One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.014834_2026-04-21.014834_X2uSrl/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1) |
 |
|
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; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; hwATACTAaw
; Alignment reference
a 24 37 76 0 76 0 0 76 44 38
c 21 11 0 0 0 76 0 0 6 1
g 3 4 0 0 0 0 0 0 12 9
t 28 24 0 76 0 0 76 0 14 28
|
| oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1) |
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|
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; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/2; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; hwATACTAaw
; cor=; Ncor=
a 24 37 76 0 76 0 0 76 44 38
c 21 11 0 0 0 76 0 0 6 1
g 3 4 0 0 0 0 0 0 12 9
t 28 24 0 76 0 0 76 0 14 28
|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
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; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.878154; wAATACTAAw
; cor=; Ncor=
a 48 118 138 2 162 0 16 169 141 73
c 37 17 0 0 0 173 2 2 6 6
g 3 6 5 27 0 0 0 2 12 9
t 85 32 30 144 11 0 155 0 14 85
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
|
|
|
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; wAATACTAAwa
; Alignment reference
a 48 118 138 2 162 0 16 169 141 73 86
c 37 17 0 0 0 173 2 2 6 6 35
g 3 6 5 27 0 0 0 2 12 9 25
t 85 32 30 144 11 0 155 0 14 85 27
|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
|
|
|
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wAATACTAAwa
; cor=; Ncor=
a 48 118 138 2 162 0 16 169 141 73 86
c 37 17 0 0 0 173 2 2 6 6 35
g 3 6 5 27 0 0 0 2 12 9 25
t 85 32 30 144 11 0 155 0 14 85 27
|
| oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1) |
|
|
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; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=2/2; ncol2=10; w=0; offset=0; strand=D; shift=0; score=0.878154; hwATACTAaw-
; cor=; Ncor=
a 24 37 76 0 76 0 0 76 44 38 0
c 21 11 0 0 0 76 0 0 6 1 0
g 3 4 0 0 0 0 0 0 12 9 0
t 28 24 0 76 0 0 76 0 14 28 0
|