RSAT - compare-matrices result

Analysis: result (21/04/2026 09:24)

Command: compare-matrices -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/compare-matrices_2026-04-21.092437_5FrWdl/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/tmp/www-data/2026/04/21/compare-matrices_2026-04-21.092437_5FrWdl/custom_motif_file.tf -format2 transfac -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/04/21/compare-matrices_2026-04-21.092437_5FrWdl/compare-matrices.tab

Input files

Type	File
file1	compare-matrices_query_matrices.transfac
file2	custom_motif_file.tf

Output files

Type	File
match_table_txt	compare-matrices.tab
match_table_html	compare-matrices.html
alignments_1ton	compare-matrices_alignments_1ton.tab
alignments_1ton_html	compare-matrices_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	compare-matrices_aligned_logos