One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift3 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=11; shift=3; ncol=14; ---vwAAAATTCwr ; Alignment reference a 0 0 0 22 27 81 75 78 79 0 11 4 23 24 c 0 0 0 24 14 1 0 1 2 0 0 78 2 12 g 0 0 0 22 6 0 0 0 1 1 0 0 17 37 t 0 0 0 14 35 0 7 3 0 81 71 0 40 9

M07439_2.00_shift4 (M07439_2.00)
; positions_6nt_m1 versus M07439_2.00; m=1/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.65964; ----awAAATwwt- ; cor=; Ncor= a 0 0 0 0 59 61.6162 76 92 100 0 34 32 22 0 c 0 0 0 0 11 5.05051 0 0 0 0 2 8 14 0 g 0 0 0 0 15 5.05051 0 0 0 0 2 8 14 0 t 0 0 0 0 15 28.2828 24 8 0 100 62 52 50 0

M08479_2.00_shift4 (M08479_2.00)
; positions_6nt_m1 versus M08479_2.00; m=2/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.658737; ----awAAATwwt- ; cor=; Ncor= a 0 0 0 0 59 61 76 92 100 0 34 32 22 0 c 0 0 0 0 11 5 0 0 0 0 2 8 14 0 g 0 0 0 0 15 5 0 0 0 0 2 8 14 0 t 0 0 0 0 15 29 24 8 0 100 62 52 50 0

M02532_2.00_shift1 (lin-54)
; positions_6nt_m1 versus M02532_2.00 (lin-54); m=3/32; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.640854; -twttwAAATTttk ; cor=; Ncor= a 0 21.7767 26.1094 14.2765 9.59039 47.8285 91.7648 99.9727 99.9727 11.4403 7.41257 10.7326 24.396 20.5114 c 0 21.7767 17.5965 14.2765 18.1194 13.1754 8.21699 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.396 20.5114 g 0 21.7767 17.5965 14.2765 9.59039 12.7056 0.00909916 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.0964 29.4886 t 0 34.6698 38.6975 57.1704 62.6998 26.2905 0 0 0 82.095 77.7623 67.8023 27.1117 29.4886

M00654_2.00_rc_shift3 (mab-23_rc)
; positions_6nt_m1 versus M00654_2.00_rc (mab-23_rc); m=4/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.62615; ---ryraawwt--- ; cor=; Ncor= a 0 0 0 27.2171 24.6535 60.2373 53.36 54.9449 45.2693 27.4258 19.9192 0 0 0 c 0 0 0 23.8992 32.2952 5.09517 20.0266 10.1384 8.78133 11.7222 18.5725 0 0 0 g 0 0 0 26.1499 11.0775 27.0664 15.2879 11.8975 11.7356 21.1467 21.7951 0 0 0 t 0 0 0 22.7337 31.9738 7.6011 11.3255 23.0192 34.2138 39.7053 39.7132 0 0 0

M07301_2.00_shift2 (lin-54)
; positions_6nt_m1 versus M07301_2.00 (lin-54); m=5/32; ncol2=14; w=-1; offset=-1; strand=D; shift=2; score=0.570047; --TTyaAAATTyRA ; cor=; Ncor= a 0 0 19.6667 11.1667 12.1667 49.5 89 93.6667 79.3333 1.1667 0 0 68.8333 100 c 0 0 6.8333 7.1667 27.5 20.1667 1.5 2.1667 0 0 0 47.8333 0 0 g 0 0 3.5 0.5 7.1667 19.3333 6.8333 1.3333 4.6667 0.6667 0 0 31.1667 0 t 0 0 70 81.1667 53.1667 11 2.6667 2.8333 16 98.1667 100 52.1667 0 0

M01108_2.00_shift3 (M01108_2.00)
; positions_6nt_m1 versus M01108_2.00; m=6/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.562877; ---waawwAww--- ; cor=; Ncor= a 0 0 0 42.3349 53.6851 59.1376 50.1697 57.7953 85.2706 52.0642 27.9377 0 0 0 c 0 0 0 12.4985 10.731 5.31146 3.50928 2.99489 2.84576 1.48065 6.82081 0 0 0 g 0 0 0 19.9976 18.4144 11.0217 4.83273 1.98756 1.85119 3.82852 6.68575 0 0 0 t 0 0 0 25.169 17.1695 24.5293 41.4883 37.2223 10.0325 42.6266 58.5557 0 0 0

