; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	31	21	7	12	0	0	0	0	4	76	38	21	34	24
c	15	22	14	1	0	4	2	0	74	3	12	9	6	15
g	11	23	15	71	80	78	0	85	0	3	21	14	11	20
t	28	19	49	1	5	3	83	0	7	3	14	41	34	26
//
; Sites	85
>site_0
CGGGGGTGCAATTT
>site_1
ATTGGCTGCACACC
>site_2
ACCGGGTGCAATTT
>site_3
AAAGGGTGCAATTC
>site_4
GCTGTGTGCATATG
>site_5
CATGGTTGCAAAAC
>site_6
TCTAGGTGCATTCC
>site_7
CCGGGGTGCAATTC
>site_8
GGTGGGTGAAAGAA
>site_9
AATGGGTGCAAACG
>site_10
CCTGGGTGCATTTT
>site_11
TTGAGGTGCAATGG
>site_12
CTGGGGTGCACTAC
>site_13
AGTAGGTGCATAGA
>site_14
CCCGGGTGCAAATT
>site_15
TGTGGTTGCACGGC
>site_16
AAAGTGTGCAATTG
>site_17
AACGGGTGCAGTTA
>site_18
TCGGGGTGCACATA
>site_19
TCCGGGTGCACCAT
>site_20
GATTGGTGCATCAG
>site_21
CTCGGGTGCACTTT
>site_22
ATTGGGTGCAGTAG
>site_23
TCAGGGTGCAGCTT
>site_24
ACGGGGTGCGATTT
>site_25
AGAGGGTGCAGAGC
>site_26
GCTGGGTGAAGTGG
>site_27
CGTGGGTGCACTAC
>site_28
TTTGGGTGCACAAA
>site_29
GCTGGGTGTAGTAA
>site_30
AATGGGTGCAAAGA
>site_31
CACAGGTGCAATTA
>site_32
TATGGCTGCAGAGA
>site_33
GTCGGGTGAAAAAT
>site_34
TCGGGGCGCAATAA
>site_35
GCTAGGTGCAAATC
>site_36
CGGAGGTGCAATAA
>site_37
ACCGGGTGCACGAA
>site_38
GATGGGTGCAAGAC
>site_39
TGGGGGTGCAGTAA
>site_40
ATGGGGTGCAGAGG
>site_41
ACTGGGTGCATTTT
>site_42
AAGAGGTGCAATTT
>site_43
GTTGGGTGAAACAG
>site_44
TGTGGGTGCAATAC
>site_45
CTTGGGTGCATTAT
>site_46
AGTGGGTGCAGTAG
>site_47
ATGGGGTGCAATTA
>site_48
CAAGGGTGCAGGAG
>site_49
TCTGGGTGCAGCGG
>site_50
ACCGGGTGCAATTT
>site_51
TCTGGCTGCAGAAT
>site_52
TACGGGTGCAGCTG
>site_53
TTCGTGTGCAAGAG
>site_54
TATGGGTGTATTAT
>site_55
TATGGTTGCAAGTA
>site_56
TATGGGTGCCGTTA
>site_57
TGGGGGTGCAAGAG
>site_58
ATTGGGTGCCAGTA
>site_59
ACTGGGTGCTTGTT
>site_60
TTTAGGTGCAAGCT
>site_61
AGCGGGTGCATTAT
>site_62
TGTGTGTGCAACAT
>site_63
TATAGGTGCACAGT
>site_64
TCTGGGTGTAATAG
>site_65
ATTGGGTGCGTGAA
>site_66
AGTGGGTGTAAATT
>site_67
GGAGGGTGCAGTTT
>site_68
CTTGGGTGCCGCCT
>site_69
TATGGGTGCTGTTA
>site_70
AGTGGGTGCGTTAA
>site_71
TGTGGGTGTAGTTG
>site_72
GGGGGGTGCAATTG
>site_73
TGTGGCTGCAAAAA
>site_74
AATAGGTGCAATAA
>site_75
AATAGGTGCAATGA
>site_76
TGAGGGTGCATTAA
>site_77
CTTGGGTGTAAAAT
>site_78
