; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095539_9pJODJ.tab -o $RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095539_9pJODJ.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095539_9pJODJ.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095539_9pJODJ.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	35
;

; assembly # 1	seed: cacgtga	15 assembled patterns	length 10
;   alignt	   rev_cpl	score
gtcacgt...	...acgtgac	2.22
gtcacgtg..	..cacgtgac	2.09
gtcacg....	....cgtgac	0.29
.tcacgtg..	..cacgtga.	10.78
.tcacgt...	...acgtga.	4.85
..cacgtga.	.tcacgtg..	10.78
..cacgtg..	..cacgtg..	9.00
..cacgtgac	gtcacgtg..	2.09
..ca......	......tg..	1.90
...acgtga.	.tcacgt...	4.85
...ac.....	.....gt...	3.03
...acgtgac	gtcacgt...	2.22
....cgtgac	gtcacg....	0.29
.....gt...	...ac.....	3.03
......tg..	..ca......	1.90
gtcacgtgac	gtcacgtgac	10.78	best consensus

; assembly # 2	seed: aactgtgg	16 assembled patterns	length 12
;     alignt	     rev_cpl	score
ca..........	..........tg	1.90
.aactgtgg...	...ccacagtt.	4.25
.aactgtg....	....cacagtt.	3.42
.aactgt.....	.....acagtt.	0.63
..actgtgg...	...ccacagt..	3.04
..ac........	........gt..	3.03
..actgtg....	....cacagt..	2.68
..actgtggc..	..gccacagt..	0.79
...ctgtgg...	...ccacag...	3.68
...ctgtggc..	..gccacag...	1.40
....tgtggc..	..gccaca....	3.40
....tg......	......ca....	1.90
....tgtggct.	.agccaca....	0.50
....tgtggctt	aagccaca....	0.29
.....gt.....	.....ac.....	3.03
.....gtggct.	.agccac.....	0.33
caactgtggctt	aagccacagttg	4.25	best consensus

; assembly # 3	seed: gcacgtga	15 assembled patterns	length 10
;   alignt	   rev_cpl	score
tgcacg....	....cgtgca	1.42
tgcacgt...	...acgtgca	0.01
.gcacgtga.	.tcacgtgc.	2.34
.gcacgtg..	..cacgtgc.	1.47
.gcacgt...	...acgtgc.	0.10
..cacgtga.	.tcacgtg..	10.78
..cacgtg..	..cacgtg..	9.00
..cacgtgac	gtcacgtg..	2.09
..ca......	......tg..	1.90
...acgtga.	.tcacgt...	4.85
...ac.....	.....gt...	3.03
...acgtgac	gtcacgt...	2.22
....cgtgac	gtcacg....	0.29
.....gt...	...ac.....	3.03
......tg..	..ca......	1.90
tgcacgtgac	gtcacgtgca	10.78	best consensus

; assembly # 4	seed: cacgtgaa	13 assembled patterns	length 10
;   alignt	   rev_cpl	score
gtcacgt...	...acgtgac	2.22
gtcacgtg..	..cacgtgac	2.09
gtcacg....	....cgtgac	0.29
.tcacgtg..	..cacgtga.	10.78
.tcacgt...	...acgtga.	4.85
..cacgtga.	.tcacgtg..	10.78
..cacgtg..	..cacgtg..	9.00
..ca......	......tg..	1.90
..cacgtgaa	ttcacgtg..	1.70
...acgtga.	.tcacgt...	4.85
...ac.....	.....gt...	3.03
.....gt...	...ac.....	3.03
......tg..	..ca......	1.90
gtcacgtgaa	ttcacgtgac	10.78	best consensus

