AC  oligos_6nt_mkv1_m1
XX
ID  oligos_6nt_mkv1_m1
XX
DE  yyGAACCGAks
P0           a         c         g         t
1            0         3         0         3
2            0         3         0         3
3            0         0         6         0
4            6         0         0         0
5            6         0         0         0
6            0         6         0         0
7            0         6         0         0
8            0         0         6         0
9            6         0         0         0
10           0         0         3         3
11           0         3         3         0
XX
BA  6 sequences
XX
BS  TTGAACCGAGG; site_0; 1; 11; 0; p
BS  TTGAACCGAGG; site_1; 1; 11; 0; p
BS  TTGAACCGAGG; site_2; 1; 11; 0; p
BS  CCGAACCGATC; site_3; 1; 11; 0; p
BS  CCGAACCGATC; site_4; 1; 11; 0; p
BS  CCGAACCGATC; site_5; 1; 11; 0; p
CC  program: feature
CC  matrix.nb: 1
CC  matrix.nb: 1
CC  sites: 6
CC  consensus.strict: ccGAACCGAgc
CC  consensus.strict.rc: GCTCGGTTCGG
CC  consensus.IUPAC: yyGAACCGAks
CC  consensus.IUPAC.rc: SMTCGGTTCRR
CC  consensus.regexp: [ct][ct]GAACCGA[gt][cg]
CC  consensus.regexp.rc: [CG][AC]TCGGTTC[AG][AG]
XX
//
AC  oligos_6nt_mkv1_m2
XX
ID  oligos_6nt_mkv1_m2
XX
DE  CCCGCTACCG
P0           a         c         g         t
1            0         2         0         0
2            0         2         0         0
3            0         2         0         0
4            0         0         2         0
5            0         2         0         0
6            0         0         0         2
7            2         0         0         0
8            0         2         0         0
9            0         2         0         0
10           0         0         2         0
XX
BA  2 sequences
XX
BS  CCCGCTACCG; site_0; 1; 10; 0; p
BS  CCCGCTACCG; site_1; 1; 10; 0; p
CC  program: feature
CC  matrix.nb: 2
CC  matrix.nb: 2
CC  sites: 2
CC  consensus.strict: CCCGCTACCG
CC  consensus.strict.rc: CGGTAGCGGG
CC  consensus.IUPAC: CCCGCTACCG
CC  consensus.IUPAC.rc: CGGTAGCGGG
CC  consensus.regexp: CCCGCTACCG
CC  consensus.regexp.rc: CGGTAGCGGG
XX
//
AC  oligos_6nt_mkv1_m3
XX
ID  oligos_6nt_mkv1_m3
XX
DE  GAGGAGTGAGATTA
P0           a         c         g         t
1            0         0         3         0
2            3         0         0         0
3            0         0         3         0
4            0         0         3         0
5            3         0         0         0
6            0         0         3         0
7            0         0         0         3
8            0         0         3         0
9            3         0         0         0
10           0         0         3         0
11           3         0         0         0
12           0         0         0         3
13           0         0         0         3
14           3         0         0         0
XX
BA  3 sequences
XX
BS  GAGGAGTGAGATTA; site_0; 1; 14; 0; p
BS  GAGGAGTGAGATTA; site_1; 1; 14; 0; p
BS  GAGGAGTGAGATTA; site_2; 1; 14; 0; p
CC  program: feature
CC  matrix.nb: 3
CC  matrix.nb: 3
CC  sites: 3
CC  consensus.strict: GAGGAGTGAGATTA
CC  consensus.strict.rc: TAATCTCACTCCTC
CC  consensus.IUPAC: GAGGAGTGAGATTA
CC  consensus.IUPAC.rc: TAATCTCACTCCTC
CC  consensus.regexp: GAGGAGTGAGATTA
CC  consensus.regexp.rc: TAATCTCACTCCTC
XX
//
AC  oligos_6nt_mkv1_m5
XX
ID  oligos_6nt_mkv1_m5
XX
DE  vbwCTTTCksy
P0           a         c         g         t
1            2         2         2         0
2            0         2         2         2
3            4         0         0         2
4            0         6         0         0
5            0         0         0         6
6            0         0         0         6
7            0         0         0         6
8            0         6         0         0
9            0         0         2         4
10           0         4         2         0
11           0         2         0         4
XX
BA  6 sequences
XX
BS  GTTCTTTCTGC; site_0; 1; 11; 0; p
BS  GTTCTTTCTGC; site_1; 1; 11; 0; p
BS  CCACTTTCGCT; site_2; 1; 11; 0; p
BS  CCACTTTCGCT; site_3; 1; 11; 0; p
BS  AGACTTTCTCT; site_4; 1; 11; 0; p
BS  AGACTTTCTCT; site_5; 1; 11; 0; p