M01691_2.00_shift3 (athp-3)
; positions_6nt_m1 versus M01691_2.00 (athp-3); m=7/32; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.545435; ---mrwwwat---- ; cor=; Ncor= a 0 0 0 27.2989 31.1542 40.9498 46.4798 58.2238 57.604 23.5345 0 0 0 0 c 0 0 0 27.5733 19.0859 10.6158 9.57368 12.8622 0.0723378 21.2949 0 0 0 0 g 0 0 0 24.7011 25.2531 18.3999 15.4718 1.41099 22.9563 4.84751 0 0 0 0 t 0 0 0 20.4268 24.5068 30.0345 28.4747 27.503 19.3674 50.3232 0 0 0 0

M07300_2.00_shift1 (lin-54)
; positions_6nt_m1 versus M07300_2.00 (lin-54); m=8/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.539499; -wTTyaAAATTyRA ; cor=; Ncor= a 0 42.9048 22.5376 10.0167 9.015 48.7479 93.3222 92.4875 85.8097 1.6694 0 0 72.621 100 c 0 8.1803 3.8397 6.8447 28.8815 22.0367 1.0017 2.3372 0 0.1669 0 53.0885 0.1669 0 g 0 10.1836 4.6745 0.1669 6.8447 17.8631 4.3406 0.1669 2.3372 1.1686 0 0 27.212 0 t 0 38.7312 68.9482 82.9716 55.2588 11.3523 1.3356 5.0083 11.8531 96.995 100 46.9115 0 0

M01688_2.00_shift3 (M01688_2.00)
; positions_6nt_m1 versus M01688_2.00; m=9/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.535435; ---awwwAwww--- ; cor=; Ncor= a 0 0 0 41.2581 38.386 41.1062 44.2483 80.5888 50.8656 34.0689 31.0543 0 0 0 c 0 0 0 18.1714 15.1453 4.28945 11.5862 0.182567 0.117559 7.60179 19.409 0 0 0 g 0 0 0 20.4881 18.3145 19.224 5.3112 7.76293 6.95309 6.47782 14.5231 0 0 0 t 0 0 0 20.0825 28.1541 35.3804 38.8542 11.4657 42.0638 51.8515 35.0136 0 0 0

M01106_2.00_shift3 (M01106_2.00)
; positions_6nt_m1 versus M01106_2.00; m=10/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.534555; ---aawwwAww--- ; cor=; Ncor= a 0 0 0 48.3861 55.0968 56.1595 51.3647 59.7236 76.3937 58.2011 38.0653 0 0 0 c 0 0 0 9.20009 14.0005 5.86027 4.01064 3.7424 3.69101 0.774067 2.03258 0 0 0 g 0 0 0 21.525 16.7616 11.4524 6.95145 3.09481 3.37333 2.78404 0.203784 0 0 0 t 0 0 0 20.8888 14.1412 26.5279 37.6733 33.4392 16.542 38.2408 59.6983 0 0 0

M07295_2.00_shift1 (lin-54)
; positions_6nt_m1 versus M07295_2.00 (lin-54); m=11/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.533488; -WTwaAAwATTyAA ; cor=; Ncor= a 0 26.2982 24.1206 39.6985 60.9715 77.5544 93.6348 56.2814 82.0771 0 0 0 86.2647 85.7621 c 0 2.0101 3.3501 18.7605 8.2077 10.8878 0 2.1776 0 0 0 32.4958 0 14.2379 g 0 3.1826 1.34 2.6801 7.5377 3.0151 5.0251 16.0804 2.6801 0 0 0 13.7353 0 t 0 68.5092 71.1893 38.861 23.2831 8.5427 1.34 25.4606 15.2429 100 100 67.5042 0 0