; assembly # 5	seed: aaactgtg	17 assembled patterns	length 13
;      alignt	      rev_cpl	score
ca...........	...........tg	1.90
.aaactgtg....	....cacagttt.	1.37
..aactgtgg...	...ccacagtt..	4.25
..aactgtg....	....cacagtt..	3.42
..aactgt.....	.....acagtt..	0.63
...actgtgg...	...ccacagt...	3.04
...ac........	........gt...	3.03
...actgtg....	....cacagt...	2.68
...actgtggc..	..gccacagt...	0.79
....ctgtgg...	...ccacag....	3.68
....ctgtggc..	..gccacag....	1.40
.....tgtggc..	..gccaca.....	3.40
.....tg......	......ca.....	1.90
.....tgtggct.	.agccaca.....	0.50
.....tgtggctt	aagccaca.....	0.29
......gt.....	.....ac......	3.03
......gtggct.	.agccac......	0.33
caaactgtggctt	aagccacagtttg	4.25	best consensus

; assembly # 6	seed: atcacgtg	13 assembled patterns	length 10
;   alignt	   rev_cpl	score
atcacgtg..	..cacgtgat	0.68
.tcacgtg..	..cacgtga.	10.78
.tcacgt...	...acgtga.	4.85
..cacgtga.	.tcacgtg..	10.78
..cacgtg..	..cacgtg..	9.00
..cacgtgac	gtcacgtg..	2.09
..ca......	......tg..	1.90
...acgtga.	.tcacgt...	4.85
...ac.....	.....gt...	3.03
...acgtgac	gtcacgt...	2.22
....cgtgac	gtcacg....	0.29
.....gt...	...ac.....	3.03
......tg..	..ca......	1.90
atcacgtgac	gtcacgtgat	10.78	best consensus

; assembly # 7	seed: agtcat	6 assembled patterns	length 8
; alignt	 rev_cpl	score
tagtcat.	.atgacta	0.48
tagtca..	..tgacta	0.46
.agtcat.	.atgact.	0.59
..gt....	....ac..	3.03
....ca..	..tg....	1.90
......tg	ca......	1.90
tagtcatg	catgacta	3.03	best consensus

; assembly # 8	seed: tcatgaa	8 assembled patterns	length 11
;    alignt	    rev_cpl	score
tagtcat....	....atgacta	0.48
tagtca.....	.....tgacta	0.46
.agtcat....	....atgact.	0.59
..gt.......	.......ac..	3.03
...tcatgaa.	.ttcatga...	0.34
....ca.....	.....tg....	1.90
......tg...	...ca......	1.90
.........ac	gt.........	3.03
tagtcatgaac	gttcatgacta	3.03	best consensus

; assembly # 9	seed: cgcgca	6 assembled patterns	length 10
;   alignt	   rev_cpl	score
ac........	........gt	3.03
.cgcgca...	...tgcgcg.	0.25
.cgcgcat..	..atgcgcg.	0.15
.....ca...	...tg.....	1.90
.......tg.	.ca.......	1.90
........gt	ac........	3.03
acgcgcatgt	acatgcgcgt	3.03	best consensus

; assembly # 10	seed: gactca	16 assembled patterns	length 13
;      alignt	      rev_cpl	score
gtcacgt......	......acgtgac	2.22
gtcacgtg.....	.....cacgtgac	2.09
gtcacg.......	.......cgtgac	0.29
.tcacgtg.....	.....cacgtga.	10.78
.tcacgt......	......acgtga.	4.85
..cacgtga....	....tcacgtg..	10.78
..cacgtg.....	.....cacgtg..	9.00
..cacgtgac...	...gtcacgtg..	2.09
...acgtga....	....tcacgt...	4.85
...acgtgac...	...gtcacgt...	2.22
....cgtgac...	...gtcacg....	0.29
.....gt......	......ac.....	3.03
......tg.....	.....ca......	1.90
.......gactca	tgagtc.......	0.05
........ac...	...gt........	3.03
...........ca	tg...........	1.90
gtcacgtgactca	tgagtcacgtgac	10.78	best consensus
; Host name	rsat
; Job started	2026-04-21.095544
; Job done	2026-04-21.095548
; Seconds	3.54
;	user	3.54
;	system	0
;	cuser	0
;	csystem	0