; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/04/21/dna-pattern_2026-04-21.133609_qMHffZ.pat -i $RSAT/public_html/tmp/www-data/2026/04/21/tmp_sequence_2026-04-21.133609_fEoD9K.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/04/21/tmp_sequence_2026-04-21.133609_fEoD9K.fasta
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/04/21/dna-pattern_2026-04-21.133609_qMHffZ.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	limits
;                     	sites
; Patterns
; 	seq	id	score
; 	GCCGCC	GCC-box	1
; 	CCGAC	DRE	1
; 	A/GCCGAC	CRT	1
; 	GAAATTTC	VWRE	1
; 	CACCG	CEI	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
START_END	DR	-	1620pro	-2000	-1	-	0.00
DRE	D	CCGAC	1620pro	-1205	-1201	tccaCCGACccga	1.00
CEI	D	CACCG	1620pro	-1218	-1214	tatcCACCGggta	1.00
CEI	D	CACCG	1620pro	-1207	-1203	tatcCACCGaccc	1.00
; Host name	rsat
; Job started	2026-04-21.133609
; Job done	2026-04-21.133609
; Seconds	0.09
;	user	0.09
;	system	0.01
;	cuser	0
;	csystem	0