One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.114535_2026-04-09.114535_PPpV0r/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift2 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=13; shift=2; ncol=15; --vbrGGTGCAAwww ; Alignment reference a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=2/6; ncol2=14; w=-1; offset=-1; strand=D; shift=1; score=0.855895; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=3/6; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.815851; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22

oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m4_rc; m=4/6; ncol2=13; w=-1; offset=-1; strand=R; shift=1; score=0.772724; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=5/6; ncol2=12; w=-1; offset=-1; strand=R; shift=1; score=0.719226; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m1_rc; m=6/6; ncol2=12; w=-1; offset=-1; strand=R; shift=1; score=0.707766; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; arAAGAAAgda ; Alignment reference a 41 41 92 92 0 97 94 93 23 34 41 c 16 10 0 4 0 0 1 3 11 14 14 g 20 25 1 0 98 0 0 1 53 25 20 t 21 22 5 2 0 1 3 1 11 25 23

oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; arAAGAAAgda ; cor=; Ncor= a 41 41 92 92 0 97 94 93 23 34 41 c 16 10 0 4 0 0 1 3 11 14 14 g 20 25 1 0 98 0 0 1 53 25 20 t 21 22 5 2 0 1 3 1 11 25 23

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=1; ncol=14; -wayTGCACCCayw ; Alignment reference a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33

oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33

oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=2/7; ncol2=14; w=-1; offset=-1; strand=R; shift=0; score=0.922415; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=3/7; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.91978; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33

oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=4/7; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.917047; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46

oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.845941; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27

oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=6/7; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.772724; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=7/7; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.675806; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; awmyGGGTGCAatww ; Alignment reference a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.917643; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26

oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m4_rc; m=3/7; ncol2=13; w=0; offset=1; strand=R; shift=1; score=0.845941; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=4/7; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.815851; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=5/7; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.787101; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m1_rc; m=6/7; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.781679; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0

oligos_6nt_mkv2_m2_rc_shift1 (oligos_6nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2_rc; m=7/7; ncol2=11; w=0; offset=1; strand=R; shift=1; score= 0.5386; -wrTGGGTGTdw--- ; cor=; Ncor= a 0 44 39 11 2 5 1 2 6 4 38 35 0 0 0 c 0 10 27 6 5 3 3 0 1 21 23 24 0 0 0 g 0 29 38 8 121 104 124 3 124 3 35 33 0 0 0 t 0 51 30 109 6 22 6 129 3 106 38 42 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -wstGGGTGCAatww ; Alignment reference a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26

oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m4_rc; m=2/7; ncol2=13; w=0; offset=0; strand=R; shift=1; score=0.922415; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.917643; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=4/7; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.855895; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1_rc; m=5/7; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.85247; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=6/7; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.848797; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0

oligos_6nt_mkv2_m2_rc_shift1 (oligos_6nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2_rc; m=7/7; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.620021; -wrTGGGTGTdw--- ; cor=; Ncor= a 0 44 39 11 2 5 1 2 6 4 38 35 0 0 0 c 0 10 27 6 5 3 3 0 1 21 23 24 0 0 0 g 0 29 38 8 121 104 124 3 124 3 35 33 0 0 0 t 0 51 30 109 6 22 6 129 3 106 38 42 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift0 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; wrTACAACTah ; Alignment reference a 26 31 10 89 0 81 73 2 4 29 27 c 20 20 9 0 85 2 2 88 1 20 27 g 18 24 3 1 1 2 6 1 5 21 11 t 27 16 69 1 5 6 10 0 81 21 26

oligos_6nt_mkv2_m3_shift0 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wrTACAACTah ; cor=; Ncor= a 26 31 10 89 0 81 73 2 4 29 27 c 20 20 9 0 85 2 2 88 1 20 27 g 18 24 3 1 1 2 6 1 5 21 11 t 27 16 69 1 5 6 10 0 81 21 26

oligos_7nt_mkv2_m3_rc_shift0 (oligos_7nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m3_rc; m=2/2; ncol2=11; w=0; offset=0; strand=R; shift=0; score=0.993633; waTACAACTwh ; cor=; Ncor= a 32 31 5 95 0 88 77 3 7 37 31 c 23 21 4 0 91 3 3 91 3 20 28 g 15 24 2 1 2 2 8 3 5 17 9 t 29 23 88 3 6 6 11 2 84 25 31