AGTGGGTGCTCCTT
>site_79
TGCGGGTGCAGGTG
>site_80
AGTCGGTGCAGTTG
>site_81
ATTAGGTGCACGTT
>site_82
ATCGGGTGTAAATC
>site_83
CCTGTGCGCAATAC
>site_84
AAGGGGTGCATACC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	45	27	21	10	12	1	3	1	2	1	69	43	19	29	22
c	5	17	22	27	0	0	0	2	0	67	3	8	8	5	16
g	8	8	17	17	64	73	72	0	75	3	4	18	11	9	17
t	19	25	17	23	1	3	2	74	0	6	1	8	39	34	22
//
; Sites	77
>site_0
ACGGGGGTGCAATTT
>site_1
AACCGGGTGCAATTT
>site_2
AAAAGGGTGCAATTC
>site_3
ACCGGGGTGCAATTC
>site_4
GAATGGGTGCAAACG
>site_5
ACCTGGGTGCATTTT
>site_6
TTTGAGGTGCAATGG
>site_7
TCTGGGGTGCACTAC
>site_8
ACCCGGGTGCAAATT
>site_9
CAAAGTGTGCAATTG
>site_10
ACCCGGATGGAATAC
>site_11
AAACGGGTGCAGTTA
>site_12
TCCCGAGTGCGAGAT
>site_13
ATCGGGGTGCACATA
>site_14
TTCCGGGTGCACCAT
>site_15
TCTCGGGTGCACTTT
>site_16
AATTGGGTGCAGTAG
>site_17
ACAATGGTGCAAATC
>site_18
TTCAGGGTGCAGCTT
>site_19
AACGGGGTGCGATTT
>site_20
AAGAGGGTGCAGAGC
>site_21
ACGTGGGTGCACTAC
>site_22
ATTTGGGTGCACAAA
>site_23
AAATGGGTGCAAAGA
>site_24
ACACAGGTGCAATTA
>site_25
GCACGGGTAGAATAC
>site_26
ATTCGGGTGCTTCTG
>site_27
TGTCGGGTGAAAAAT
>site_28
CTCGGGGCGCAATAA
>site_29
AGCTAGGTGCAAATC
>site_30
GGGCGGGTACAGACA
>site_31
CCGGAGGTGCAATAA
>site_32
TACCGGGTGCACGAA
>site_33
AGATGGGTGCAAGAC
>site_34
ATGGGGGTGCAGTAA
>site_35
AATGGGGTGCAGAGG
>site_36
AACTGGGTGCATTTT
>site_37
TAAGAGGTGCAATTT
>site_38
TTGTGGGTGCAATAC
>site_39
TCTTGGGTGCATTAT
>site_40
AAGTGGGTGCAGTAG
>site_41
TATGGGGTGCAATTA
>site_42
ACAAGGGTGCAGGAG
>site_43
ACAGAGGTGCAACAA
>site_44
TAACAGGTGCATTTA
>site_45
TTCTGGGTGCAGCGG
>site_46
AACCGGGTGCAATTT
>site_47
GTACGGGTGCAGCTG
>site_48
ATTCGTGTGCAAGAG
>site_49
ATATGGTTGCAAGTA
>site_50
TTTCGGATGCACACC
>site_51
ATATGGGTGCCGTTA
>site_52
ATGGGGGTGCAAGAG
>site_53
AATTGGGTGCCAGTA
>site_54
ATTTAGGTGCAAGCT
>site_55
ATACAGGTGCAGAAA
>site_56
AAGCGGGTGCATTAT
>site_57
GTGTGTGTGCAACAT
>site_58
CGCCGGACGCAAAGC
>site_59
TTCTGGGTGTAATAG
>site_60
ATCCGGGTGCGGTGT
>site_61
AAGTGGGTGTAAATT
>site_62
GGGAGGGTGCAGTTT
>site_63
GGGGGGGTGCAATTG
>site_64
GGGGGGGTGGAACGC
>site_65
CTTCGGTTGCAGTTA
>site_66
AAATAGGTGCAATAA
>site_67
TACCGGGAGTAAGTT
>site_68
AAATAGGTGCAATGA
