compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf Output files match_table_txt $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans alignments_1ton $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans.html html_index $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_cisBP_Caenorhabditis_elegans_index.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file1 1 10 76 file2 3438 matrices $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf file2 1 7 100.0001 file2 2 8 100.00002892 file2 3 11 100.00004702 file2 4 9 100 file2 5 10 100.0001 file2 6 10 100.0001 file2 7 13 100.0001 file2 8 10 100.0001 file2 9 10 100.0001 file2 10 10 100.0001 file2 11 10 100.0001 ... 3428 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv2_m1 | M00651_2.00 | oligos_6nt_mkv2_m1 | mex-6 | 0.742 | 0.742 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | R | 0 |
| oligos_6nt_mkv2_m1 | M02210_2.00 | oligos_6nt_mkv2_m1 | ceh-9,mls-2 | 0.706 | 0.706 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | M00669_2.00 | oligos_6nt_mkv2_m1 | med-1,med-2 | 0.715 | 0.585 | 10 | 10 | 9 | 11 | 0.8182 | 0.9000 | 0.9000 | D | -1 |
| oligos_6nt_mkv2_m1 | M00367_2.00 | oligos_6nt_mkv2_m1 | nhr-23,nhr-41,nhr-91 | 0.711 | 0.547 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | R | -2 |
| oligos_6nt_mkv2_m1 | M00169_2.00 | oligos_6nt_mkv2_m1 | ceh-32 | 0.724 | 0.506 | 10 | 7 | 7 | 10 | 0.7000 | 0.7000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | M00056_2.00 | oligos_6nt_mkv2_m1 | alr-1,ceh-10,ceh-16,ceh-17,ceh-8,unc-4,unc-42,vab-15 | 0.726 | 0.462 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| oligos_6nt_mkv2_m1 | M06497_2.00 | oligos_6nt_mkv2_m1 | ceh-33,unc-39 | 0.741 | 0.445 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | M00483_2.00 | oligos_6nt_mkv2_m1 | ceh-32 | 0.814 | 0.444 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | -1 |
| oligos_6nt_mkv2_m1 | M02745_2.00 | oligos_6nt_mkv2_m1 | mef-2 | 0.920 | 0.430 | 10 | 12 | 7 | 15 | 0.4667 | 0.7000 | 0.5833 | D | 3 |
| oligos_6nt_mkv2_m1 | M00326_2.00 | oligos_6nt_mkv2_m1 | ceh-32 | 0.786 | 0.429 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | -1 |
| oligos_6nt_mkv2_m1 | M06329_2.00 | oligos_6nt_mkv2_m1 | alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mls-2,tab-1,unc-4,unc-42,vab-15 | 0.709 | 0.413 | 10 | 9 | 7 | 12 | 0.5833 | 0.7000 | 0.7778 | D | 3 |
Host name rsat Job started 2026-04-21.014853 Job done 2026-04-21.014856 Seconds 1.41 user 1.41 system 0.23 cuser 1.54 ; csystem 0.29