position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title N2-A -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 79 Sum of sequence lengths 51270 Min sequence length 0 Max sequence length 1000 Average sequence length 648 Possible positions 51191 Sequences: # length ID 1 196 chrI:933488-933684 2 241 chrI:3171652-3171893 3 142 chrI:4017265-4017407 4 283 chrI:4535981-4536264 5 278 chrI:10947904-10948182 6 1000 chrI:15064077-15067549 7 1000 chrI:15064077-15067549 8 1000 chrI:15064077-15067549 9 1000 chrI:15064077-15067549 10 1000 chrI:15064077-15067549 11 1000 chrI:15064077-15067549 12 1000 chrI:15064077-15067549 13 1000 chrI:15064077-15067549 14 1000 chrI:15064077-15067549 15 1000 chrI:15064077-15067549 16 1000 chrI:15064077-15067549 17 1000 chrI:15064077-15067549 18 1000 chrI:15064077-15067549 19 1000 chrI:15064077-15067549 20 1000 chrI:15064077-15067549 21 1000 chrI:15064077-15067549 22 139 chrII:6503647-6503786 23 144 chrII:6508071-6508215 24 144 chrII:8287644-8287788 25 266 chrII:8289294-8289560 26 317 chrII:8291972-8292289 27 137 chrII:10491783-10491920 28 291 chrIII:931397-931688 29 291 chrIII:931397-931688 30 150 chrIII:12497783-12497933 31 1000 chrIII:13779348-13780729 32 1000 chrIII:13779348-13780729 33 1000 chrIII:13779348-13780729 34 1000 chrIII:13779348-13780729 35 1000 chrIII:13779348-13780729 36 1000 chrIII:13779348-13780729 37 1000 chrIII:13779348-13780729 38 328 chrIII:13780949-13781277 39 140 chrIV:2824946-2825086 40 247 chrIV:10943577-10943824 41 247 chrIV:10943577-10943824 42 199 chrIV:10950421-10950620 43 218 chrIV:10984634-10984852 44 138 chrIV:11070994-11071132 45 198 chrIV:15409392-15409590 46 123 chrM:2588-2711 47 1000 chrM:4174-6398 48 1000 chrM:4174-6398 49 1000 chrM:4174-6398 50 1000 chrM:4174-6398 51 1000 chrM:4174-6398 52 1000 chrM:4174-6398 53 1000 chrM:4174-6398 54 1000 chrM:4174-6398 55 1000 chrM:4174-6398 56 1000 chrM:4174-6398 57 1000 chrM:4174-6398 58 1000 chrM:4174-6398 59 952 chrM:7083-8035 60 952 chrM:7083-8035 61 952 chrM:7083-8035 62 952 chrM:7083-8035 63 484 chrM:9406-9890 64 484 chrM:9406-9890 65 333 chrM:10374-10707 66 333 chrM:10374-10707 67 586 chrV:265296-265882 68 586 chrV:265296-265882 69 586 chrV:265296-265882 70 699 