; pattern-assembly  -v 1 -subst 1 -toppat 50 -1str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz.tab -o $RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz.asmb
; Input score column           	8
; Output score column          	0
; Strand-sensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	26
;

; assembly # 1	seed: cacgtg	14 assembled patterns	length 11
;    alignt	score
tttcacgt...	0.28
.ttcacgtg..	1.49
..tcacgtg..	4.35
..tcacgt...	1.91
..tc.......	0.60
...cacgtg..	8.83
...cacgtga.	5.45
...ca......	3.23
...cacgtgac	2.17
....acgtga.	2.24
....acgtgac	1.59
....ac.....	0.82
.....cgtgac	0.23
......gt...	1.21
tttcacgtgac	8.83	best consensus

; assembly # 2	seed: ccacag	11 assembled patterns	length 10
;   alignt	score
gccaca....	2.94
gccacag...	1.63
gccacagt..	0.22
.ccacag...	3.79
.ccacagtt.	2.66
.ccacagt..	1.01
..ca......	3.23
..cacagtt.	0.17
...ac.....	0.82
......gt..	1.21
........tc	0.60
gccacagttc	3.79	best consensus

; assembly # 3	seed: gcacgtga	11 assembled patterns	length 9
;  alignt	score
gcacgtga.	0.98
gcacgtg..	0.39
.cacgtg..	8.83
.cacgtga.	5.45
.ca......	3.23
.cacgtgac	2.17
..acgtga.	2.24
..acgtgac	1.59
..ac.....	0.82
...cgtgac	0.23
....gt...	1.21
gcacgtgac	8.83	best consensus

; assembly # 4	seed: actgtg	5 assembled patterns	length 8
; alignt	score
tc......	0.60
.ca.....	3.23
..ac....	0.82
..actgtg	0.48
.....gt.	1.21
tcactgtg	3.23	best consensus

; assembly # 5	seed: agtcaa	5 assembled patterns	length 7
;alignt	score
agtcaa.	0.23
.gt....	1.21
..tc...	0.60
...ca..	3.23
.....ac	0.82
agtcaac	3.23	best consensus

; assembly # 6	seed: ctcccggt	5 assembled patterns	length 10
;   alignt	score
ca........	3.23
.ac.......	0.82
..ctcccggt	0.22
...tc.....	0.60
........gt	1.21
cactcccggt	3.23	best consensus
; Host name	rsat
; Job started	2026-04-21.095631
; Job done	2026-04-21.095631
; Seconds	0.66
;	user	0.66
;	system	0
;	cuser	0
;	csystem	0