rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_query_matrices.homer -from homer -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/hsc_lincorr_combined_dedup_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/hsc_lincorr_combined_dedup_input_motifs_processed_1.tf -from tf -to transfac -prefix_id hsc_lincorr_combined_dedup -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/hsc_lincorr_combined_dedup_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/hsc_lincorr_combined_dedup_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0.6_Ncor_0.4_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/cluster_17_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m17_homer_17.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m22_homer_22.BBCTTATCTS_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m12_homer_12.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m13_homer_13.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m58_homer_58.RTTATGYAAB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m77_homer_77.ATTGCGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m14_homer_14.TGGCAGTTGG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m20_homer_20.GGCVGTTR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m17_homer_17.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m22_homer_22.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m12_homer_12.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m13_homer_13.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145223_HLZ4g8


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145223_5mHEJu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145223_gmiz3J


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145223_SGAafO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145223_Bg923u


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m75_homer_75.VTTACGTAAYNNNNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m58_homer_58.RTTATGYAAB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m77_homer_77.ATTGCGCAAC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m25_homer_25.AGATAASR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m17_homer_17.SAGATAAGRV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m22_homer_22.BBCTTATCTS_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m12_homer_12.YCTTATCTBN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m13_homer_13.NBWGATAAGR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145224_FLkV1S


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145224_2x7Qd9


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m44_homer_44.AVCAGCTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m54_homer_54.ACCATCTGTT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145225_RCEENH


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m66_homer_66.CCATTGTTNY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m62_homer_62.TWGTCTGV_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices_temp.tf -from tf -to tf  -attr name cluster_14 -attr accession cluster_14 -set_attr merged_AC 'hsc_lincorr_combined_dedup:::homer_62.TWGTCTGV' -set_attr merged_ID 'homer_62.TWGTCTGV' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices_temp.tf -from tf -to tf  -attr name cluster_13 -attr accession cluster_13 -set_attr merged_AC 'hsc_lincorr_combined_dedup:::homer_66.CCATTGTTNY' -set_attr merged_ID 'homer_66.CCATTGTTNY' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_14/cluster_14_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_13/cluster_13_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m74_homer_74.AGGCCTAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m45_homer_45.SGTCACGTGR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m56_homer_56.SCCTAGCAACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices_temp.tf -from tf -to tf  -attr name cluster_15 -attr accession cluster_15 -set_attr merged_AC 'hsc_lincorr_combined_dedup:::homer_74.AGGCCTAG' -set_attr merged_ID 'homer_74.AGGCCTAG' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf  -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'hsc_lincorr_combined_dedup:::homer_45.SGTCACGTGR' -set_attr merged_ID 'homer_45.SGTCACGTGR' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf  -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'hsc_lincorr_combined_dedup:::homer_56.SCCTAGCAACAG' -set_attr merged_ID 'homer_56.SCCTAGCAACAG' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_15/cluster_15_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m37_homer_37.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m41_homer_41.NNATGASTCATH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m38_homer_38.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m39_homer_39.DATGASTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m51_homer_51.GCTGTGGTTW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m57_homer_57.AAACCACARM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m42_homer_42.SAAACCACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m51_homer_51.GCTGTGGTTW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m57_homer_57.AAACCACARM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m53_homer_53.NWAACCACADNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m42_homer_42.SAAACCACAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m51_homer_51.GCTGTGGTTW_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m57_homer_57.AAACCACARM_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_hioka2


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_z1vD09


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_VUVJ8S


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_KyCiPZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_h5kZFF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_8ewqi8


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_PkYgrH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_I9hq7B


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145228_sYvASl


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m29_homer_29.AWWWTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m73_homer_73.AWWNTGCTGAGTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m35_homer_35.GAAAGTGAAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m48_homer_48.AGTTTCASTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m31_homer_31.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m38_homer_38.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m39_homer_39.DATGASTCAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_GIiC37


