rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ
rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_query_matrices.homer -from homer -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed_1.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed_1.tf -from tf -to transfac -prefix_id hsc_lincorr_baso -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/hsc_lincorr_baso_input_motifs_processed.tf > /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/motif
cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering'; "
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_1_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_2_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_3_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_4_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_5_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_6_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_8_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/cluster_7_transfac_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m25_homer_25.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m29_homer_29.RGKGGGCGGAGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_ud9GPZ
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_mc3yBA
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_TkoXJR
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_txlnXh
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_nCy2G4
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_iZPAzc
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195942_1ViZ2y
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m27_homer_27.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m25_homer_25.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m29_homer_29.RGKGGGCGGAGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m26_homer_26.AGATAASR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m18_homer_18.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m23_homer_23.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m13_homer_13.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m14_homer_14.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wvd3d7
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_UFhU0h
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wCySBQ
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_wL3iuK
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195943_z7rJKO
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_5YRhgv
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_oeAMEu
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195944_ezUTrC
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m19_homer_19.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m32_homer_32.VTGACTCATC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m15_homer_15.TGGCAGTTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m21_homer_21.GGCVGTTR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_XWhAW7
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_sWX2n4
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_nqEZfq
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_LYhIkQ
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195945_jxF7eV
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m30_homer_30.AWWWTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m19_homer_19.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m32_homer_32.VTGACTCATC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m10_homer_10.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m24_homer_24.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_fAti38
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_YPySPB
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_kuguiP
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_nb_motifs_16.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/IC_test_2026-04-09.195946_sUaDCT
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m31_homer_31.CAAAGGTCAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices_temp.tf -from tf -to tf -attr name cluster_6 -attr accession cluster_6 -set_attr merged_AC 'hsc_lincorr_baso:::homer_31.CAAAGGTCAG' -set_attr merged_ID 'homer_31.CAAAGGTCAG' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_6/cluster_6_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m20_homer_20.GCTATTTTTAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/hsc_lincorr_baso_m22_homer_22.CYTGGCABNSTGCCAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices_temp.tf -from tf -to tf -attr name cluster_7 -attr accession cluster_7 -set_attr merged_AC 'hsc_lincorr_baso:::homer_20.GCTATTTTTAGC' -set_attr merged_ID 'homer_20.GCTATTTTTAGC' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices_temp.tf -from tf -to tf -attr name cluster_8 -attr accession cluster_8 -set_attr merged_AC 'hsc_lincorr_baso:::homer_22.CYTGGCABNSTGCCAR' -set_attr merged_ID 'homer_22.CYTGGCABNSTGCCAR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_7/cluster_7_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_clusters_information/cluster_8/cluster_8_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_pairwise_compa_logos
cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_logo_tree.html
cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.html
mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html
; matrix-clustering -v 1 -max_matrices 300 -matrix hsc_lincorr_baso $RSAT/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_query_matrices.homer homer -hclust_method average -calc sum -title hsc_lincorr_baso -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering
; Program version 1.05
; Number of matrices 32
; Output files
; coverage_json_folder /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_coverage_json
; internal_nodes_attributes_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/internal_nodes_attributes.tab
; summary /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_SUMMARY.html
; summary_temp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_SUMMARY_TEMP.html
; cluster_summary_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_summary_table.tab
; log /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_log.txt
; small_forest_export /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_small_forest.html
; motif_richness_tsv /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_motif_richness.tsv
; prefix /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering
; input_matrices /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf
; err_log /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_errors.txt
; motif_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data/input_motifs_processed.tf
; all_concatenated_motifs /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
; clusters_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.html
; cluster_IDs_names /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_cluster_IDs.txt
; dynamic_coverage_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_dynamic_coverage_heatmap.html
; radial_tree /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_radial_tree.html
; temp_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary.html
; heatmap_coverage_attributes /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/convergency_heatmap_attributes.tab
; central_motifs_IDs_temp /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_central_motifs_IDs_temporal.tab
; clusters_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters.tab
; reference_compa /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
; small_logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_portable_logo_tree.html
; temp_html_3 /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_3.html
; int_align /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/intermediate_alignments.tab
; alignment_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.html
; radial_tree_template /var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
; central_motifs /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_central_motifs_IDs.tab
; temp_html_2 /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_temporary_2.html
; root_motifs /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_cluster_root_motifs.tf
; archive /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_archive.zip
; percent_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_summary_percent_table.tab
; motif_richness_barplot_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_motif_richness_barplot.html
; reference_compa_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/Root_vs_reference_collection_compa.html
; html_index /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/index.html
; Rlog /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_Rlog.txt
; distance_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.tab
; pairwise_compa /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa.tab
; clusters_table_motif_names /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.tab
; matrix_descriptions /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
; clusters_table_motif_names_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_motif_names.html
; dynamic_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_dynamic_heatmap.html
; consensus_cladogram_json /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_trees/tree.json
; coverage_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
; heatmap_jpg /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_figures/heatmap.jpg
; heatmap_collections_d3 /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/collection_heatmap_tab.tsv
; central_motifs_tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_central_motifs_transfac.tf
; alignment_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab
; matrix_descriptions_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
; hexa_colors /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_hexa_colors.txt
; nb_clusters_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/number_of_clusters.tab
; heatmap_coverage_d3 /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/convergency_heatmap_tab.tsv
; heatmap_pdf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_figures/heatmap.pdf
; ref_collection_tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_reference_collection.tf
; logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_logo_tree.html
; heatmap_collections_attributes /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/collection_heatmap_order.tab
; distance_table_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/distance_table.html
; pairwise_compa_html /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_html/pairwise_compa.html
; root_motifs_table /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_root_motifs_table.tab
; Directories
; data /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_data
; output /var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ
; Host name rsat
; Job started 2026-04-09.195933
; Job done 2026-04-09.195950
; Seconds 0.79
; user 0.79
; system 0.3
; cuser 29.25
; csystem 7.35