RSAT - peak-motifs result

Analysis: N2-A (21/04/2026 01:49)

peak-motifs  -v 1 -title N2-A -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: atacta (sig=0.84; e-value=0.14) RC: tagtat oligos_6nt_mkv2_m2 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: atactaa (sig=0.65; e-value=0.22) RC: ttagtat oligos_7nt_mkv2_m2 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m3 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=0.84; evalue=0.14 haATACTAaw WTTAGTATTD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor haATACTAaw nhr-33 MA2183.1 D 10 0.7692 0.767 0.590 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor haATACTAaw mex-6 M00651_2.00 R 10 1.0000 0.742 0.742 NA NA ceh-9,mls-2 M02210_2.00 D 10 1.0000 0.706 0.706 NA NA med-1,med-2 M00669_2.00 D 9 0.8182 0.715 0.585 NA NA Total matches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (6.33%) Max nb of predicted sites per peak: 28  (chrIII:13779348-13780729) Mean nb of predicted sites per peak: 13.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_7nt_mkv2_m1	k-mer sig=0.65; evalue=0.22 yaAtACtAAwm KWTTAGTATTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yaAtACtAAwm Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yaAtACtAAwm mex-6 M00651_2.00 R 10 0.9091 0.734 0.667 NA NA alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mls-2,tab-1,unc-4,unc-42,vab-15 M06329_2.00 D 8 0.6667 0.716 0.477 NA NA mef-2 M02745_2.00 D 8 0.5333 0.871 0.464 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (10.13%) Max nb of predicted sites per peak: 48  (chrM:4174-6398) Mean nb of predicted sites per peak: 14.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title N2-A -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl