/var/www/html/rsat/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title nhr-148_motif_search -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	240
	Sum of sequence lengths      	239760
	Min sequence length          	0
	Max sequence length          	999
	Average sequence length      	999
	Possible positions           	239520
 Oligonucleotide statistics:
	Total occurrences    	152901
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	239520
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	240	4800
	2	-24	[-479,-460]	-469.5	240	4800
	3	-23	[-459,-440]	-449.5	240	4800
	4	-22	[-439,-420]	-429.5	240	4800
	5	-21	[-419,-400]	-409.5	240	4800
	6	-20	[-399,-380]	-389.5	240	4800
	7	-19	[-379,-360]	-369.5	240	4800
	8	-18	[-359,-340]	-349.5	240	4800
	9	-17	[-339,-320]	-329.5	240	4800
	10	-16	[-319,-300]	-309.5	240	4800
	11	-15	[-299,-280]	-289.5	240	4800
	12	-14	[-279,-260]	-269.5	240	4800
	13	-13	[-259,-240]	-249.5	240	4800
	14	-12	[-239,-220]	-229.5	240	4800
	15	-11	[-219,-200]	-209.5	240	4800
	16	-10	[-199,-180]	-189.5	240	4800
	17	-9	[-179,-160]	-169.5	240	4800
	18	-8	[-159,-140]	-149.5	240	4800
	19	-7	[-139,-120]	-129.5	240	4800
	20	-6	[-119,-100]	-109.5	240	4800
	21	-5	[-99,-80]	-89.5	240	4800
	22	-4	[-79,-60]	-69.5	240	4800
	23	-3	[-59,-40]	-49.5	240	4800
	24	-2	[-39,-20]	-29.5	240	4800
	25	-1	[-19,0]	-9.5	240	4800
	26	0	[1,20]	10.5	240	4800
	27	1	[21,40]	30.5	240	4800
	28	2	[41,60]	50.5	240	4800
	29	3	[61,80]	70.5	240	4800
	30	4	[81,100]	90.5	240	4800
	31	5	[101,120]	110.5	240	4800
	32	6	[121,140]	130.5	240	4800
	33	7	[141,160]	150.5	240	4800
	34	8	[161,180]	170.5	240	4800
	35	9	[181,200]	190.5	240	4800
	36	10	[201,220]	210.5	240	4800
	37	11	[221,240]	230.5	240	4800
	38	12	[241,260]	250.5	240	4800
	39	13	[261,280]	270.5	240	4800
	40	14	[281,300]	290.5	240	4800
	41	15	[301,320]	310.5	240	4800
	42	16	[321,340]	330.5	240	4800
	43	17	[341,360]	350.5	240	4800
	44	18	[361,380]	370.5	240	4800
	45	19	[381,400]	390.5	240	4800
	46	20	[401,420]	410.5	240	4800
	47	21	[421,440]	430.5	240	4800
	48	22	[441,460]	450.5	240	4800
	49	23	[461,480]	470.5	240	4800
	50	24	[481,500]	490.5	240	4320

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 22106 235.5 49 3.3e-26 5.3e-25 24.28 1 473 486 419 453 470 445 455 449 451 393 419 444 469 428 410 423 440 468 454 475 426 426 400 470 358 440 490 459 451 445 450 414 426 412 459 435 444 373 376 378 352 353 447 409 468 510 546 566 493 506
ag ag 7136 112.2 49 7.4e-07 1.2e-05 4.93 2 177 179 162 157 157 153 171 150 151 155 162 155 133 153 149 139 161 161 162 168 149 128 189 127 138 126 137 139 135 136 133 140 141 125 120 127 133 107 140 138 140 137 106 127 119 112 136 127 145 124
tc tc 9946 98.2 49 3.8e-05 0.00061 3.22 3 179 216 212 202 211 221 205 207 203 190 175 197 190 200 209 209 205 185 183 202 180 188 191 176 192 176 179 183 207 191 180 183 169 199 196 211 176 183 198 191 194 188 207 211 198 238 240 246 228 246
gg gg 4613 96.0 49 7.0e-05 0.0011 2.95 4 118 120 101 96 105 81 83 99 87 94 103 105 86 104 101 100 84 119 89 101 108 130 83 90 86 94 86 96 80 87 80 107 96 80 68 97 75 101 85 81 96 94 79 92 78 66 78 94 85 65