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_pnSCfB


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_WBUrhM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_TcO9QM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_DJs68b


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145229_yfmRT1


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m30_homer_30.CAAAGGTCAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m69_homer_69.TTGAMCTTTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m18_homer_18.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m76_homer_76.TGCTGACTCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m52_homer_52.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m37_homer_37.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m41_homer_41.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m52_homer_52.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_u8cVJY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_XSiIvk


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_2zjmGC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_WzWGAC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_oHLAu9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_Qdj3JU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145230_yhXOcq


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m65_homer_65.CARRGKBCAAAGTYCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m30_homer_30.CAAAGGTCAG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m69_homer_69.TTGAMCTTTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m40_homer_40.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m43_homer_43.GAAASYGAAASY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m35_homer_35.GAAAGTGAAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m48_homer_48.AGTTTCASTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m31_homer_31.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m38_homer_38.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m39_homer_39.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m37_homer_37.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m41_homer_41.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m52_homer_52.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m18_homer_18.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m76_homer_76.TGCTGACTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m31_homer_31.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m38_homer_38.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m39_homer_39.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m37_homer_37.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m41_homer_41.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m52_homer_52.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m29_homer_29.AWWWTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m73_homer_73.AWWNTGCTGAGTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m18_homer_18.TGCTGAGTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m76_homer_76.TGCTGACTCA_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m31_homer_31.VTGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m38_homer_38.RATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m39_homer_39.DATGASTCAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m37_homer_37.NDATGASTCAYN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m41_homer_41.NNATGASTCATH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m52_homer_52.GGATGACTCATC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m46_homer_46.NATGASTCABNN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m36_homer_36.DATGASTCATHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m47_homer_47.GATGASTCATCN_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_cFJJx1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_vSbRnR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_VWDAMi


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_MWGBME


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_HVFXuM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_udI2EQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145231_XCKCO9


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m43_homer_43.GAAASYGAAASY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m35_homer_35.GAAAGTGAAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m48_homer_48.AGTTTCASTTTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m40_homer_40.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145232_3KeXRD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145232_2b516s


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145232_XxVhFM


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m24_homer_24.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m28_homer_28.RGKGGGCGGAGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m26_homer_26.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m61_homer_61.DGGGYGKGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m50_homer_50.GGGGGAATCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m64_homer_64.VGGGRATTYCCC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m24_homer_24.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m28_homer_28.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m26_homer_26.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m61_homer_61.DGGGYGKGGC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m55_homer_55.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m59_homer_59.NYTTCCWGGAAR_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_J5uOk0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_Yfog4n


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_R1DXuj


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_1pHqxm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_uS8qTt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_ibSyaT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145233_IOFs7l


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m34_homer_34.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m68_homer_68.GGGGGGGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m24_homer_24.RGKGGGCGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m28_homer_28.RGKGGGCGGAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m26_homer_26.YGGCCCCGCCCC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m61_homer_61.DGGGYGKGGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m34_homer_34.CCCCTCCCCCAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m68_homer_68.GGGGGGGG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145234_LV7KXc


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145234_wwBCT1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145234_oYPSI6


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145234_TXrV8b


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145234_pnyOvX


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_21/cluster_3_node_21_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_20/cluster_3_node_20_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m21_homer_21.CYTGGCABNSTGCCAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m63_homer_63.CTGGCAGSCTGCCA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m70_homer_70.MGGAAGTGAAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m43_homer_43.GAAASYGAAASY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m35_homer_35.GAAAGTGAAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m48_homer_48.AGTTTCASTTTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m40_homer_40.AGTTTCAKTTTC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m32_homer_32.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145235_vdHXDJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145235_WtLdAt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_nb_motifs_19.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145235_9fCWdx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145235_Wwv244