CC  program: feature
CC  matrix.nb: 4
CC  matrix.nb: 4
CC  sites: 6
CC  consensus.strict: acaCTTTCtct
CC  consensus.strict.rc: AGAGAAAGTGT
CC  consensus.IUPAC: vbwCTTTCksy
CC  consensus.IUPAC.rc: RSMGAAAGWVB
CC  consensus.regexp: [acg][cgt][at]CTTTC[gt][cg][ct]
CC  consensus.regexp.rc: [AG][CG][AC]GAAAG[AT][ACG][CGT]
XX
//
AC  oligos_7nt_mkv1_m1
XX
ID  oligos_7nt_mkv1_m1
XX
DE  CGCCGAACCGATCCGGGACGGC
P0           a         c         g         t
1            0         3         0         0
2            0         0         3         0
3            0         3         0         0
4            0         3         0         0
5            0         0         3         0
6            3         0         0         0
7            3         0         0         0
8            0         3         0         0
9            0         3         0         0
10           0         0         3         0
11           3         0         0         0
12           0         0         0         3
13           0         3         0         0
14           0         3         0         0
15           0         0         3         0
16           0         0         3         0
17           0         0         3         0
18           3         0         0         0
19           0         3         0         0
20           0         0         3         0
21           0         0         3         0
22           0         3         0         0
XX
BA  3 sequences
XX
BS  CGCCGAACCGATCCGGGACGGC; site_0; 1; 22; 0; p
BS  CGCCGAACCGATCCGGGACGGC; site_1; 1; 22; 0; p
BS  CGCCGAACCGATCCGGGACGGC; site_2; 1; 22; 0; p
CC  program: feature
CC  matrix.nb: 1
CC  matrix.nb: 1
CC  sites: 3
CC  consensus.strict: CGCCGAACCGATCCGGGACGGC
CC  consensus.strict.rc: GCCGTCCCGGATCGGTTCGGCG
CC  consensus.IUPAC: CGCCGAACCGATCCGGGACGGC
CC  consensus.IUPAC.rc: GCCGTCCCGGATCGGTTCGGCG
CC  consensus.regexp: CGCCGAACCGATCCGGGACGGC
CC  consensus.regexp.rc: GCCGTCCCGGATCGGTTCGGCG
XX
//
AC  oligos_7nt_mkv1_m3
XX
ID  oligos_7nt_mkv1_m3
XX
DE  msGAGAGAArG
P0           a         c         g         t
1            2         2         0         0
2            0         2         2         0
3            0         0         4         0
4            4         0         0         0
5            0         0         4         0
6            4         0         0         0
7            0         0         4         0
8            4         0         0         0
9            4         0         0         0
10           2         0         2         0
11           0         0         4         0
XX
BA  4 sequences
XX
BS  ACGAGAGAAGG; site_0; 1; 11; 0; p
BS  ACGAGAGAAGG; site_1; 1; 11; 0; p
BS  CGGAGAGAAAG; site_2; 1; 11; 0; p
BS  CGGAGAGAAAG; site_3; 1; 11; 0; p
CC  program: feature
CC  matrix.nb: 2
CC  matrix.nb: 2
CC  sites: 4
CC  consensus.strict: acGAGAGAAaG
CC  consensus.strict.rc: CTTTCTCTCGT
CC  consensus.IUPAC: msGAGAGAArG
CC  consensus.IUPAC.rc: CYTTCTCTCSK
CC  consensus.regexp: [ac][cg]GAGAGAA[ag]G
CC  consensus.regexp.rc: C[CT]TTCTCTC[CG][GT]
XX
//
AC  oligos_7nt_mkv1_m4
XX
ID  oligos_7nt_mkv1_m4
XX
DE  CCGGAAGGCACTC
P0           a         c         g         t
1            0         2         0         0
2            0         2         0         0
3            0         0         2         0
4            0         0         2         0
5            2         0         0         0
6            2         0         0         0
7            0         0         2         0
8            0         0         2         0
9            0         2         0         0
10           2         0         0         0
11           0         2         0         0
12           0         0         0         2
13           0         2         0         0
XX
BA  2 sequences
XX
BS  CCGGAAGGCACTC; site_0; 1; 13; 0; p
BS  CCGGAAGGCACTC; site_1; 1; 13; 0; p
CC  program: feature
CC  matrix.nb: 3
CC  matrix.nb: 3
CC  sites: 2
CC  consensus.strict: CCGGAAGGCACTC
CC  consensus.strict.rc: GAGTGCCTTCCGG
CC  consensus.IUPAC: CCGGAAGGCACTC
CC  consensus.IUPAC.rc: GAGTGCCTTCCGG
CC  consensus.regexp: CCGGAAGGCACTC
CC  consensus.regexp.rc: GAGTGCCTTCCGG
XX
//