/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Peaks1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	115
	Sum of sequence lengths      	30662
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	266
	Possible positions           	30547
 Oligonucleotide statistics:
	Total occurrences    	30494
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	30547
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	3	60
	2	-24	[-479,-460]	-469.5	3	60
	3	-23	[-459,-440]	-449.5	3	60
	4	-22	[-439,-420]	-429.5	4	66
	5	-21	[-419,-400]	-409.5	4	80
	6	-20	[-399,-380]	-389.5	4	80
	7	-19	[-379,-360]	-369.5	4	80
	8	-18	[-359,-340]	-349.5	4	80
	9	-17	[-339,-320]	-329.5	4	80
	10	-16	[-319,-300]	-309.5	5	81
	11	-15	[-299,-280]	-289.5	5	100
	12	-14	[-279,-260]	-269.5	7	132
	13	-13	[-259,-240]	-249.5	10	173
	14	-12	[-239,-220]	-229.5	11	206
	15	-11	[-219,-200]	-209.5	18	227
	16	-10	[-199,-180]	-189.5	18	360
	17	-9	[-179,-160]	-169.5	27	504
	18	-8	[-159,-140]	-149.5	35	628
	19	-7	[-139,-120]	-129.5	49	784
	20	-6	[-119,-100]	-109.5	75	1006
	21	-5	[-99,-80]	-89.5	75	1500
	22	-4	[-79,-60]	-69.5	115	2140
	23	-3	[-59,-40]	-49.5	115	2300
	24	-2	[-39,-20]	-29.5	115	2300
	25	-1	[-19,0]	-9.5	115	2300
	26	0	[1,20]	10.5	115	2300
	27	1	[21,40]	30.5	115	2300
	28	2	[41,60]	50.5	115	2300
	29	3	[61,80]	70.5	115	2060
	30	4	[81,100]	90.5	75	1474
	31	5	[101,120]	110.5	49	980
	32	6	[121,140]	130.5	49	756
	33	7	[141,160]	150.5	35	612
	34	8	[161,180]	170.5	27	486
	35	9	[181,200]	190.5	18	353
	36	10	[201,220]	210.5	11	220
	37	11	[221,240]	230.5	11	204
	38	12	[241,260]	250.5	10	167
	39	13	[261,280]	270.5	7	128
	40	14	[281,300]	290.5	5	99
	41	15	[301,320]	310.5	4	80
	42	16	[321,340]	330.5	4	80
	43	17	[341,360]	350.5	4	80
	44	18	[361,380]	370.5	4	80
	45	19	[381,400]	390.5	4	80
	46	20	[401,420]	410.5	4	80
	47	21	[421,440]	430.5	4	64
	48	22	[441,460]	450.5	3	60
	49	23	[461,480]	470.5	3	60
	50	24	[481,500]	490.5	3	57

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 3389 114.3 49 4.0e-07 6.3e-06 5.20 1 12 4 5 2 8 8 5 3 5 13 14 16 19 33 26 32 37 47 67 97 173 243 274 261 261 282 255 243 229 183 129 86 48 66 37 12 32 12 12 19 10 4 11 1 5 16 10 5 14 3
tt tt 3072 78.5 49 4.7e-03 0.076 1.12 2 1 4 7 7 13 9 14 12 9 8 7 15 19 18 31 33 47 80 70 94 129 219 240 224 286 235 198 236 223 118 107 70 67 42 35 29 16 16 10 5 5 13 8 10 11 8 0 4 3 7
cc cc 1188 56.1 49 2.3e-01 3.6 -0.56 3 1 0 1 4 1 6 5 2 2 4 9 1 5 5 5 21 30 26 25 32 69 106 92 100 83 72 94 64 83 41 45 43 15 16 17 8 7 5 4 4 5 2 2 7 8 1 5 1 2 2
