/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf
		file1	1	11	82
	file2	3438 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
		file2		1		7		100.0001
		file2		2		8		100.00002892
		file2		3		11		100.00004702
		file2		4		9		100
		file2		5		10		100.0001
		file2		6		10		100.0001
		file2		7		13		100.0001
		file2		8		10		100.0001
		file2		9		10		100.0001
		file2		10		10		100.0001
		file2		11		10		100.0001
		...	3428 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m1 M07439_2.00 positions_6nt_m1 M07439_2.00 0.806 0.660 11 9 9 11 0.8182 0.8182 1.0000 D 1
positions_6nt_m1 M08479_2.00 positions_6nt_m1 M08479_2.00 0.805 0.659 11 9 9 11 0.8182 0.8182 1.0000 D 1
positions_6nt_m1 M02532_2.00 positions_6nt_m1 lin-54 0.757 0.641 11 13 11 13 0.8462 1.0000 0.8462 D -2
positions_6nt_m1 M00654_2.00 positions_6nt_m1 mab-23 0.861 0.626 11 8 8 11 0.7273 0.7273 1.0000 R 0
positions_6nt_m1 M07301_2.00 positions_6nt_m1 lin-54 0.726 0.570 11 14 11 14 0.7857 1.0000 0.7857 D -1
positions_6nt_m1 M01108_2.00 positions_6nt_m1 M01108_2.00 0.774 0.563 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M01691_2.00 positions_6nt_m1 athp-3 0.857 0.545 11 7 7 11 0.6364 0.6364 1.0000 D 0
positions_6nt_m1 M07300_2.00 positions_6nt_m1 lin-54 0.736 0.539 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m1 M01688_2.00 positions_6nt_m1 M01688_2.00 0.736 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M01106_2.00 positions_6nt_m1 M01106_2.00 0.735 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M07295_2.00 positions_6nt_m1 lin-54 0.727 0.533 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m1 M07298_2.00 positions_6nt_m1 lin-54 0.725 0.532 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m1 M01517_2.00 positions_6nt_m1 M01517_2.00 0.722 0.525 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M07296_2.00 positions_6nt_m1 lin-54 0.716 0.525 11 15 11 15 0.7333 1.0000 0.7333 D -1
positions_6nt_m1 M07299_2.00 positions_6nt_m1 lin-54 0.702 0.515 11 15 11 15 0.7333 1.0000 0.7333 D -3
positions_6nt_m1 M00008_2.00 positions_6nt_m1 M00008_2.00 0.804 0.512 11 7 7 11 0.6364 0.6364 1.0000 D 1
positions_6nt_m1 M01671_2.00 positions_6nt_m1 M01671_2.00 0.766 0.510 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m1 M01105_2.00 positions_6nt_m1 M01105_2.00 0.701 0.467 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m1 M01104_2.00 positions_6nt_m1 M01104_2.00 0.744 0.458 11 10 8 13 0.6154 0.7273 0.8000 D -2
positions_6nt_m1 M01685_2.00 positions_6nt_m1 M01685_2.00 0.783 0.457 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M01692_2.00 positions_6nt_m1 M01692_2.00 0.773 0.451 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M06277_2.00 positions_6nt_m1 alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15 0.729 0.449 11 10 8 13 0.6154 0.7273 0.8000 R -2
positions_6nt_m1 M00206_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.766 0.447 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00204_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.763 0.445 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00209_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.761 0.444 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M01677_2.00 positions_6nt_m1 M01677_2.00 0.755 0.440 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00197_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.745 0.435 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00203_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.743 0.434 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m1 M01679_2.00 positions_6nt_m1 M01679_2.00 0.741 0.432 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00613_2.00 positions_6nt_m1 lin-29 0.732 0.427 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m1 M01107_2.00 positions_6nt_m1 M01107_2.00 0.726 0.424 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00208_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.753 0.406 11 9 7 13 0.5385 0.6364 0.7778 R -2 
 Host name	rsat
 Job started	2026-04-21.015310
 Job done	2026-04-21.015317
 Seconds	1.54
	user	1.54
	system	0.41
	cuser	3.89
;	csystem	0.93