One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/09/peak-motifs.2026-04-09.163650_2026-04-09.163650_d8dipw/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; waAAAATTGwa ; Alignment reference a 185 259 579 570 555 585 0 15 0 238 242 c 119 66 1 3 5 0 2 0 0 97 92 g 89 139 0 1 0 0 0 0 585 89 127 t 192 121 5 11 25 0 583 570 0 161 124

oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4)
; oligos_7nt_mkv4_m4 versus oligos_7nt_mkv4_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; waAAAATTGwa ; cor=; Ncor= a 185 259 579 570 555 585 0 15 0 238 242 c 119 66 1 3 5 0 2 0 0 97 92 g 89 139 0 1 0 0 0 0 585 89 127 t 192 121 5 11 25 0 583 570 0 161 124

oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)
; oligos_7nt_mkv4_m4 versus oligos_6nt_mkv3_m2; m=2/2; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.886817; -raAAATTGwa ; cor=; Ncor= a 0 367 519 903 902 904 0 2 0 334 345 c 0 99 139 0 0 0 0 0 0 185 169 g 0 226 165 0 0 0 0 0 904 138 165 t 0 212 81 1 2 0 904 902 0 247 225

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; waAAAAATCwa ; Alignment reference a 197 255 565 576 554 563 591 0 3 221 260 c 147 94 1 1 0 4 0 0 589 70 94 g 78 113 0 0 2 2 1 0 0 142 129 t 170 130 26 15 36 23 0 592 0 159 109

oligos_7nt_mkv4_m5_shift0 (oligos_7nt_mkv4_m5)
; oligos_7nt_mkv4_m5 versus oligos_7nt_mkv4_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; waAAAAATCwa ; cor=; Ncor= a 197 255 565 576 554 563 591 0 3 221 260 c 147 94 1 1 0 4 0 0 589 70 94 g 78 113 0 0 2 2 1 0 0 142 129 t 170 130 26 15 36 23 0 592 0 159 109

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; wwtCTGAAAATcww ; Alignment reference a 173 129 48 25 12 43 406 435 422 383 31 58 137 137 c 73 78 40 410 19 3 23 4 7 20 15 254 89 79 g 74 78 69 4 16 399 20 7 8 9 15 42 73 109 t 138 173 301 19 411 13 9 12 21 46 397 104 159 133

oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1 versus oligos_6nt_mkv3_m1; m=1/1; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; wwtCTGAAAATcww ; cor=; Ncor= a 173 129 48 25 12 43 406 435 422 383 31 58 137 137 c 73 78 40 410 19 3 23 4 7 20 15 254 89 79 g 74 78 69 4 16 399 20 7 8 9 15 42 73 109 t 138 173 301 19 411 13 9 12 21 46 397 104 159 133

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m1_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wrhTACaGTAry ; Alignment reference a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203

oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wrhTACaGTAry ; cor=; Ncor= a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203

oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.939149; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219

oligos_6nt_mkv3_m3_rc_shift1 (oligos_6nt_mkv3_m3_rc)
; oligos_7nt_mkv4_m1 versus oligos_6nt_mkv3_m3_rc; m=3/3; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.913848; -ahTACAGTAwy ; cor=; Ncor= a 0 245 188 27 593 20 490 46 32 599 224 162 c 0 107 176 8 23 626 46 32 13 12 110 185 g 0 155 108 8 27 10 46 579 11 5 165 86 t 0 167 202 631 31 18 92 17 618 58 175 241

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; dwCGAGACCcmw ; Alignment reference a 87 99 14 15 282 13 280 22 32 77 85 88 c 40 56 270 4 0 13 8 273 246 112 85 58 g 84 71 7 284 8 275 8 7 16 50 74 68 t 100 85 20 8 21 10 15 9 17 72 67 97

oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5 versus oligos_6nt_mkv3_m5; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; dwCGAGACCcmw ; cor=; Ncor= a 87 99 14 15 282 13 280 22 32 77 85 88 c 40 56 270 4 0 13 8 273 246 112 85 58 g 84 71 7 284 8 275 8 7 16 50 74 68 t 100 85 20 8 21 10 15 9 17 72 67 97

oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_6nt_mkv3_m5 versus oligos_7nt_mkv4_m2; m=2/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.980736; daCGAGACCcaw ; cor=; Ncor= a 53 77 8 4 161 11 177 10 21 24 70 53 c 19 27 171 0 1 8 3 176 156 125 45 29 g 52 44 2 179 6 169 2 5 8 21 34 47 t 69 45 12 10 25 5 11 2 8 23 44 64