M07298_2.00_shift1 (lin-54)
; positions_6nt_m1 versus M07298_2.00 (lin-54); m=12/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.531841; -wTwwAAAATTYAA ; cor=; Ncor= a 0 32 15.8333 27.8333 36.5 73.5 90.5 77.6667 80.6667 0 0 0 80.3333 92.5 c 0 2.8333 2.6667 6.1667 11.5 9 0 0.5 0 0 0 28.1667 0 7.5 g 0 4.5 1 1.1667 7.6667 11.6667 7.1667 11 3.8333 0 0 0 19.6667 0 t 0 60.6667 80.5 64.8333 44.3333 5.8333 2.3333 10.8333 15.5 100 100 71.8333 0 0

M01517_2.00_shift3 (M01517_2.00)
; positions_6nt_m1 versus M01517_2.00; m=13/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.52532; ---wawwwAww--- ; cor=; Ncor= a 0 0 0 34.0141 40.2816 39.9077 33.2385 55.6169 80.1022 51.6361 29.702 0 0 0 c 0 0 0 17.7569 18.8384 14.6812 10.5245 0.0482426 0.0213501 0.0220205 7.4724 0 0 0 g 0 0 0 21.4725 22.7803 20.2179 16.8392 10.2624 1.08687 0.196758 6.49619 0 0 0 t 0 0 0 26.7564 18.0997 25.1931 39.3978 34.0724 18.7896 48.1452 56.3294 0 0 0

M07296_2.00_shift2 (lin-54)
; positions_6nt_m1 versus M07296_2.00 (lin-54); m=14/32; ncol2=15; w=-1; offset=-1; strand=D; shift=2; score=0.524798; --wttmAAATTyAA ; cor=; Ncor= a 0 0 37.5 24 22.8333 36.3333 83.1667 80.6667 77.6667 0 0.1667 0 79.8333 100 c 0 0 5.3333 13.5 18.3333 26 2.6667 1 0 0.1667 0 53 0 0 g 0 0 6.3333 0 7.6667 13.6667 13.1667 3 4 0.1667 0 0 20.1667 0 t 0 0 50.8333 62.5 51.1667 24 1 15.3333 18.3333 99.6667 99.8333 47 0 0

M07299_2.00_shift0 (lin-54)
; positions_6nt_m1 versus M07299_2.00 (lin-54); m=15/32; ncol2=15; w=-3; offset=-3; strand=D; shift=0; score=0.515028; wwwTwaAAATTYAA ; cor=; Ncor= a 51.5152 36.7424 26.8939 20.4545 32.5758 60.6061 86.3636 87.8788 92.4242 0 0 0 81.0606 100 c 5.6818 3.4091 4.1667 2.2727 14.3939 9.8485 0 0.3788 0 3.0303 0 26.1364 0 0 g 10.6061 10.6061 3.0303 3.4091 5.6818 15.5303 13.2576 6.0606 0 1.1364 0 0 17.0455 0 t 32.197 49.2424 65.9091 73.8636 47.3485 14.0152 0.3788 5.6818 7.5758 95.8333 100 73.8636 1.8939 0

M00008_2.00_shift4 (M00008_2.00)
; positions_6nt_m1 versus M00008_2.00; m=16/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.511636; ----awwaaww--- ; cor=; Ncor= a 0 0 0 0 28.2959 31.6659 37.7778 61.6393 67.5764 32.6032 32.1153 0 0 0 c 0 0 0 0 24.8465 18.4532 11.2652 6.89847 4.27703 13.3887 13.7266 0 0 0 g 0 0 0 0 24.5993 23.6944 20.9413 11.1484 6.31709 8.20227 11.2384 0 0 0 t 0 0 0 0 22.2583 26.1864 30.0157 20.3138 21.8294 45.8058 42.9198 0 0 0

