; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	1	1	0	0	1	0	0	0	0	3	0
c	2	0	6	0	0	0	0	0	6	0	0
g	2	1	0	0	0	6	0	1	0	2	3
t	1	4	0	6	5	0	6	5	0	1	3
//
; Sites	6
>site_0
GTCTTGTTCAG
>site_1
CTCTTGTTCAG
>site_2
ATCTTGTTCTT
>site_3
CTCTTGTGCGT
>site_4
GACTAGTTCAG
>site_5
TGCTTGTTCGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	1	1	4	0	0	0	3	4	4	2	0
c	1	1	0	0	4	0	0	0	0	2	1
g	1	2	0	4	0	0	0	0	0	0	1
t	1	0	0	0	0	4	1	0	0	0	2
//
; Sites	4
>site_0
GGAGCTAAAAT
>site_1
CCAGCTAAACG
>site_2
TAAGCTAAAAT
>site_3
AGAGCTTAACC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/18/peak-motifs.2026-04-18.213021_2026-04-18.213021_vSYVkW/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2026-04-18.213030
; Job done	2026-04-18.213031
; Seconds	0.12
;	user	0.12
;	system	0.01
;	cuser	0.45
;	csystem	0.08