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_23/cluster_3_node_23_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_24/cluster_3_node_24_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_22/cluster_3_node_22_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m19_homer_19.GCTATTTTTAGC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m67_homer_67.CYAAAAATAG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m49_homer_49.RCAGGATGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m32_homer_32.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m55_homer_55.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m59_homer_59.NYTTCCWGGAAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m49_homer_49.RCAGGATGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m32_homer_32.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m70_homer_70.MGGAAGTGAAAC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m43_homer_43.GAAASYGAAASY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m35_homer_35.GAAAGTGAAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m48_homer_48.AGTTTCASTTTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m33_homer_33.GRAASTGAAAST_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m40_homer_40.AGTTTCAKTTTC_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m55_homer_55.SVYTTCCNGGAARB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m59_homer_59.NYTTCCWGGAAR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m49_homer_49.RCAGGATGTGGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m32_homer_32.AAAGRGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m9_homer_9.MACAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m1_homer_1.ATTTCCTGTN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m23_homer_23.VACAGGAAAT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m60_homer_60.ASWTCCTGBT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m5_homer_5.RACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m15_homer_15.AVCCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m3_homer_3.AACCGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m10_homer_10.ACTTCCKGKT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m27_homer_27.AVCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m11_homer_11.ACVAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m16_homer_16.ANCAGGAAGT_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m7_homer_7.NNAYTTCCTGHN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m8_homer_8.NRYTTCCGGH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m2_homer_2.ACCGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m71_homer_71.HACTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m72_homer_72.NRYTTCCGGY_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m4_homer_4.ACAGGAAGTG_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/hsc_lincorr_combined_dedup_m6_homer_6.AGAGGAAGTG_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145236_kpKSSP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_nb_motifs_20.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145236_6MGjja


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_nb_motifs_22.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145236_ZQng2A


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_nb_motifs_28.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/IC_test_2026-04-12.145236_D6mCDK


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_25/cluster_3_node_25_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_27/cluster_3_node_27_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_26/cluster_3_node_26_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_portable_logo_tree.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix hsc_lincorr_combined_dedup $RSAT/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_query_matrices.homer homer -hclust_method average -calc sum -title hsc_lincorr_combined_dedup -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering
; Program version       	1.05
; Number of matrices          	77
; Output files
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_summary_table.tab
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary_3.html
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_figures/heatmap.pdf
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary_2.html
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_cluster_root_motifs.tf
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_trees/tree.json
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/number_of_clusters.tab
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_motif_richness.tsv
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_log.txt
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_portable_logo_tree.html
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_motif_names.html
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_motif_names.tab
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_cluster_IDs.txt
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/collection_heatmap_order.tab
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data/input_motifs_processed.tf
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_SUMMARY.html
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_root_motifs_table.tab
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_Rlog.txt
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_archive.zip
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters.html
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_dynamic_coverage_heatmap.html
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_motif_richness_barplot.html
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/alignment_table.tab
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters.tab
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/alignment_table.html
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/intermediate_alignments.tab
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/collection_heatmap_tab.tsv
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_figures/heatmap.jpg
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_central_motifs_IDs_temporal.tab
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/internal_nodes_attributes.tab
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_logo_tree.html
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_errors.txt
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/clusters_summary_percent_table.tab
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_SUMMARY_TEMP.html
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_central_motifs_transfac.tf
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_radial_tree.html
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/distance_table.html
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_central_motifs_IDs.tab
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_html/pairwise_compa.html
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_temporary.html
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_small_forest.html
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_dynamic_heatmap.html
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_coverage_json
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/pairwise_compa.tab
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_html/index.html
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_tables/distance_table.tab
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_hexa_colors.txt
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_reference_collection.tf
; Directories
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2026/04/12/matrix-clustering_2026-04-12.145203_036hSY/matrix-clustering_data
; Host name	rsat
; Job started	2026-04-12.145204
; Job done	2026-04-12.145241
; Seconds	1.29
;	user	1.29
;	system	0.67
;	cuser	68.13
;	csystem	17.87