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --wyTGCACCCasw ; Alignment reference a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33

oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.993409; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46

oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/7; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.91978; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33

oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.85247; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31

oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.781679; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=6/7; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.738743; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m5_rc; m=7/7; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.707766; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; dwAGTTGTAtw ; Alignment reference a 31 25 84 2 11 6 6 3 88 23 29 c 9 17 5 3 8 2 2 1 2 24 15 g 28 20 3 91 3 3 91 0 4 21 23 t 31 37 7 3 77 88 0 95 5 31 32

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; dwAGTTGTAtw ; cor=; Ncor= a 31 25 84 2 11 6 6 3 88 23 29 c 9 17 5 3 8 2 2 1 2 24 15 g 28 20 3 91 3 3 91 0 4 21 23 t 31 37 7 3 77 88 0 95 5 31 32

oligos_6nt_mkv2_m3_rc_shift0 (oligos_6nt_mkv2_m3_rc)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m3_rc; m=2/2; ncol2=11; w=0; offset=0; strand=R; shift=0; score=0.993633; dtAGTTGTAyw ; cor=; Ncor= a 26 21 81 0 10 6 5 1 69 16 27 c 11 21 5 1 6 2 1 1 3 24 18 g 27 20 1 88 2 2 85 0 9 20 20 t 27 29 4 2 73 81 0 89 10 31 26

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=12; shift=2; ncol=14; --ayTGCACCCayw ; Alignment reference a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46

oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.993409; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33

oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=3/7; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.917047; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33

oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.848797; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31

oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.787101; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=6/7; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.724422; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=7/7; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.719226; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=3; ncol=14; ---whACACCCAyw ; Alignment reference a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/6; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m1; m=2/6; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.738743; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33

oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4; m=3/6; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.724422; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46

oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m4; m=4/6; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.675806; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33

oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1_rc; m=5/6; ncol2=14; w=-3; offset=-3; strand=R; shift=0; score=0.620021; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31

oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2_rc; m=6/6; ncol2=15; w=-3; offset=-3; strand=R; shift=0; score= 0.5386; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=13; shift=2; ncol=15; --vbrGGTGCAAwww ; Alignment reference a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=2/6; ncol2=14; w=-1; offset=-1; strand=D; shift=1; score=0.855895; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=3/6; ncol2=15; w=-2; offset=-2; strand=D; shift=0; score=0.815851; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22
oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m4_rc; m=4/6; ncol2=13; w=-1; offset=-1; strand=R; shift=1; score=0.772724; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=5/6; ncol2=12; w=-1; offset=-1; strand=R; shift=1; score=0.719226; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m1_rc; m=6/6; ncol2=12; w=-1; offset=-1; strand=R; shift=1; score=0.707766; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=1; ncol=14; -wayTGCACCCayw ; Alignment reference a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33
oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=2/7; ncol2=14; w=-1; offset=-1; strand=R; shift=0; score=0.922415; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=3/7; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.91978; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=4/7; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.917047; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46
oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-1; offset=-1; strand=R; shift=0; score=0.845941; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27
oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=6/7; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.772724; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=7/7; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.675806; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=15; shift=0; ncol=15; awmyGGGTGCAatww ; Alignment reference a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/7; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/7; ncol2=14; w=0; offset=1; strand=D; shift=1; score=0.917643; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26
oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m4_rc; m=3/7; ncol2=13; w=0; offset=1; strand=R; shift=1; score=0.845941; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=4/7; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.815851; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=5/7; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.787101; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m1_rc; m=6/7; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.781679; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0
oligos_6nt_mkv2_m2_rc_shift1 (oligos_6nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2_rc; m=7/7; ncol2=11; w=0; offset=1; strand=R; shift=1; score= 0.5386; -wrTGGGTGTdw--- ; cor=; Ncor= a 0 44 39 11 2 5 1 2 6 4 38 35 0 0 0 c 0 10 27 6 5 3 3 0 1 21 23 24 0 0 0 g 0 29 38 8 121 104 124 3 124 3 35 33 0 0 0 t 0 51 30 109 6 22 6 129 3 106 38 42 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=14; shift=1; ncol=15; -wstGGGTGCAatww ; Alignment reference a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -wstGGGTGCAatww ; cor=; Ncor= a 0 31 21 7 12 0 0 0 0 4 76 38 21 34 24 c 0 15 22 14 1 0 4 2 0 74 3 12 9 6 15 g 0 11 23 15 71 80 78 0 85 0 3 21 14 11 20 t 0 28 19 49 1 5 3 83 0 7 3 14 41 34 26
oligos_7nt_mkv2_m4_rc_shift1 (oligos_7nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m4_rc; m=2/7; ncol2=13; w=0; offset=0; strand=R; shift=1; score=0.922415; -wrtGGGTGCArtw- ; cor=; Ncor= a 0 33 26 14 11 0 0 0 2 4 79 30 22 36 0 c 0 16 23 14 1 0 4 1 0 80 6 12 12 9 0 g 0 13 27 16 81 91 86 1 92 1 5 38 16 11 0 t 0 32 18 50 1 3 4 92 0 9 4 14 44 38 0
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2; m=3/7; ncol2=15; w=-1; offset=-1; strand=D; shift=0; score=0.917643; awmyGGGTGCAatww ; cor=; Ncor= a 45 27 21 10 12 1 3 1 2 1 69 43 19 29 22 c 5 17 22 27 0 0 0 2 0 67 3 8 8 5 16 g 8 8 17 17 64 73 72 0 75 3 4 18 11 9 17 t 19 25 17 23 1 3 2 74 0 6 1 8 39 34 22
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=4/7; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.855895; --vbrGGTGCAAwww ; cor=; Ncor= a 0 0 17 8 29 2 2 0 1 1 45 35 13 14 17 c 0 0 12 13 1 1 0 1 0 47 1 3 3 3 9 g 0 0 13 12 17 45 45 0 47 0 2 5 5 9 8 t 0 0 6 15 1 0 1 47 0 0 0 5 27 22 14
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1_rc; m=5/7; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.85247; -wstGGGTGCArw-- ; cor=; Ncor= a 0 33 21 15 9 0 1 0 1 3 74 31 26 0 0 c 0 15 27 15 1 0 4 2 0 80 5 16 11 0 0 g 0 12 25 13 81 90 84 0 91 0 6 27 14 0 0 t 0 32 19 49 1 2 3 90 0 9 7 18 41 0 0