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; yyCCCsCCCmmm ; Alignment reference a 51 35 14 6 8 5 5 8 43 140 94 123 c 130 181 311 338 340 108 356 351 292 133 179 128 g 83 55 5 20 7 244 5 5 19 42 28 38 t 107 100 41 7 16 14 5 7 17 56 70 82

oligos_6nt_mkv3_m4_shift0 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4 versus oligos_6nt_mkv3_m4; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; yyCCCsCCCmmm ; cor=; Ncor= a 51 35 14 6 8 5 5 8 43 140 94 123 c 130 181 311 338 340 108 356 351 292 133 179 128 g 83 55 5 20 7 244 5 5 19 42 28 38 t 107 100 41 7 16 14 5 7 17 56 70 82

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; daCGAGACCcaw ; Alignment reference a 53 77 8 4 161 11 177 10 21 24 70 53 c 19 27 171 0 1 8 3 176 156 125 45 29 g 52 44 2 179 6 169 2 5 8 21 34 47 t 69 45 12 10 25 5 11 2 8 23 44 64

oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2)
; oligos_7nt_mkv4_m2 versus oligos_7nt_mkv4_m2; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; daCGAGACCcaw ; cor=; Ncor= a 53 77 8 4 161 11 177 10 21 24 70 53 c 19 27 171 0 1 8 3 176 156 125 45 29 g 52 44 2 179 6 169 2 5 8 21 34 47 t 69 45 12 10 25 5 11 2 8 23 44 64

oligos_6nt_mkv3_m5_shift0 (oligos_6nt_mkv3_m5)
; oligos_7nt_mkv4_m2 versus oligos_6nt_mkv3_m5; m=2/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.980736; dwCGAGACCcmw ; cor=; Ncor= a 87 99 14 15 282 13 280 22 32 77 85 88 c 40 56 270 4 0 13 8 273 246 112 85 58 g 84 71 7 284 8 275 8 7 16 50 74 68 t 100 85 20 8 21 10 15 9 17 72 67 97

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift0 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; wwwGAAATAww ; Alignment reference a 148 131 166 0 429 398 446 0 454 127 155 c 85 53 58 0 0 7 4 0 0 73 51 g 65 113 86 452 1 8 2 0 0 78 81 t 156 157 144 2 24 41 2 454 0 176 167

positions_6nt_m1_shift0 (positions_6nt_m1)
; positions_6nt_m1 versus positions_6nt_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwwGAAATAww ; cor=; Ncor= a 148 131 166 0 429 398 446 0 454 127 155 c 85 53 58 0 0 7 4 0 0 73 51 g 65 113 86 452 1 8 2 0 0 78 81 t 156 157 144 2 24 41 2 454 0 176 167

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv4_m3_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; dryTACcGTArt ; Alignment reference a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219

oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)
; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219

oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)
; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m1; m=2/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.939149; wrhTACaGTAry ; cor=; Ncor= a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203

oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)
; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.850289; -rwTACTGTAdt ; cor=; Ncor= a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -rwTACTGTAdt ; Alignment reference a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245

oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -rwTACTGTAdt ; cor=; Ncor= a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245

oligos_7nt_mkv4_m1_rc_shift1 (oligos_7nt_mkv4_m1_rc)
; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m1_rc; m=2/3; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.913848; -ryTACtGTAdy ; cor=; Ncor= a 0 203 129 40 502 12 93 16 17 504 136 127 c 0 56 151 4 4 475 44 8 23 7 88 140 g 0 154 97 10 12 31 45 507 13 8 177 81 t 0 123 159 482 18 18 354 5 483 17 135 188

oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)
; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=3/3; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.850289; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=10; shift=1; ncol=11; -raAAATTGwa ; Alignment reference a 0 367 519 903 902 904 0 2 0 334 345 c 0 99 139 0 0 0 0 0 0 185 169 g 0 226 165 0 0 0 0 0 904 138 165 t 0 212 81 1 2 0 904 902 0 247 225

oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2 versus oligos_6nt_mkv3_m2; m=1/2; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -raAAATTGwa ; cor=; Ncor= a 0 367 519 903 902 904 0 2 0 334 345 c 0 99 139 0 0 0 0 0 0 185 169 g 0 226 165 0 0 0 0 0 904 138 165 t 0 212 81 1 2 0 904 902 0 247 225

oligos_7nt_mkv4_m4_shift0 (oligos_7nt_mkv4_m4)
; oligos_6nt_mkv3_m2 versus oligos_7nt_mkv4_m4; m=2/2; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.886817; waAAAATTGwa ; cor=; Ncor= a 185 259 579 570 555 585 0 15 0 238 242 c 119 66 1 3 5 0 2 0 0 97 92 g 89 139 0 1 0 0 0 0 585 89 127 t 192 121 5 11 25 0 583 570 0 161 124

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; wrhTACaGTAry ; Alignment reference a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m1; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; wrhTACaGTAry ; cor=; Ncor= a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m1 versus oligos_7nt_mkv4_m3; m=2/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.939149; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219
oligos_6nt_mkv3_m3_rc_shift1 (oligos_6nt_mkv3_m3_rc)				; oligos_7nt_mkv4_m1 versus oligos_6nt_mkv3_m3_rc; m=3/3; ncol2=11; w=0; offset=1; strand=R; shift=1; score=0.913848; -ahTACAGTAwy ; cor=; Ncor= a 0 245 188 27 593 20 490 46 32 599 224 162 c 0 107 176 8 23 626 46 32 13 12 110 185 g 0 155 108 8 27 10 46 579 11 5 165 86 t 0 167 202 631 31 18 92 17 618 58 175 241

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; dryTACcGTArt ; Alignment reference a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)				; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1)				; oligos_7nt_mkv4_m3 versus oligos_7nt_mkv4_m1; m=2/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.939149; wrhTACaGTAry ; cor=; Ncor= a 193 188 135 17 483 5 354 18 18 482 159 123 c 55 81 177 8 13 507 45 31 12 10 97 154 g 125 140 88 7 23 8 44 475 4 4 151 56 t 163 127 136 504 17 16 93 12 502 40 129 203
oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)				; oligos_7nt_mkv4_m3 versus oligos_6nt_mkv3_m3; m=3/3; ncol2=11; w=0; offset=1; strand=D; shift=1; score=0.850289; -rwTACTGTAdt ; cor=; Ncor= a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -rwTACTGTAdt ; Alignment reference a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245
oligos_6nt_mkv3_m3_shift1 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3 versus oligos_6nt_mkv3_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -rwTACTGTAdt ; cor=; Ncor= a 0 241 175 58 618 17 92 18 31 631 202 167 c 0 86 165 5 11 579 46 10 27 8 108 155 g 0 185 110 12 13 32 46 626 23 8 176 107 t 0 162 224 599 32 46 490 20 593 27 188 245
oligos_7nt_mkv4_m1_rc_shift1 (oligos_7nt_mkv4_m1_rc)				; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m1_rc; m=2/3; ncol2=12; w=0; offset=0; strand=R; shift=1; score=0.913848; -ryTACtGTAdy ; cor=; Ncor= a 0 203 129 40 502 12 93 16 17 504 136 127 c 0 56 151 4 4 475 44 8 23 7 88 140 g 0 154 97 10 12 31 45 507 13 8 177 81 t 0 123 159 482 18 18 354 5 483 17 135 188
oligos_7nt_mkv4_m3_shift0 (oligos_7nt_mkv4_m3)				; oligos_6nt_mkv3_m3 versus oligos_7nt_mkv4_m3; m=3/3; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.850289; dryTACcGTArt ; cor=; Ncor= a 167 207 102 24 443 4 92 11 29 456 161 91 c 64 52 132 5 28 463 261 5 8 22 88 119 g 136 134 97 6 9 7 45 468 13 0 141 61 t 123 97 159 455 10 16 92 6 440 12 100 219