>site_69
AACAGGGTGCCGTTG
>site_70
TTGAGGGTGCATTAA
>site_71
ACTTGGGTGTAAAAT
>site_72
ATGCGGGTGCAGGTG
>site_73
AACAGGGTGTAAAAA
>site_74
ATACAGGTGCGATTG
>site_75
TATCGGGTGTAAATC
>site_76
AAAGGGGTGCATACC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	31	25	84	2	11	6	6	3	88	23	29
c	9	17	5	3	8	2	2	1	2	24	15
g	28	20	3	91	3	3	91	0	4	21	23
t	31	37	7	3	77	88	0	95	5	31	32
//
; Sites	99
>site_0
TCTGTTGTACT
>site_1
ACTGTTGTATG
>site_2
AGAGCTGTACG
>site_3
TTTGTTGTAAT
>site_4
GTAATTGTAGT
>site_5
GTAGTTGTATT
>site_6
GGCGTTGTAGC
>site_7
TATGTTGTACC
>site_8
ATAGTTATAGG
>site_9
TGTGTTGTATA
>site_10
CTAGTTGAAGT
>site_11
ATATTTGTAGT
>site_12
CCAGTCGTAAA
>site_13
CTAGTTGTAGA
>site_14
ATGGTTGTACG
>site_15
ATTGTTGTAAA
>site_16
TTAGTTGTGGT
>site_17
AAAGCTGTAAT
>site_18
GAAGGTGTATT
>site_19
AAGGTTGTACA
>site_20
ACAGTTGTACA
>site_21
TAAGTTATAGT
>site_22
AGAGATGTACA
>site_23
TTAGTTGTAGG
>site_24
GTAGTTCTATT
>site_25
AGAGATGTAAT
>site_26
TCAGTAGTAGT
>site_27
GTAGTAGTACC
>site_28
GAAGCTGTATC
>site_29
TTAGTTATATA
>site_30
ACAGTGGTAAC
>site_31
TTAGTGGTAAT
>site_32
TGCGTTGTATA
>site_33
ATAGTTCTACT
>site_34
TTAGTTATACT
>site_35
GCAGTTGTACA
>site_36
GTACTTGTACT
>site_37
GTAGTTGTACT
>site_38
ATAGTTGTACT
>site_39
TTAGTTGTACT
>site_40
GTACTTGTAGT
>site_41
GTAGTTGTTTG
>site_42
TGTGTTGTATT
>site_43
GAAGTGGTAAG
>site_44
GGAGCTGTACA
>site_45
TAAGTTGTTAT
>site_46
TCAGTTGTATA
>site_47
TGAGTTGTGAG
>site_48
CGCGTTGTAGG
>site_49
TTAGATGTATG
>site_50
TAAGCTGTAGA
>site_51
TGAGTTGTAGA
>site_52
AAAGTCGTATA
>site_53
TAAATTGTATA
>site_54
GGAGATGTAAA
>site_55
TAAGTTGTAAC
>site_56
CCAGTTGTCTA
>site_57
TGAGATGTAGG
>site_58
AGAGTAGTATG
>site_59
TCAGATGTATA
>site_60
CAAGTTGTAGT
>site_61
AAAGGTGTATG
>site_62
ACAGTTATACC
>site_63
AGAGTTGTAAC
>site_64
AAAGTTGAATA
>site_65
TAAGTTGTATG
>site_66
ATAGTTGTTCA
>site_67
ATAGTTATATG
>site_68
GCAGCTGTACG
>site_69
GAAGTTGTGTA
>site_70
ACAGATGTATT
>site_71
GAAGTTGTAAC
>site_72
ATATTTGTATA
>site_73
TTAGATGTAAA
>site_74
CCAGTAGTATC
>site_75
GTCGTTGTATA
>site_76
GCAGTTGTAGG
>site_77
GTACTTGTACG
>site_78
AAAGTAGTATT
>site_79
CAAGTAGTAGT
>site_80
TTAGTTGTGGA
>site_81
AGAGTTGTTAA
>site_82
AAAGTTGTAAC
>site_83
ACAGTTGTACT
>site_84
AGAGGTGTATT
>site_85
GAGGTTGTAAG
>site_86
TTATTTGTACG
>site_87
GTAGATGTAAG
>site_88
GTAGTTGTCCA
>site_89
GAAGATGTAAA
>site_90
AGAGTTGTAGC
>site_91
CGAGTTGCAGC
>site_92
GTAGCTGTATT
>site_93
TGAGCTGTACC
>site_94
TTAGTTGAAAT
>site_95
GTCGTTGTATG
>site_96
TAAGTTGTTTC
>site_97
GCAGTTGTAAT
>site_98
AAAGATGTAAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	38	44	14	4	9	0	92	4	3	1	50	18	32
c	11	16	38	5	1	92	1	86	91	81	16	27	13
g	9	12	12	6	80	0	1	4	0	1	14	23	16
t	36	22	30	79	4	2	0	0	0	11	14	26	33
//
; Sites	94
>site_0
AATTGCACCCCCG
>site_1
GGCTGCACACCAC
>site_2
GTGTGCAGCCAAT
>site_3
AATTGCACCCGGT
>site_4
AATTGCACCCTTT
>site_5
ATATGCACACAGC
>site_6
TTTTGCAACCATG
>site_7
GAATGCACCTAGA
>site_8
AATTGCACCCCGG
>site_9
TCTTTCACCCACC
>site_10
GTTTGCACCCATT
>site_11
AAATGCACCCAGG
>site_12
TAGTGCACCCCAG
>site_13
TGCTACACCCTAT
>site_14
CTATGCACCTACT
>site_15
ATTTGCACCCGGG
>site_16
CCGTGCAACCACA
>site_17
AACTGCACCCGTT
>site_18
AACAGCACCCTTT
>site_19
ATGTGCACCCCGA
>site_20
TGGTGCACCCGGA
>site_21
TGATGCACCAATC
>site_22
AAGTGCACCCGAG
>site_23
TACTGCACCCAAT
>site_24
AGCTGCACCCTGA
>site_25
TCCGACACCCATA
>site_26
TCCCGCACCCTCG
>site_27
AATCGCACCCCGT
>site_28
CTCTGCACCCTCT
>site_29
CACTTCACCCAGC
>site_30
TAGTGCACCCACG
>site_31
TTGTGCACCCAAA
>site_32
TACTACACCCAGC
>site_33
CTTTGCACCCATT
>site_34
CTCTGCAGCCATA
>site_35
TATTGCGCCCCGA
>site_36
ATTTGCACCTAGC
>site_37
GTCTGTACCCGCC
>site_38
TCGTGCACCCGGT
>site_39
AACTCCACCCCCG
>site_40
TCTTGCACCCATC
>site_41
TACTGCACCCCCA
>site_42
CTCTGCACCCCAT
>site_43
AAATGCACCCAGT
>site_44
TGTTTCACCCAAC
>site_45
TATTGCACCCACA
>site_46
TAATGCACCCAAG
>site_47
TACTGCACCCACT
>site_48
AATTGCACCCCAT
>site_49
TACTGCACCTTCT
>site_50
TCCTGCACCCTTG
>site_51
CGCTGCACCCAGA
>site_52
AATGGCACCCATA
>site_53
AATTGCACCCGGT
>site_54
TTCTGCAGCCAGA
>site_55
TTCTGCCCCCCCA
>site_56
AGCTGCACCCGTA
>site_57
TAATACACCCATA
>site_58
ACTTGCAACCATA
>site_59
AACGGCACCCATA
>site_60
TCTTGCACCCCCA
>site_61
ACTGGCACCCAAT
>site_62
ACAAGCACCCAGT
>site_63
GCTTGCACCTAAA
>site_64
TTCTGCACCTGTA
>site_65
AACTACACCCTTT
>site_66
TAATGCACCCGCT
>site_67
TGTTGCACACACA
>site_68
CTGTGCACCTATA
>site_69
TATTACACCCAGA
>site_70
TCACGCACCCAAT
>site_71
CACCGCACCCGGA
>site_72
ATTTACACCCACT
>site_73
AACTGCACCCTCC
>site_74
GGCGGCACCCAAG
>site_75
AACAGCACCCATA
>site_76
TAACGCACCCACT
>site_77
AACTACACCCACA
>site_78
AATTGCACCCCCC
>site_79
TTTTGCAGCCACA
>site_80
AACTGCAACCGAA
>site_81
ACCTTCACCCTTG
>site_82
TATTGCACCTATT
>site_83
CATTGCACCTATT
>site_84
AACGGCACCCTGT
>site_85
TAATGCACCCTCA
>site_86
TTTTACACCCAAG
>site_87
AGGAGCACCCACT
>site_88
ACCTGCACCCGCA
>site_89
AACTGCACCGACT
>site_90
AACTGCACCTTTG
>site_91
ACGTGCACCTAAT
>site_92
GTATGCACCCCTT
>site_93
GGCTGTACCCCTC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	17	8	29	2	2	0	1	1	45	35	13	14	17
c	12	13	1	1	0	1	0	47	1	3	3	3	9
g	13	12	17	45	45	0	47	0	2	5	5	9	8
t	6	15	1	0	1	47	0	0	0	5	27	22	14
//
; Sites	48
>site_0
GGGGGTGCAATTT
>site_1
CCGGGTGCAATTT
>site_2
AAGGGTGCAATTC
>site_3
CTAGGTGCATTCC
>site_4
CGGGGTGCAATTC
>site_5
TGAGATGCAAGAA
>site_6
ATGGGTGCAAACG
>site_7
CCAGGTGCCAAAC
>site_8
GAAGGTACAACAT
>site_9
TGAGGTGCAATGG
>site_10
GTAGGTGCATAGA
>site_11
CCAGATGCAATTT
>site_12
CCGGGTGCAAATT
>site_13
ACGGGTGCAGTTA
>site_14
AATGGTGCAAATC
>site_15
CGGGGTGCGATTT
>site_16
ATGGGTGCAAAGA
>site_17
ACAGGTGCAATTA
>site_18
CTACGTGCAATGA
>site_19
CGGGGCGCAATAA
>site_20
CTAGGTGCAAATC
>site_21
GGAGGTGCAATAA
>site_22
GAAGGTGCATATT
>site_23
ATGGGTGCAAGAC
>site_24
AGAGGTGCAATTT
>site_25
GTGGGTGCAATAC
>site_26
TGGGGTGCAATTA
>site_27
GAAGGTGCAGTAG
>site_28
AGAGGTGCAACAA
>site_29
ACAGGTGCATTTA
>site_30
CCGGGTGCAATTT
>site_31
TCAGTTGCAATTC
>site_32
GGGGGTGCAAGAG
>site_33
TTAGGTGCAAGCT
>site_34
AAAAGTGCAAAAG
>site_35
ACAGGTGCAGAAA
>site_36
GCGGGTGCATTAT
>site_37
ATAGGTGCACAGT
>site_38
GGGGGTGCAATTG
>site_39
ATAGGTGCAATAA
>site_40
ATAGGTGCAATGA
>site_41
GCAGGTGAAAAGA
>site_42
ACAGGTGCGATTG
>site_43
GTCGGTGCAGTTG
>site_44
AAAGGTGCAGTTA
>site_45
TTAGGTGCACGTT
>site_46
CTAAGTGCAACGA
>site_47
GAAGGTGCACAGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2026-04-09.114548
; Job done	2026-04-09.114550
; Seconds	0.15
;	user	0.15
;	system	0.07
;	cuser	1.36
;	csystem	0.23