M01671_2.00_shift2 (M01671_2.00)
; positions_6nt_m1 versus M01671_2.00; m=17/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.510372; --ssrrwAAwt--- ; cor=; Ncor= a 0 0 24.1564 20.939 34.5181 32.972 41.1309 71.0467 88.6835 45.4667 21.2559 0 0 0 c 0 0 26.697 30.6188 18.2011 17.9153 4.29202 4.77473 0.0920958 0.977243 17.7544 0 0 0 g 0 0 26.1683 25.0685 30.3102 25.1701 20.2217 0.0514748 4.50449 3.80753 9.74383 0 0 0 t 0 0 22.9783 23.3737 16.9706 23.9426 34.3554 24.1271 6.7199 49.7485 51.2458 0 0 0

M01105_2.00_shift2 (M01105_2.00)
; positions_6nt_m1 versus M01105_2.00; m=18/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.467369; --waarwwwww--- ; cor=; Ncor= a 0 0 37.434 33.1918 36.7239 39.8201 30.6146 57.2249 60.2371 50.597 33.1768 0 0 0 c 0 0 17.3324 23.625 21.1878 10.6374 17.3133 0.213737 9.28396 4.82539 9.60085 0 0 0 g 0 0 18.5892 21.5916 19.3642 25.3904 15.0515 14.9841 4.47402 5.95298 10.6106 0 0 0 t 0 0 26.6444 21.5916 22.7241 24.1521 37.0206 27.5772 26.005 38.6247 46.6117 0 0 0

M01104_2.00_shift1 (M01104_2.00)
; positions_6nt_m1 versus M01104_2.00; m=19/32; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.457878; -waaawwAwwh--- ; cor=; Ncor= a 0 27.5242 35.4896 39.3688 44.6255 36.9831 50.4457 79.6844 60.5595 29.6896 30.638 0 0 0 c 0 20.8023 19.4771 19.9449 10.1584 8.58882 4.48571 0.0336438 0.00624251 0.0115716 26.108 0 0 0 g 0 17.0315 22.6292 17.5135 22.608 12.3106 7.69751 0.0336438 0.0397012 2.88867 10.7214 0 0 0 t 0 34.642 22.404 23.1727 22.608 42.1174 37.3711 20.2484 39.3945 67.4102 32.5326 0 0 0

M01685_2.00_shift2 (M01685_2.00)
; positions_6nt_m1 versus M01685_2.00; m=20/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.456837; --mrrdwWww---- ; cor=; Ncor= a 0 0 29.5752 25.6034 36.9207 33.4398 40.8108 71.6329 60.4747 27.0214 0 0 0 0 c 0 0 28.9896 24.8467 13.996 13.3264 8.15758 0.214715 0.0299635 13.5533 0 0 0 0 g 0 0 22.5771 26.3831 27.3515 25.0218 17.6185 0.170598 13.9047 7.66473 0 0 0 0 t 0 0 18.858 23.1669 21.7317 28.212 33.4131 27.9818 25.5906 51.7606 0 0 0 0

M01692_2.00_shift2 (M01692_2.00)
; positions_6nt_m1 versus M01692_2.00; m=21/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.451119; --mdrawaRt---- ; cor=; Ncor= a 0 0 31.8198 25.6386 32.2138 33.0083 35.3662 54.031 70.8523 21.6909 0 0 0 0 c 0 0 26.3137 20.168 19.5387 19.0441 15.5764 7.23955 0.00976059 22.8031 0 0 0 0 g 0 0 21.979 26.4194 25.0882 23.4943 21.2373 15.6357 29.0959 10.0432 0 0 0 0 t 0 0 19.8875 27.774 23.1593 24.4532 27.8201 23.0937 0.0420287 45.4628 0 0 0 0

M06277_2.00_rc_shift1 (alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15_rc)
; positions_6nt_m1 versus M06277_2.00_rc (alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15_rc); m=22/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.448648; -CAtTwAwaTT--- ; cor=; Ncor= a 0 8.33333 100 25 0 58.3333 83.3333 66.6667 41.6667 16.6667 0 0 0 0 c 0 83.3333 0 8.33333 0 0 0 0 25 8.33333 8.33333 0 0 0 g 0 8.33333 0 0 0 0 0 0 16.6667 0 16.6667 0 0 0 t 0 0 0 66.6667 100 41.6667 16.6667 33.3333 16.6667 75 75 0 0 0

M00206_2.00_shift2 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00206_2.00 (sox-2,sox-3,sox-4); m=23/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.446811; --araAcAAT---- ; cor=; Ncor= a 0 0 32.9744 31.5975 38.7559 69.6768 4.65359 99.7612 90.2273 22.1148 0 0 0 0 c 0 0 19.604 16.1687 18.491 5.8936 50.7869 0.129093 5.43213 3.54751 0 0 0 0 g 0 0 24.185 28.5906 21.4834 5.44048 19.8388 0.0814944 4.31601 3.08406 0 0 0 0 t 0 0 23.2367 23.6432 21.2697 18.9891 24.7207 0.0282342 0.0245347 71.2537 0 0 0 0

M00204_2.00_shift2 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00204_2.00 (sox-2,sox-3,sox-4); m=24/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.445352; --arawcAAT---- ; cor=; Ncor= a 0 0 30.4046 31.6486 34.7135 59.5861 7.84313 88.3669 90.2298 18.2652 0 0 0 0 c 0 0 20.7925 18.2597 19.436 7.2967 50.3822 2.53831 3.19747 6.32809 0 0 0 0 g 0 0 24.1575 26.1721 22.5814 6.34345 22.8657 0.0562189 5.48688 4.24185 0 0 0 0 t 0 0 24.6455 23.9195 23.2691 26.7738 18.909 9.03854 1.08585 71.1648 0 0 0 0

M00209_2.00_shift2 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00209_2.00 (sox-2,sox-3,sox-4); m=25/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.443724; --araAcAAT---- ; cor=; Ncor= a 0 0 29.8569 31.925 35.7639 67.9599 5.68531 93.1608 86.9014 18.3811 0 0 0 0 c 0 0 21.2512 17.5208 19.239 5.52298 55.5835 1.19045 2.62419 5.99739 0 0 0 0 g 0 0 24.6904 26.666 23.7347 5.63455 18.6881 0.0957828 8.1236 4.71771 0 0 0 0 t 0 0 24.2015 23.8883 21.2624 20.8826 20.0431 5.55294 2.35084 70.9038 0 0 0 0

M01677_2.00_shift2 (M01677_2.00)
; positions_6nt_m1 versus M01677_2.00; m=26/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.440485; --mkrawaRh---- ; cor=; Ncor= a 0 0 37.7279 24.75 34.3177 34.0293 34.6936 57.6007 73.2846 25.3553 0 0 0 0 c 0 0 27.1235 20.2636 17.7371 17.7648 15.4337 3.33187 0.000129006 25.8675 0 0 0 0 g 0 0 19.4997 27.0808 25.1702 24.4645 21.4679 17.8773 26.6916 6.12874 0 0 0 0 t 0 0 15.6489 27.9056 22.7749 23.7414 28.4048 21.1901 0.0236203 42.6484 0 0 0 0

M00197_2.00_shift2 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00197_2.00 (sox-2,sox-3,sox-4); m=27/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.434572; --rrawcAAT---- ; cor=; Ncor= a 0 0 31.2219 31.5226 42.5231 60.2919 5.82109 97.1833 89.0196 18.0233 0 0 0 0 c 0 0 20.108 16.1304 16.6107 4.30251 50.4755 1.64312 3.12319 5.21565 0 0 0 0 g 0 0 25.3079 28.5228 21.7594 2.97189 24.569 0.0386425 7.837 4.40026 0 0 0 0 t 0 0 23.3622 23.8242 19.1068 32.4337 19.1344 1.13496 0.0202188 72.3608 0 0 0 0

M00203_2.00_rc_shift2 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00203_2.00_rc (sox-2,sox-3,sox-4_rc); m=28/32; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.433523; --rrrAcAAT---- ; cor=; Ncor= a 0 0 32.506 26.7073 47.1419 84.5992 4.87858 95.8464 84.7024 15.0993 0 0 0 0 c 0 0 17.6621 16.6921 13.9177 3.41414 67.6843 0.0489354 3.66616 7.49807 0 0 0 0 g 0 0 28.2593 34.2928 27.1985 3.58919 11.0768 0.534057 10.2692 6.26292 0 0 0 0 t 0 0 21.5726 22.3078 11.7419 8.39743 16.3603 3.57065 1.36226 71.1397 0 0 0 0

