/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/matrix-clustering_2026-04-09.195932_t13RUQ/matrix-clustering_tables/alignment_table.tab


id name cluster strand offset_up offset_down width aligned_consensus aligned_consensus_rc
hsc_lincorr_baso_m18_homer_18.SAGATAAGRV homer_18.SAGATAAGRV cluster_1 D 1 0 11 +sWGATAAGrv BYCTTATCWS+
hsc_lincorr_baso_m23_homer_23.BBCTTATCTS homer_23.BBCTTATCTS cluster_1 R 1 0 11 +SWGATAAGRR yyCTTATCWs+
hsc_lincorr_baso_m13_homer_13.YCTTATCTBN homer_13.YCTTATCTBN cluster_1 R 0 1 11 VSWGATAAGR+ +yCTTATCwsb
hsc_lincorr_baso_m14_homer_14.NBWGATAAGR homer_14.NBWGATAAGR cluster_1 D 0 1 11 vswGATAAsr+ +YSTTATCWSB
hsc_lincorr_baso_m26_homer_26.AGATAASR homer_26.AGATAASR cluster_1 D 2 1 11 ++YSTTATCW+ +wGATAAsr++
hsc_lincorr_baso_m3_homer_3.AACCGGAAGT homer_3.AACCGGAAGT cluster_2 D 0 2 12 aaCmGGAAGt++ ++ACTTCCKGTT
hsc_lincorr_baso_m5_homer_5.RACCGGAAGT homer_5.RACCGGAAGT cluster_2 D 0 2 12 arCmGGAAGt++ ++ACTTCCKGYT
hsc_lincorr_baso_m11_homer_11.ACTTCCKGKT homer_11.ACTTCCKGKT cluster_2 R 0 2 12 AASMGGAAGT++ ++aCTTCCkstt
hsc_lincorr_baso_m28_homer_28.AVCAGGAAGT homer_28.AVCAGGAAGT cluster_2 D 0 2 12 acvmGGAARt++ ++AYTTCCKBGT
hsc_lincorr_baso_m16_homer_16.AVCCGGAAGT homer_16.AVCCGGAAGT cluster_2 D 0 2 12 ACTTCCGGBT++ ++avCCGGAAGt
hsc_lincorr_baso_m1_homer_1.ATTTCCTGTN homer_1.ATTTCCTGTN cluster_2 R 0 2 12 SRCAGGAAAT++ ++ATTTCCTGys
hsc_lincorr_baso_m24_homer_24.VACAGGAAAT homer_24.VACAGGAAAT cluster_2 D 0 2 12 aaCAGGAArY++ ++RYTTCCTGTT
hsc_lincorr_baso_m12_homer_12.ACVAGGAAGT homer_12.ACVAGGAAGT cluster_2 D 0 2 12 AyvmGGAAGT++ ++ACTTCCKBRT
hsc_lincorr_baso_m17_homer_17.ANCAGGAAGT homer_17.ANCAGGAAGT cluster_2 D 0 2 12 AmvAGGAAGT++ ++ACTTCCTBKT
hsc_lincorr_baso_m4_homer_4.ACAGGAAGTG homer_4.ACAGGAAGTG cluster_2 D 1 1 12 +rCMGGAAGTg+ +CACTTCCKGY+
hsc_lincorr_baso_m8_homer_8.ACAGGAAGTG homer_8.ACAGGAAGTG cluster_2 D 1 1 12 +aCAGGAAryr+ +YRYTTCCTGT+
hsc_lincorr_baso_m2_homer_2.ACCGGAAGTG homer_2.ACCGGAAGTG cluster_2 D 1 1 12 +rCCGGAAGyg+ +CRCTTCCGGY+
hsc_lincorr_baso_m9_homer_9.NRYTTCCGGH homer_9.NRYTTCCGGH cluster_2 R 1 1 12 +RSMGGAARYG+ +crytTCCksy+
hsc_lincorr_baso_m10_homer_10.MACAGGAAGT homer_10.MACAGGAAGT cluster_2 D 0 2 12 RYTTCCTGTK++ ++mACAGGAARY
hsc_lincorr_baso_m6_homer_6.AGAGGAAGTG homer_6.AGAGGAAGTG cluster_2 D 1 1 12 +aGAGGAAGTG+ +CACTTCCTCT+
hsc_lincorr_baso_m7_homer_7.NNAYTTCCTGHN homer_7.NNAYTTCCTGHN cluster_2 R 0 0 12 VRCMGGAWRYRS syryWTCCkgyb
hsc_lincorr_baso_m25_homer_25.RGKGGGCGKGGC homer_25.RGKGGGCGKGGC cluster_3 D 0 2 14 rGkGGGcGkGgc++ ++GCCMCGCCCMCY
hsc_lincorr_baso_m29_homer_29.RGKGGGCGGAGC homer_29.RGKGGGCGGAGC cluster_3 D 0 2 14 rGkGGGCGGrGC++ ++GCYCCGCCCMCY
hsc_lincorr_baso_m27_homer_27.YGGCCCCGCCCC homer_27.YGGCCCCGCCCC cluster_3 R 2 0 14 ++GGGGCGGGRCYR yrGyCCCGCCCc++
hsc_lincorr_baso_m19_homer_19.TGCTGAGTCA homer_19.TGCTGAGTCA cluster_4 D 4 1 15 ++++tGCTGAsTCA+ +TGASTCAGCA++++
hsc_lincorr_baso_m32_homer_32.VTGACTCATC homer_32.VTGACTCATC cluster_4 R 5 0 15 +++++GMTGASTCAB vTGAsTCAkc+++++
hsc_lincorr_baso_m30_homer_30.AWWWTGCTGAGTCAT homer_30.AWWWTGCTGAGTCAT cluster_4 D 0 0 15 ATGACTCAGCAWWWW wwwwTGCTGAGTCAT
hsc_lincorr_baso_m15_homer_15.TGGCAGTTGG homer_15.TGGCAGTTGG cluster_5 D 0 0 10 tGrCaGTTrg CYAACTGYCA
hsc_lincorr_baso_m21_homer_21.GGCVGTTR homer_21.GGCVGTTR cluster_5 D 1 1 10 +GgCvGTTr+ +YAACBGCC+
hsc_lincorr_baso_m31_homer_31.CAAAGGTCAG homer_31.CAAAGGTCAG cluster_6 D 0 0 10 CmRAGGtCAs STGACCTYKG
hsc_lincorr_baso_m20_homer_20.GCTATTTTTAGC homer_20.GCTATTTTTAGC cluster_7 D 0 0 12 kCTATTTwTrGc GCYAWAAATAGM
hsc_lincorr_baso_m22_homer_22.CYTGGCABNSTGCCAR homer_22.CYTGGCABNSTGCCAR cluster_8 D 0 0 16 cyTGGCwswswGCCAr YTGGCWSWSWGCCARG