chrV:5284589-5285288 71 699 chrV:5284589-5285288 72 422 chrV:17121988-17122410 73 415 chrV:17127817-17128232 74 415 chrV:17127817-17128232 75 183 chrV:18287436-18287619 76 228 chrX:1643814-1644042 77 215 chrX:7077661-7077876 78 321 chrX:14908141-14908462 79 616 chrX:14908591-14909207 Oligonucleotide statistics: Total occurrences 8536 Position interval parameters: Position interval 20 Number of windows 50 Total positions 51191 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 35 700 2 -24 [-479,-460] -469.5 39 764 3 -23 [-459,-440] -449.5 39 780 4 -22 [-439,-420] -429.5 39 780 5 -21 [-419,-400] -409.5 39 780 6 -20 [-399,-380] -389.5 39 780 7 -19 [-379,-360] -369.5 39 780 8 -18 [-359,-340] -349.5 41 800 9 -17 [-339,-320] -329.5 41 820 10 -16 [-319,-300] -309.5 42 828 11 -15 [-299,-280] -289.5 45 882 12 -14 [-279,-260] -269.5 45 900 13 -13 [-259,-240] -249.5 47 904 14 -12 [-239,-220] -229.5 47 940 15 -11 [-219,-200] -209.5 50 968 16 -10 [-199,-180] -189.5 50 1000 17 -9 [-179,-160] -169.5 54 1019 18 -8 [-159,-140] -149.5 58 1113 19 -7 [-139,-120] -129.5 63 1203 20 -6 [-119,-100] -109.5 66 1292 21 -5 [-99,-80] -89.5 70 1390 22 -4 [-79,-60] -69.5 79 1493 23 -3 [-59,-40] -49.5 79 1580 24 -2 [-39,-20] -29.5 79 1580 25 -1 [-19,0] -9.5 79 1580 26 0 [1,20] 10.5 79 1580 27 1 [21,40] 30.5 79 1580 28 2 [41,60] 50.5 79 1580 29 3 [61,80] 70.5 78 1475 30 4 [81,100] 90.5 70 1382 31 5 [101,120] 110.5 66 1285 32 6 [121,140] 130.5 62 1192 33 7 [141,160] 150.5 57 1104 34 8 [161,180] 170.5 53 1013 35 9 [181,200] 190.5 50 1000 36 10 [201,220] 210.5 50 961 37 11 [221,240] 230.5 47 940 38 12 [241,260] 250.5 47 902 39 13 [261,280] 270.5 45 900 40 14 [281,300] 290.5 45 873 41 15 [301,320] 310.5 42 827 42 16 [321,340] 330.5 41 820 43 17 [341,360] 350.5 41 796 44 18 [361,380] 370.5 39 780 45 19 [381,400] 390.5 39 780 46 20 [401,420] 410.5 39 780 47 21 [421,440] 430.5 39 780 48 22 [441,460] 450.5 39 780 49 23 [461,480] 470.5 39 760 50 24 [481,500] 490.5 35 665 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tc | tc | 469 | 216.1 | 49 | 7.5e-23 | 1.2e-21 | 20.92 | 1 | 3 | 1 | 5 | 4 | 2 | 5 | 1 | 6 | 6 | 5 | 4 | 7 | 4 | 5 | 5 | 4 | 8 | 8 | 8 | 8 | 23 | 27 | 37 | 24 | 32 | 38 | 24 | 30 | 17 | 12 | 13 | 12 | 7 | 6 | 11 | 4 | 1 | 6 | 2 | 2 | 6 | 4 | 6 | 1 | 5 | 4 | 4 | 6 | 3 | 3 |