M01679_2.00_shift2 (M01679_2.00)
; positions_6nt_m1 versus M01679_2.00; m=29/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.432264; --WWAwAwAT---- ; cor=; Ncor= a 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 0 0 0 c 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 0 g 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 0 t 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0 0 0 0

M00613_2.00_rc_shift2 (lin-29_rc)
; positions_6nt_m1 versus M00613_2.00_rc (lin-29_rc); m=30/32; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.426737; --gAAAAAAa---- ; cor=; Ncor= a 0 0 24.2861 77.7565 83.8146 98.96 98.96 91.8922 71.8555 56.9619 0 0 0 0 c 0 0 15.7196 9.09733 6.06826 0.0100969 0.0100969 3.03918 15.6289 12.7964 0 0 0 0 g 0 0 42.8469 3.03918 2.02948 0.0100969 0.0100969 1.01979 8.34027 10.4719 0 0 0 0 t 0 0 17.1473 10.107 8.08764 1.01979 1.01979 4.04887 4.17534 19.7699 0 0 0 0

M01107_2.00_shift2 (M01107_2.00)
; positions_6nt_m1 versus M01107_2.00; m=31/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.423786; --aAawwAww---- ; cor=; Ncor= a 0 0 62.5139 68.9816 66.0471 52.4467 52.5023 76.1535 59.0061 34.2342 0 0 0 0 c 0 0 1.48496 7.95531 3.00527 2.77263 3.1609 4.77193 5.04118 2.78215 0 0 0 0 g 0 0 17.9105 10.9555 6.89205 3.5247 3.03696 4.44932 4.21075 4.82217 0 0 0 0 t 0 0 18.0905 12.1077 24.0556 41.256 41.2998 14.6253 31.742 58.1615 0 0 0 0