ca ca 2044 56.0 49 2.3e-01 3.6 -0.56 4 7 6 4 5 3 10 6 5 4 5 11 11 20 9 12 21 36 36 59 74 115 146 165 164 144 172 141 144 122 100 46 54 22 30 30 19 9 9 7 7 5 10 5 3 6 4 4 9 4 4
ta ta 2481 55.1 49 2.6e-01 4.1 -0.61 5 1 8 3 3 3 3 4 6 4 1 8 3 13 17 15 30 32 35 73 87 116 168 188 202 190 193 228 199 155 116 78 61 55 44 20 20 13 11 15 4 10 5 6 7 4 2 5 7 4 6
tg tg 1982 54.8 49 2.6e-01 4.2 -0.63 6 5 1 2 2 7 7 4 9 10 2 5 6 5 18 23 23 33 58 46 60 87 121 138 136 156 143 160 149 152 97 72 47 53 31 20 16 19 11 5 6 0 4 5 5 5 6 5 2 1 4
ag ag 1911 49.9 49 4.4e-01 7 -0.84 7 4 5 3 3 3 2 8 6 8 6 3 11 14 10 5 25 28 28 47 73 104 134 131 148 128 161 135 152 123 107 52 51 37 32 22 12 11 14 16 7 6 5 7 2 1 4 4 5 4 4
at at 2731 40.5 49 8.0e-01 13 -1.11 8 5 5 3 3 7 5 3 6 6 2 9 6 14 23 20 31 41 49 82 80 123 201 222 211 227 205 236 211 173 124 83 64 57 49 20 17 21 12 7 8 7 6 9 5 6 6 4 5 7 5
gg gg 1307 36.1 49 9.2e-01 15 -1.17 9 7 3 5 5 5 3 2 2 2 8 7 9 2 7 8 22 28 32 34 46 64 80 101 100 93 81 83 84 106 82 39 31 25 17 18 12 10 10 8 9 1 2 2 1 2 2 1 3 3 0
ac ac 1694 34.8 49 9.4e-01 15 -1.18 10 3 7 5 4 3 6 6 4 2 7 10 9 12 9 10 19 31 32 44 64 106 118 120 127 115 129 137 121 102 74 46 40 29 26 28 18 4 12 10 3 5 9 3 4 3 2 5 6 3 2
ct ct 1759 34.8 49 9.4e-01 15 -1.18 11 1 2 4 6 6 3 4 6 3 7 3 9 11 14 12 19 38 54 49 64 77 119 121 122 113 116 135 141 118 87 68 43 44 25 26 12 10 10 5 1 7 7 5 11 7 3 5 2 2 2
tc tc 1645 31.5 49 9.8e-01 16 -1.19 12 2 2 4 8 7 6 3 3 4 5 4 12 15 10 13 16 39 34 56 52 69 121 135 122 119 122 108 130 102 73 47 36 37 21 20 9 11 9 2 5 7 4 4 11 8 5 5 2 4 2
gc gc 1166 25.0 49 1.0e+00 16 -1.20 13 3 4 3 4 0 4 3 3 3 2 1 3 5 6 12 15 20 37 29 45 55 76 86 89 75 80 78 90 79 66 40 39 14 19 14 8 9 6 2 5 2 5 2 4 6 3 2 3 2 5
gt gt 1633 23.4 49 1.0e+00 16 -1.20 14 2 4 3 2 6 6 5 6 9 0 4 9 4 14 16 22 20 30 40 57 70 110 106 128 127 127 131 126 115 72 55 36 46 25 14 15 11 9 9 6 3 2 2 5 3 5 6 3 2 5
ga ga 1795 21.7 49 1.0e+00 16 -1.20 15 6 1 4 2 7 1 6 6 7 9 4 9 12 11 9 21 33 33 44 58 102 127 129 113 135 136 135 140 118 90 55 39 44 35 23 9 15 15 12 6 5 2 8 1 1 8 2 2 3 2
cg cg 697 15.7 49 1.0e+00 16 -1.20 16 0 4 4 6 1 1 2 1 2 2 1 3 3 2 10 10 11 17 19 23 41 51 52 53 48 46 46 55 40 26 18 16 19 8 9 4 6 6 4 4 2 0 1 3 4 5 1 1 2 4 
 Host name	rsat
 Job started	2026-04-09.114538
 Job done	2026-04-09.114539
 Seconds	0.24
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