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=6/7; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.848797; -wrtGGGTGCArt-- ; cor=; Ncor= a 0 46 32 21 16 0 1 0 2 3 94 36 26 0 0 c 0 18 28 21 2 0 2 2 0 94 6 18 15 0 0 g 0 15 29 27 94 107 107 2 111 2 6 34 17 0 0 t 0 34 24 44 1 6 3 109 0 14 7 25 55 0 0
oligos_6nt_mkv2_m2_rc_shift1 (oligos_6nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2_rc; m=7/7; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.620021; -wrTGGGTGTdw--- ; cor=; Ncor= a 0 44 39 11 2 5 1 2 6 4 38 35 0 0 0 c 0 10 27 6 5 3 3 0 1 21 23 24 0 0 0 g 0 29 38 8 121 104 124 3 124 3 35 33 0 0 0 t 0 51 30 109 6 22 6 129 3 106 38 42 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --wyTGCACCCasw ; Alignment reference a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.993409; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/7; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.91978; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33
oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.85247; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31
oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.781679; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=6/7; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.738743; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44
oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m5_rc; m=7/7; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.707766; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=12; shift=2; ncol=14; --ayTGCACCCayw ; Alignment reference a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/7; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.993409; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=3/7; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.917047; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33
oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=14; w=-2; offset=-2; strand=R; shift=0; score=0.848797; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31
oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.787101; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=6/7; ncol2=11; w=0; offset=1; strand=D; shift=3; score=0.724422; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44
oligos_7nt_mkv2_m5_rc_shift0 (oligos_7nt_mkv2_m5_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=7/7; ncol2=13; w=-2; offset=-2; strand=R; shift=0; score=0.719226; wwwTTGCACCyvb- ; cor=; Ncor= a 14 22 27 5 0 0 0 47 1 0 1 15 6 0 c 8 9 5 5 2 0 47 0 45 45 17 12 13 0 g 9 3 3 3 1 47 0 1 0 1 1 13 12 0 t 17 14 13 35 45 1 1 0 2 2 29 8 17 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=11; shift=3; ncol=14; ---whACACCCAyw ; Alignment reference a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/6; ncol2=11; w=0; offset=0; strand=D; shift=3; score= 1; ---whACACCCAyw ; cor=; Ncor= a 0 0 0 42 38 106 3 129 6 22 6 109 30 51 c 0 0 0 33 35 3 124 3 124 104 121 8 38 29 g 0 0 0 24 23 21 1 0 3 3 5 6 27 10 t 0 0 0 35 38 4 6 2 1 5 2 11 39 44
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m1; m=2/6; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.738743; --wyTGCACCCasw ; cor=; Ncor= a 0 0 41 18 7 9 0 90 3 2 1 49 19 32 c 0 0 14 27 6 0 91 0 84 90 81 13 25 12 g 0 0 11 16 5 80 0 2 4 0 1 15 27 15 t 0 0 26 31 74 3 1 0 1 0 9 15 21 33
oligos_6nt_mkv2_m4_shift2 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4; m=3/6; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.724422; --ayTGCACCCayw ; cor=; Ncor= a 0 0 55 25 7 14 0 109 3 6 1 44 24 34 c 0 0 17 34 6 2 111 2 107 107 94 27 29 15 g 0 0 15 18 6 94 0 2 2 0 2 21 28 18 t 0 0 26 36 94 3 2 0 1 0 16 21 32 46
oligos_7nt_mkv2_m4_shift1 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m4; m=4/6; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.675806; -wayTGCACCCayw ; cor=; Ncor= a 0 38 44 14 4 9 0 92 4 3 1 50 18 32 c 0 11 16 38 5 1 92 1 86 91 81 16 27 13 g 0 9 12 12 6 80 0 1 4 0 1 14 23 16 t 0 36 22 30 79 4 2 0 0 0 11 14 26 33
oligos_7nt_mkv2_m1_rc_shift0 (oligos_7nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1_rc; m=5/6; ncol2=14; w=-3; offset=-3; strand=R; shift=0; score=0.620021; wwatTGCACCCasw ; cor=; Ncor= a 26 34 41 14 3 7 0 83 3 5 1 49 19 28 c 20 11 14 21 3 0 85 0 78 80 71 15 23 11 g 15 6 9 12 3 74 0 2 4 0 1 14 22 15 t 24 34 21 38 76 4 0 0 0 0 12 7 21 31
oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2_rc; m=6/6; ncol2=15; w=-3; offset=-3; strand=R; shift=0; score= 0.5386; wwatTGCACCCrkw ; cor=; Ncor= a 22 34 39 8 1 6 0 74 2 3 1 23 17 25 c 17 9 11 18 4 3 75 0 72 73 64 17 17 8 g 16 5 8 8 3 67 0 2 0 0 0 27 22 17 t 22 29 19 43 69 1 2 1 3 1 12 10 21 27