/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	12	92
		file1	2	11	134
		file1	3	11	91
		file1	4	12	113
		file1	5	11	98
		file1	6	14	85
		file1	7	15	77
		file1	8	11	99
		file1	9	13	94
		file1	10	13	48
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		12		92
		file2		2		11		134
		file2		3		11		91
		file2		4		12		113
		file2		5		11		98
		file2		6		14		85
		file2		7		15		77
		file2		8		11		99
		file2		9		13		94
		file2		10		13		48
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 0.994 0.994 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 0.994 0.994 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 0.993 0.993 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 0.993 0.993 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 0.993 0.922 14 13 13 14 0.9286 0.9286 1.0000 R 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 0.993 0.922 13 14 13 14 0.9286 1.0000 0.9286 R -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.996 0.920 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.996 0.920 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.983 0.918 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.983 0.918 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 0.993 0.917 12 13 12 13 0.9231 1.0000 0.9231 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 0.993 0.917 13 12 12 13 0.9231 0.9231 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.922 0.856 14 13 13 14 0.9286 0.9286 1.0000 D 1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.922 0.856 13 14 13 14 0.9286 1.0000 0.9286 D -1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.995 0.852 12 14 12 14 0.8571 1.0000 0.8571 R -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.995 0.852 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.990 0.849 12 14 12 14 0.8571 1.0000 0.8571 R -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.990 0.849 14 12 12 14 0.8571 0.8571 1.0000 R 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 0.976 0.846 15 13 13 15 0.8667 0.8667 1.0000 R 1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 0.976 0.846 13 15 13 15 0.8667 1.0000 0.8667 R -1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.941 0.816 13 15 13 15 0.8667 1.0000 0.8667 D -2
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.941 0.816 15 13 13 15 0.8667 0.8667 1.0000 D 2
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.984 0.787 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.984 0.787 15 12 12 15 0.8000 0.8000 1.0000 R 1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.977 0.782 15 12 12 15 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.977 0.782 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 0.902 0.773 13 13 12 14 0.8571 0.9231 0.9231 R -1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 0.902 0.773 13 13 12 14 0.8571 0.9231 0.9231 R -1
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 0.806 0.739 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 0.806 0.739 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 0.790 0.724 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 0.790 0.724 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 0.915 0.719 12 13 11 14 0.7857 0.9167 0.8462 R -2
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 0.915 0.719 13 12 11 14 0.7857 0.8462 0.9167 R -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.901 0.708 13 12 11 14 0.7857 0.8462 0.9167 R -1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.901 0.708 12 13 11 14 0.7857 0.9167 0.8462 R -2
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.799 0.676 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.799 0.676 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.789 0.620 14 11 11 14 0.7857 0.7857 1.0000 R 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.789 0.620 11 14 11 14 0.7857 1.0000 0.7857 R -3
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.734 0.539 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.734 0.539 15 11 11 15 0.7333 0.7333 1.0000 R 1 
 Host name	rsat
 Job started	2026-04-09.114557
 Job done	2026-04-09.114607
 Seconds	0.4
	user	0.4
	system	0.33
	cuser	7.75
;	csystem	1.44