| tt | tt | 1267 | 205.9 | 49 | 3.9e-21 | 6.3e-20 | 19.20 | 2 | 13 | 10 | 12 | 18 | 15 | 12 | 16 | 12 | 10 | 13 | 20 | 20 | 15 | 20 | 24 | 23 | 21 | 38 | 44 | 27 | 52 | 42 | 55 | 63 | 59 | 67 | 66 | 54 | 43 | 39 | 47 | 35 | 41 | 18 | 23 | 12 | 12 | 15 | 19 | 16 | 10 | 7 | 4 | 16 | 10 | 14 | 9 | 18 | 9 | 9 |
| ga | ga | 522 | 203.6 | 49 | 9.7e-21 | 1.6e-19 | 18.81 | 3 | 4 | 6 | 3 | 2 | 4 | 3 | 3 | 8 | 7 | 3 | 5 | 0 | 6 | 8 | 3 | 14 | 7 | 13 | 17 | 15 | 20 | 24 | 48 | 38 | 30 | 28 | 21 | 23 | 23 | 15 | 13 | 11 | 5 | 7 | 7 | 7 | 7 | 5 | 4 | 5 | 4 | 6 | 4 | 9 | 8 | 7 | 2 | 4 | 4 | 2 |
| aa | aa | 771 | 203.4 | 49 | 1.0e-20 | 1.7e-19 | 18.78 | 4 | 10 | 8 | 7 | 6 | 4 | 7 | 2 | 4 | 7 | 5 | 8 | 16 | 13 | 11 | 14 | 9 | 11 | 13 | 23 | 31 | 41 | 53 | 34 | 27 | 40 | 23 | 24 | 34 | 41 | 29 | 20 | 26 | 21 | 25 | 4 | 8 | 11 | 13 | 9 | 10 | 11 | 11 | 10 | 10 | 2 | 3 | 9 | 3 | 7 | 3 |
| at | at | 779 | 188.8 | 49 | 2.8e-18 | 4.4e-17 | 16.35 | 5 | 5 | 10 | 5 | 11 | 6 | 7 | 7 | 2 | 5 | 6 | 4 | 7 | 12 | 9 | 16 | 12 | 13 | 19 | 22 | 27 | 37 | 32 | 38 | 36 | 38 | 37 | 36 | 57 | 35 | 23 | 12 | 25 | 17 | 19 | 11 | 13 | 8 | 6 | 6 | 10 | 8 | 8 | 10 | 8 | 12 | 9 | 6 | 5 | 9 | 3 |
| ca | ca | 425 | 167.0 | 49 | 8.7e-15 | 1.4e-13 | 12.86 | 6 | 0 | 0 | 3 | 5 | 2 | 2 | 4 | 1 | 4 | 5 | 4 | 6 | 8 | 3 | 10 | 8 | 11 | 8 | 9 | 19 | 20 | 26 | 25 | 21 | 28 | 23 | 21 | 30 | 17 | 9 | 7 | 14 | 7 | 7 | 9 | 7 | 3 | 3 | 4 | 4 | 5 | 3 | 5 | 0 | 2 | 3 | 4 | 3 | 2 | 1 |
| tg | tg | 543 | 147.6 | 49 | 8.1e-12 | 1.3e-10 | 9.89 | 7 | 6 | 4 | 6 | 2 | 4 | 6 | 5 | 9 | 2 | 5 | 8 | 3 | 5 | 8 | 9 | 9 | 18 | 16 | 14 | 15 | 30 | 28 | 24 | 31 | 19 | 25 | 36 | 21 | 19 | 26 | 15 | 13 | 9 | 10 | 10 | 9 | 10 | 2 | 3 | 3 | 4 | 4 | 2 | 6 | 10 | 4 | 4 | 3 | 6 | 3 |
| ag | ag | 523 | 143.5 | 49 | 3.3e-11 | 5.2e-10 | 9.28 | 8 | 1 | 3 | 5 | 3 | 8 | 4 | 9 | 6 | 7 | 4 | 6 | 2 | 9 | 7 | 4 | 12 | 9 | 15 | 14 | 22 | 13 | 29 | 39 | 34 | 25 | 26 | 14 | 22 | 23 | 16 | 15 | 15 | 7 | 9 | 7 | 5 | 8 | 4 | 8 | 3 | 5 | 6 | 5 | 5 | 4 | 4 | 7 | 6 | 6 | 3 |
