTGCCAR | homer_23.CYTGGCABNSTGCCAR | cluster_15 | cluster1 | 16 | 9.50 | 101 | cyTGGCwswswGCCAr | YTGGCWSWSWGCCARG |  |
cluster1_m100_homer_100.NHAACBGYYV | homer_100.NHAACBGYYV | cluster_19 | cluster1 | 10 | 6.29 | 101 | yhAACkGyyr | YRRCMGTTDR |  |
cluster1_m138_homer_138.GCCATCTGTT | homer_138.GCCATCTGTT | cluster_2 | cluster1 | 13 | 8.88 | 101 | ++RRCAGATGGY+ | +rCCATCTGyy++ |  |
cluster1_m139_homer_139.GATGACTCAGCA | homer_139.GATGACTCAGCA | cluster_3 | cluster1 | 16 | 11.60 | 101 | ++++TGCTGAGTCATC | gATGACTCAGCA++++ |  |
cluster1_m53_homer_53.CTGTTTAC | homer_53.CTGTTTAC | cluster_21 | cluster1 | 12 | 8.16 | 101 | +GTAAACAG+++ | +++cTGTTTAC+ |  |
cluster1_m101_homer_101.TGTCANYT | homer_101.TGTCANYT | cluster_17 | cluster1 | 12 | 4.18 | 101 | ++AGHTGWCA++ | ++TGwCAdct++ |  |
cluster1_m61_homer_61.CTGGCAGSCTGCCA | homer_61.CTGGCAGSCTGCCA | cluster_15 | cluster1 | 16 | 9.88 | 101 | ++TGGCWGSCWGCCAR | yTGGCwgscwGCCA++ |  |
cluster1_m56_homer_56.TGTTKCCTAGCAACM | homer_56.TGTTKCCTAGCAACM | cluster_11 | cluster1 | 16 | 12.54 | 100 | kGTykCCTRGCAACm+ | +KGTTGCYAGGMRACM |  |
cluster1_m110_homer_110.CYHATAAAAN | homer_110.CYHATAAAAN | cluster_6 | cluster1 | 13 | 5.96 | 101 | ++DTTTYAYDRS+ | +syhrTrAAah++ |  |
cluster1_m85_homer_85.VDGGGYGGGGCY | homer_85.VDGGGYGGGGCY | cluster_7 | cluster1 | 16 | 9.26 | 101 | +RGCCMCRCCCHB+++ | +++vdGGGyGKGGCy+ |  |
cluster1_m38_homer_38.BBCTTATCTS | homer_38.BBCTTATCTS | cluster_1 | cluster1 | 12 | 8.78 | 101 | +yyCTTATCWs+ | +SWGATAAGRR+ |  |
cluster1_m48_homer_48.RGKGGGCGGAGC | homer_48.RGKGGGCGGAGC | cluster_7 | cluster1 | 16 | 10.35 | 100 | ++GCYCCGCCCMCY++ | ++rGkGGGCGGrGC++ |  |
cluster1_m5_homer_5.ATTTCCTGTN | homer_5.ATTTCCTGTN | cluster_4 | cluster1 | 16 | 9.66 | 101 | +++SRCAGGAAAT+++ | +++ATTTCCTGys+++ |  |
cluster1_m95_homer_95.DGCACACGTG | homer_95.DGCACACGTG | cluster_2 | cluster1 | 13 | 8.93 | 100 | CACRTGTGYH+++ | +++drcACAYGTG |  |
cluster1_m62_homer_62.NRGCCCCRCCCHBNN | homer_62.NRGCCCCRCCCHBNN | cluster_7 | cluster1 | 16 | 10.24 | 101 | yrrCYmCrCCChybc+ | +GVRDGGGYGKRGYYR |  |
cluster1_m19_homer_19.DATGASTCATHN | homer_19.DATGASTCATHN | cluster_3 | cluster1 | 16 | 8.94 | 101 | ++++KRRTGASTCAYY | rrTGAsTCAyym++++ |  |
cluster1_m33_homer_33.GRAASTGAAAST | homer_33.GRAASTGAAAST | cluster_10 | cluster1 | 18 | 9.41 | 100 | +ASTTTCRSTTYC+++++ | +++++GrAAsyGAAAst+ |  |
cluster1_m41_homer_41.AYAGTGCCMYCTRGTGGCCA | homer_41.AYAGTGCCMYCTRGTGGCCA | cluster_16 | cluster1 | 22 | 13.44 | 101 | ++ayrsyGCCmyCTrSTGGymr | YKRCCASYAGRKGGCRSYRT++ |  |
cluster1_m60_homer_60.DCYAAAAATAGM | homer_60.DCYAAAAATAGM | cluster_8 | cluster1 | 12 | 7.41 | 100 | dcyaaAAATAGm | KCTATTTTTRGH |  |
cluster1_m75_homer_75.AWWWTGCTGAGTCAT | homer_75.AWWWTGCTGAGTCAT | cluster_3 | cluster1 | 16 | 9.87 | 101 | ATGACTCAGCAWWWW+ | +wwwwTGCTGAGTCAT |  |
cluster1_m21_homer_21.GGAAGTGAAAST | homer_21.GGAAGTGAAAST | cluster_10 | cluster1 | 18 | 11.19 | 101 | +ASTTTCACTTCC+++++ | +++++GGAAgTGAAAst+ |  |
cluster1_m91_homer_91.CCCCTCCCCCAC | homer_91.CCCCTCCCCCAC | cluster_7 | cluster1 | 16 | 14.20 | 100 | +++CCCCTCCCCCAC+ | +GTGGGGGAGGGG+++ |  |
cluster1_m94_homer_94.GCTGTGGTTW | homer_94.GCTGTGGTTW | cluster_9 | cluster1 | 12 | 8.84 | 101 | +WAACCACAGM+ | +kcTGTGGTtw+ |  |
cluster1_m127_homer_127.AAGGTGTKAA | homer_127.AAGGTGTKAA | cluster_17 | cluster1 | 12 | 5.71 | 101 | +aaksTGykAa+ | +TTMRCASMTT+ |  |
cluster1_m54_homer_54.YCTTATCTBN | homer_54.YCTTATCTBN | cluster_1 | cluster1 | 12 | 7.07 | 101 | ++yCTTATCwsb | VSWGATAAGR++ |  |
cluster1_m50_homer_50.YTGCCAAG | homer_50.YTGCCAAG | cluster_17 | cluster1 | 12 | 7.50 | 101 | +++SYTGSCAR+ | +yTGsCArs+++ |  |
cluster1_m11_homer_11.AGAGGAAGTG | homer_11.AGAGGAAGTG | cluster_4 | cluster1 | 16 | 10.48 | 100 | ++++aGAGGAAGTG++ | ++CACTTCCTCT++++ |  |
cluster1_m4_homer_4.NRYTTCCGGH | homer_4.NRYTTCCGGH | cluster_4 | cluster1 | 16 | 4.12 | 101 | ++++RSMGGAARYG++ | ++crytTCCksy++++ |  |
cluster1_m117_homer_117.ACCATCTGTT | homer_117.ACCATCTGTT | cluster_2 | cluster1 | 13 | 8.72 | 100 | ++RRCAGATGGY+ | +rCCATCTGyy++ |  |
cluster1_m58_homer_58.TGCTGAGTCA | homer_58.TGCTGAGTCA | cluster_3 | cluster1 | 16 | 9.89 | 100 | ++++tGCTGAsTCA++ | ++TGASTCAGCA++++ |  |
cluster1_m116_homer_116.TTCAAAWTAAAAGTC | homer_116.TTCAAAWTAAAAGTC | cluster_22 | cluster1 | 15 | 8.57 | 101 | kycaamwTAAAAGyC | GRCTTTTAWKTTGRM |  |
cluster1_m64_homer_64.NBWGATAAGR | homer_64.NBWGATAAGR | cluster_1 | cluster1 | 12 | 7.48 | 100 | ++YSTTATCWSB | vswGATAAsr++ |  |
cluster1_m92_homer_92.GCTATTTTTGGM | homer_92.GCTATTTTTGGM | cluster_8 | cluster1 | 12 | 6.68 | 101 | KCYAWAAATAGM | kCTATTTwtrGm |  |
cluster1_m132_homer_132.MCAGCTGBYH | homer_132.MCAGCTGBYH | cluster_2 | cluster1 | 13 | 7.88 | 100 | +GRVCAKMTGK++ | ++mCAKmTGbyc+ |  |
cluster1_m79_homer_79.GGGGGTGTGTCC | homer_79.GGGGGTGTGTCC | cluster_7 | cluster1 | 16 | 11.27 | 101 | +GGMCACACCCCC+++ | +++GgGGGTGTGkcc+ |  |
cluster1_m45_homer_45.AGGAARCAGCTG | homer_45.AGGAARCAGCTG | cluster_21 | cluster1 | 12 | 12.19 | 101 | AGGAArCAgmTG | CAKCTGYTTCCT |  |
cluster1_m13_homer_13.ACCGGAAGTG | homer_13.ACCGGAAGTG | cluster_4 | cluster1 | 16 | 5.73 | 101 | ++++rCCGGAAGyg++ | ++CRCTTCCGGY++++ |  |
cluster1_m72_homer_72.TTTTATGGCM | homer_72.TTTTATGGCM | cluster_6 | cluster1 | 13 | 4.50 | 101 | +++tTTtAtdrsc | GSYHATAAAA+++ |  |
cluster1_m106_homer_106.KRRCAGCTGGTS | homer_106.KRRCAGCTGGTS | cluster_2 | cluster1 | 13 | 8.46 | 101 | +krrCAGmTGgtg | CACCAKCTGYYM+ |  |
cluster1_m147_homer_147.TWGHWACAWTGTWDC | homer_147.TWGHWACAWTGTWDC | cluster_27 | cluster1 | 15 | 7.20 | 101 | twGhwACWwWGTwdC | GHWACWWWGTWDCWA |  |
cluster1_m113_homer_113.NAMCAGCTGK | homer_113.NAMCAGCTGK | cluster_2 | cluster1 | 13 | 7.88 | 100 | +ramCAkmTGk++ | ++MCAKMTGKTY+ |  |
cluster1_m126_homer_126.RTGATTTATGGY | homer_126.RTGATTTATGGY | cluster_6 | cluster1 | 13 | 8.02 | 101 | rtGATTTAYkry+ | +RYMRTAAATCAY |  |
cluster1_m8_homer_8.ACTTCCKGKT | homer_8.ACTTCCKGKT | cluster_4 | cluster1 | 16 | 6.59 | 101 | +++AASMGGAAGT+++ | +++aCTTCCkstt+++ |  |
cluster1_m3_homer_3.ACVAGGAAGT | homer_3.ACVAGGAAGT | cluster_4 | cluster1 | 16 | 8.80 | 101 | +++AyvmGGAAGT+++ | +++ACTTCCKBRT+++ |  |
cluster1_m18_homer_18.NDATGASTCAYN | homer_18.NDATGASTCAYN | cluster_3 | cluster1 | 16 | 7.51 | 101 | ++++bkaTKAsTCAyc | GRTGASTMATMV++++ |  |
cluster1_m87_homer_87.VRCCACGTGG | homer_87.VRCCACGTGG | cluster_2 | cluster1 | 13 | 8.46 | 101 | +vrsCACGTGg++ | ++CCACGTGSYB+ |  |
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Heatmap View ## Heatmap View Distance table | PDF

Additional Files

## Exported files

File | Description
--- | ---
Pairwise comparison | This table shows the pairwise comparison between all the input motifs using different metrics. This is the compare-matrices result.
Matrix description | This table shows information of each input motif.
Cluster-wise Motif Files [zip] | One TRANSFAC file is generated for each cluster including all the input motifs grouped in the corresponding cluster.
Root motifs | A file with the root matrix of each cluster.
Motif collections per cluster | A tab separated file containing the counts of motif of each collection on each cluster.
Clusters | A tab separated file containing the clusters and their correspondng motifs.
Central motifs IDs | A tab separated file containing the central motif, that one who is the most similar to all the others motif in the same cluster.
Central motifs (in TRANSFAC format) | A transfac file containing the central motif, that one who is the most similar to all the others motif within the same cluster.
Input motifs | The input motifs analyzed with matrix-clustering.

- References
  1. Castro-Mondragon JA et al. RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections. doi: 10.1093/nar/gkx314; Nucleic Acids Research (2017)
  2. Last RSAT release: Nguyen NTT et al. RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Research (2018).
- Additional Information
  - Jacques van Helden course
- Contact
  - Jaime Castro-Mondragon - j.a.c.mondragon@ncmm.uio.no
  - Morgane Thomas-Chollier - mthomas@biologie.ens.fr
  - Jacques van Helden - Jacques.van-Helden@univ-amu.fr