One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
 |
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; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; stCTTGTTCrk
; Alignment reference
a 1 1 0 0 1 0 0 0 0 3 0
c 2 0 6 0 0 0 0 0 6 0 0
g 2 1 0 0 0 6 0 1 0 2 3
t 1 4 0 6 5 0 6 5 0 1 3
|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
|
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; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; stCTTGTTCrk
; cor=; Ncor=
a 1 1 0 0 1 0 0 0 0 3 0
c 2 0 6 0 0 0 0 0 6 0 0
g 2 1 0 0 0 6 0 1 0 2 3
t 1 4 0 6 5 0 6 5 0 1 3
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2) |
 |
|
|
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; nvAGCTWAAmb
; Alignment reference
a 1 1 4 0 0 0 3 4 4 2 0
c 1 1 0 0 4 0 0 0 0 2 1
g 1 2 0 4 0 0 0 0 0 0 1
t 1 0 0 0 0 4 1 0 0 0 2
|
| oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2) |
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; oligos_7nt_mkv1_m2 versus oligos_7nt_mkv1_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; nvAGCTWAAmb
; cor=; Ncor=
a 1 1 4 0 0 0 3 4 4 2 0
c 1 1 0 0 4 0 0 0 0 2 1
g 1 2 0 4 0 0 0 0 0 0 1
t 1 0 0 0 0 4 1 0 0 0 2
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
 |
|
|
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; crCCTTCAmm
; Alignment reference
a 1 2 0 0 0 0 0 5 2 2
c 2 1 5 5 0 0 5 0 2 2
g 1 2 0 0 0 0 0 0 1 0
t 1 0 0 0 5 5 0 0 0 1
|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
|
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; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; crCCTTCAmm
; cor=; Ncor=
a 1 2 0 0 0 0 0 5 2 2
c 2 1 5 5 0 0 5 0 2 2
g 1 2 0 0 0 0 0 0 1 0
t 1 0 0 0 5 5 0 0 0 1
|