; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/04/21/tmp_sequence_2026-04-21.095625_Jui4eP.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -nogrouprc -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Saccharomyces_cerevisiae -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Quick counting mode          
; Detection of over-represented words (right-tail test)
; Oligomer length              	6
; Input file                   	$RSAT/public_html/tmp/www-data/2026/04/21/tmp_sequence_2026-04-21.095625_Jui4eP.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/04/21/oligo-analysis_2026-04-21.095625_d1Zgoz_6nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model             	upstream-noorf
; Organism                     	Saccharomyces_cerevisiae
; Background estimation method 	Frequency file
; Expected frequency file      	$RSAT/public_html/data/genomes/Saccharomyces_cerevisiae/oligo-frequencies/6nt_upstream-noorf_Saccharomyces_cerevisiae-noov-1str.freq
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	2.44140625e-06
; Sequence type                	DNA
; Nb of sequences              	19
; Sum of sequence lengths      	9485
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	9335
; total overlapping occurrences	105
; total non overlapping occ    	9230
; alphabet size                	4
; nb possible oligomers        	4096
; oligomers tested for significance	4096
; Sequences:
;	MET8	463
;	MET32	547
;	MET18	568
;	MET30	177
;	MET28	489
;	MET6	687
;	MET10	338
;	MET13	380
;	MET3	800
;	MET14	800
;	MET1	702
;	MET17	800
;	MET2	481
;	MET4	800
;	MET22	215
;	MET7	250
;	MET31	161
;	MET12	384
;	MET16	443
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	exp_freq       	expected relative frequency
;	4	occ            	observed occurrences
;	5	exp_occ        	expected occurrences
;	6	occ_P          	occurrence probability (binomial)
;	7	occ_E          	E-value for occurrences (binomial)
;	8	occ_sig        	occurrence significance (binomial)
;	9	rank           	rank
;	10	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	11	forbocc        	forbidden positions (to avoid self-overlap)
#seq	id	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc
cacgtg	cacgtg	0.0001545691910	17	1.44	3.6e-13	1.5e-09	8.83	1	0	85
ccacag	ccacag	0.0001228207836	11	1.15	3.9e-08	1.6e-04	3.79	2	0	55
gccaca	gccaca	0.0001499392149	11	1.40	2.8e-07	1.2e-03	2.94	3	0	55
acgtga	acgtga	0.0001770576460	11	1.65	1.4e-06	5.7e-03	2.24	4	0	55
tcacgt	tcacgt	0.0001919397120	11	1.79	3e-06	1.2e-02	1.91	5	0	55
actgtg	actgtg	0.0001849947478	9	1.73	8e-05	3.3e-01	0.48	6	0	45
agtcaa	agtcaa	0.0002461765743	10	2.30	0.00014	5.8e-01	0.23	7	0	50
cgtgac	cgtgac	0.0000818124243	6	0.76	0.00014	5.9e-01	0.23	8	0	30
; Host name	rsat
; Job started	2026-04-21.095626
; Job done	2026-04-21.095626
; Seconds	0.34
;	user	0.34
;	system	0.03
;	cuser	0.1
;	csystem	0.02