aa aa 20486 93.1 49 1.5e-04 0.0024 2.62 5 432 417 456 428 425 423 448 425 418 474 439 416 416 435 396 420 437 398 409 386 402 427 414 406 444 436 404 398 414 435 449 403 354 404 416 357 369 406 388 362 355 415 387 358 362 413 415 397 448 350
ga ga 8991 90.3 49 3.0e-04 0.0048 2.32 6 220 237 206 208 202 184 194 208 192 188 183 164 177 197 184 177 182 195 195 194 183 176 201 185 175 168 163 180 168 166 167 184 165 148 153 166 182 154 173 172 168 171 158 182 157 148 170 170 191 160
tg tg 9232 83.5 49 1.5e-03 0.024 1.61 7 217 213 216 201 175 189 205 196 198 166 187 169 193 185 201 186 176 201 222 190 205 204 175 174 185 172 206 176 172 178 189 212 191 172 147 182 194 176 172 185 181 158 150 179 190 191 166 154 167 143
at at 13448 80.1 49 3.3e-03 0.053 1.27 8 296 290 265 282 300 294 274 299 249 274 255 294 269 268 284 270 248 231 260 264 266 270 258 279 246 252 259 293 293 262 284 254 258 274 271 273 282 245 229 228 232 246 263 251 279 287 270 275 310 293
ta ta 9429 71.6 49 1.9e-02 0.31 0.51 9 214 193 178 206 194 200 192 201 173 186 198 230 189 190 201 201 187 158 178 172 181 210 204 186 175 194 183 199 212 198 207 174 200 204 196 189 174 158 159 156 177 172 177 160 217 183 180 182 196 185
gt gt 7317 65.6 49 5.7e-02 0.9 0.04 10 157 160 165 158 125 153 169 140 151 130 158 142 141 148 159 155 155 162 178 155 149 158 152 126 129 141 165 136 138 145 140 157 146 145 115 154 138 120 147 142 165 126 118 133 163 152 145 141 134 136
ca ca 9395 63.6 49 7.9e-02 1.3 -0.10 11 202 183 210 174 193 202 195 189 197 198 195 183 184 178 188 185 190 171 178 207 186 166 189 185 194 172 170 182 171 183 176 175 164 185 182 171 176 204 178 190 181 200 178 178 173 215 211 218 225 215
gc gc 5220 62.5 49 9.3e-02 1.5 -0.17 12 128 122 109 106 115 100 101 104 120 121 115 103 105 100 106 95 99 123 98 107 116 94 105 103 124 95 95 113 105 107 98 106 126 92 91 77 107 110 111 114 117 103 97 97 94 100 78 86 103 79
cg cg 5155 56.5 49 2.2e-01 3.4 -0.54 13 120 119 100 117 106 97 96 97 115 113 106 90 92 115 93 105 102 114 96 90 106 83 100 106 110 106 82 113 103 101 86 97 103 86 103 78 100 103 123 102 127 108 106 110 107 98 102 102 109 112
ac ac 7219 56.0 49 2.3e-01 3.7 -0.56 14 182 136 165 147 129 143 137 149 157 145 151 140 151 145 129 162 142 135 131 147 140 134 151 155 157 154 136 119 131 144 132 135 137 143 126 125 122 160 138 162 146 165 140 150 143 146 164 163 143 135
cc cc 5385 50.0 49 4.3e-01 6.9 -0.84 15 106 106 122 107 120 116 94 113 102 103 114 91 94 94 105 107 122 101 131 94 113 109 109 104 108 111 101 99 98 96 114 98 118 99 114 98 101 126 115 97 95 105 121 105 121 140 107 108 113 100
ct ct 7823 49.5 49 4.5e-01 7.3 -0.86 16 161 162 179 164 163 162 162 161 162 152 139 165 169 156 165 173 152 162 145 138 164 171 143 153 162 161 147 123 166 162 142 154 168 158 134 168 125 147 142 167 156 150 149 177 162 163 172 171 146 128 
 Host name	rsat
 Job started	2026-04-09.163655
 Job done	2026-04-09.163656
 Seconds	1.41
	user	1.41
	system	0.01
	cuser	0
;	csystem	0