| gg | gg | 370 | 142.0 | 49 | 5.5e-11 | 8.8e-10 | 9.06 | 9 | 5 | 2 | 3 | 3 | 3 | 5 | 2 | 3 | 4 | 1 | 4 | 10 | 2 | 3 | 7 | 13 | 7 | 9 | 3 | 13 | 8 | 21 | 15 | 27 | 17 | 18 | 26 | 9 | 23 | 18 | 11 | 7 | 6 | 3 | 6 | 6 | 5 | 2 | 3 | 2 | 6 | 1 | 2 | 6 | 3 | 0 | 2 | 7 | 2 | 6 |
| ct | ct | 437 | 124.5 | 49 | 1.7e-08 | 2.7e-07 | 6.57 | 10 | 0 | 4 | 7 | 1 | 4 | 6 | 3 | 7 | 3 | 8 | 7 | 5 | 2 | 9 | 5 | 8 | 13 | 12 | 7 | 16 | 18 | 13 | 32 | 17 | 25 | 28 | 21 | 17 | 16 | 13 | 17 | 11 | 7 | 5 | 13 | 5 | 4 | 6 | 2 | 3 | 2 | 2 | 5 | 5 | 4 | 4 | 3 | 5 | 3 | 4 |
| gt | gt | 512 | 112.1 | 49 | 7.4e-07 | 1.2e-05 | 4.92 | 11 | 5 | 2 | 5 | 4 | 7 | 8 | 5 | 12 | 4 | 4 | 7 | 6 | 4 | 8 | 9 | 6 | 11 | 14 | 12 | 14 | 21 | 30 | 18 | 31 | 21 | 28 | 26 | 21 | 18 | 21 | 18 | 11 | 10 | 10 | 10 | 6 | 8 | 2 | 5 | 3 | 4 | 7 | 3 | 1 | 6 | 3 | 8 | 4 | 7 | 4 |
| ta | ta | 712 | 99.0 | 49 | 3.1e-05 | 0.0005 | 3.30 | 12 | 2 | 10 | 7 | 11 | 11 | 7 | 11 | 5 | 4 | 6 | 7 | 8 | 12 | 10 | 17 | 12 | 16 | 18 | 19 | 32 | 23 | 22 | 26 | 28 | 34 | 27 | 28 | 42 | 30 | 18 | 17 | 23 | 21 | 17 | 10 | 11 | 11 | 6 | 7 | 10 | 6 | 9 | 9 | 6 | 8 | 7 | 11 | 5 | 10 | 5 |
| cc | cc | 265 | 95.0 | 49 | 8.9e-05 | 0.0014 | 2.85 | 13 | 2 | 1 | 2 | 2 | 1 | 0 | 2 | 4 | 6 | 3 | 0 | 1 | 1 | 4 | 0 | 6 | 7 | 2 | 10 | 7 | 12 | 17 | 16 | 12 | 21 | 21 | 19 | 8 | 5 | 9 | 9 | 10 | 6 | 3 | 3 | 3 | 3 | 4 | 3 | 0 | 3 | 2 | 4 | 2 | 1 | 2 | 2 | 2 | 1 | 1 |
| ac | ac | 364 | 91.9 | 49 | 2.0e-04 | 0.0032 | 2.50 | 14 | 0 | 4 | 2 | 3 | 4 | 2 | 2 | 5 | 4 | 5 | 6 | 4 | 3 | 6 | 11 | 11 | 10 | 6 | 13 | 17 | 11 | 16 | 20 | 19 | 25 | 20 | 16 | 15 | 11 | 8 | 11 | 6 | 8 | 5 | 6 | 8 | 5 | 3 | 3 | 5 | 2 | 4 | 4 | 1 | 3 | 4 | 2 | 2 | 2 | 1 |
| cg | cg | 275 | 91.1 | 49 | 2.5e-04 | 0.0039 | 2.41 | 15 | 3 | 6 | 3 | 3 | 2 | 3 | 2 | 4 | 4 | 3 | 1 | 3 | 2 | 4 | 3 | 6 | 1 | 2 | 9 | 10 | 7 | 12 | 17 | 22 | 15 | 17 | 19 | 18 | 8 | 8 | 6 | 1 | 3 | 2 | 4 | 5 | 1 | 2 | 1 | 2 | 2 | 4 | 4 | 1 | 1 | 7 | 3 | 4 | 1 | 4 |
| gc | gc | 302 | 77.2 | 49 | 6.2e-03 | 0.1 | 1.00 | 16 | 1 | 5 | 5 | 2 | 3 | 3 | 6 | 1 | 3 | 4 | 3 | 2 | 4 | 5 | 3 | 7 | 7 | 9 | 5 | 19 | 9 | 11 | 14 | 18 | 11 | 9 | 23 | 19 | 9 | 10 | 7 | 7 | 5 | 2 | 6 | 6 | 3 | 2 | 1 | 2 | 2 | 2 | 3 | 3 | 1 | 5 | 4 | 3 | 3 | 5 |
Host name rsat Job started 2026-04-21.014837 Job done 2026-04-21.014838 Seconds 0.37 user 0.37 system 0.01 cuser 0 ; csystem 0