

rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_query_matrices.homer -from homer -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed_1.tf -from tf -to transfac -prefix_id hsc_lincorr_baso -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_7_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m25_homer_25.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m29_homer_29.RGKGGGCGGAGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_ud9GPZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_mc3yBA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_TkoXJR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_txlnXh


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_nCy2G4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_iZPAzc


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_1ViZ2y


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m27_homer_27.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m25_homer_25.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m29_homer_29.RGKGGGCGGAGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m26_homer_26.AGATAASR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wvd3d7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_UFhU0h


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wCySBQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wL3iuK


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_z7rJKO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_5YRhgv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_oeAMEu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_ezUTrC


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m19_homer_19.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m32_homer_32.VTGACTCATC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m15_homer_15.TGGCAGTTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m21_homer_21.GGCVGTTR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_XWhAW7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_sWX2n4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_nqEZfq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_LYhIkQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_jxF7eV


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m30_homer_30.AWWWTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m19_homer_19.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m32_homer_32.VTGACTCATC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_fAti38


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_YPySPB


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_kuguiP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_nb_motifs_16.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_sUaDCT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m31_homer_31.CAAAGGTCAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf -from tf -to tf  -attr name cluster_6 -attr accession cluster_6 -set_attr merged_AC 'hsc_lincorr_baso:::homer_31.CAAAGGTCAG' -set_attr merged_ID 'homer_31.CAAAGGTCAG' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m20_homer_20.GCTATTTTTAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m22_homer_22.CYTGGCABNSTGCCAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf -from tf -to tf  -attr name cluster_7 -attr accession cluster_7 -set_attr merged_AC 'hsc_lincorr_baso:::homer_20.GCTATTTTTAGC' -set_attr merged_ID 'homer_20.GCTATTTTTAGC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf -from tf -to tf  -attr name cluster_8 -attr accession cluster_8 -set_attr merged_AC 'hsc_lincorr_baso:::homer_22.CYTGGCABNSTGCCAR' -set_attr merged_ID 'homer_22.CYTGGCABNSTGCCAR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html