M00208_2.00_rc_shift1 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00208_2.00_rc (sox-2,sox-3,sox-4_rc); m=32/32; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score=0.405714; -varaacAAt---- ; cor=; Ncor= a 0 25.2444 29.7331 31.449 34.8399 60.3397 7.68003 87.0814 82.9432 22.913 0 0 0 0 c 0 25.2444 21.8077 18.1445 20.507 7.76783 47.8765 2.08933 5.51877 8.01813 0 0 0 0 g 0 25.4981 24.8352 27.3404 22.4382 7.8459 20.6688 3.0859 8.74215 8.01813 0 0 0 0 t 0 24.0132 23.624 23.0661 22.2149 24.0465 23.7747 7.74342 2.7959 61.0507 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m1_shift3 (positions_6nt_m1)				; positions_6nt_m1; m=0 (reference); ncol1=11; shift=3; ncol=14; ---vwAAAATTCwr ; Alignment reference a 0 0 0 22 27 81 75 78 79 0 11 4 23 24 c 0 0 0 24 14 1 0 1 2 0 0 78 2 12 g 0 0 0 22 6 0 0 0 1 1 0 0 17 37 t 0 0 0 14 35 0 7 3 0 81 71 0 40 9
M07439_2.00_shift4 (M07439_2.00)				; positions_6nt_m1 versus M07439_2.00; m=1/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.65964; ----awAAATwwt- ; cor=; Ncor= a 0 0 0 0 59 61.6162 76 92 100 0 34 32 22 0 c 0 0 0 0 11 5.05051 0 0 0 0 2 8 14 0 g 0 0 0 0 15 5.05051 0 0 0 0 2 8 14 0 t 0 0 0 0 15 28.2828 24 8 0 100 62 52 50 0
M08479_2.00_shift4 (M08479_2.00)				; positions_6nt_m1 versus M08479_2.00; m=2/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.658737; ----awAAATwwt- ; cor=; Ncor= a 0 0 0 0 59 61 76 92 100 0 34 32 22 0 c 0 0 0 0 11 5 0 0 0 0 2 8 14 0 g 0 0 0 0 15 5 0 0 0 0 2 8 14 0 t 0 0 0 0 15 29 24 8 0 100 62 52 50 0
M02532_2.00_shift1 (lin-54)				; positions_6nt_m1 versus M02532_2.00 (lin-54); m=3/32; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.640854; -twttwAAATTttk ; cor=; Ncor= a 0 21.7767 26.1094 14.2765 9.59039 47.8285 91.7648 99.9727 99.9727 11.4403 7.41257 10.7326 24.396 20.5114 c 0 21.7767 17.5965 14.2765 18.1194 13.1754 8.21699 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.396 20.5114 g 0 21.7767 17.5965 14.2765 9.59039 12.7056 0.00909916 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.0964 29.4886 t 0 34.6698 38.6975 57.1704 62.6998 26.2905 0 0 0 82.095 77.7623 67.8023 27.1117 29.4886
M00654_2.00_rc_shift3 (mab-23_rc)				; positions_6nt_m1 versus M00654_2.00_rc (mab-23_rc); m=4/32; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.62615; ---ryraawwt--- ; cor=; Ncor= a 0 0 0 27.2171 24.6535 60.2373 53.36 54.9449 45.2693 27.4258 19.9192 0 0 0 c 0 0 0 23.8992 32.2952 5.09517 20.0266 10.1384 8.78133 11.7222 18.5725 0 0 0 g 0 0 0 26.1499 11.0775 27.0664 15.2879 11.8975 11.7356 21.1467 21.7951 0 0 0 t 0 0 0 22.7337 31.9738 7.6011 11.3255 23.0192 34.2138 39.7053 39.7132 0 0 0
M07301_2.00_shift2 (lin-54)				; positions_6nt_m1 versus M07301_2.00 (lin-54); m=5/32; ncol2=14; w=-1; offset=-1; strand=D; shift=2; score=0.570047; --TTyaAAATTyRA ; cor=; Ncor= a 0 0 19.6667 11.1667 12.1667 49.5 89 93.6667 79.3333 1.1667 0 0 68.8333 100 c 0 0 6.8333 7.1667 27.5 20.1667 1.5 2.1667 0 0 0 47.8333 0 0 g 0 0 3.5 0.5 7.1667 19.3333 6.8333 1.3333 4.6667 0.6667 0 0 31.1667 0 t 0 0 70 81.1667 53.1667 11 2.6667 2.8333 16 98.1667 100 52.1667 0 0
M01108_2.00_shift3 (M01108_2.00)				; positions_6nt_m1 versus M01108_2.00; m=6/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.562877; ---waawwAww--- ; cor=; Ncor= a 0 0 0 42.3349 53.6851 59.1376 50.1697 57.7953 85.2706 52.0642 27.9377 0 0 0 c 0 0 0 12.4985 10.731 5.31146 3.50928 2.99489 2.84576 1.48065 6.82081 0 0 0 g 0 0 0 19.9976 18.4144 11.0217 4.83273 1.98756 1.85119 3.82852 6.68575 0 0 0 t 0 0 0 25.169 17.1695 24.5293 41.4883 37.2223 10.0325 42.6266 58.5557 0 0 0
M01691_2.00_shift3 (athp-3)				; positions_6nt_m1 versus M01691_2.00 (athp-3); m=7/32; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.545435; ---mrwwwat---- ; cor=; Ncor= a 0 0 0 27.2989 31.1542 40.9498 46.4798 58.2238 57.604 23.5345 0 0 0 0 c 0 0 0 27.5733 19.0859 10.6158 9.57368 12.8622 0.0723378 21.2949 0 0 0 0 g 0 0 0 24.7011 25.2531 18.3999 15.4718 1.41099 22.9563 4.84751 0 0 0 0 t 0 0 0 20.4268 24.5068 30.0345 28.4747 27.503 19.3674 50.3232 0 0 0 0
M07300_2.00_shift1 (lin-54)				; positions_6nt_m1 versus M07300_2.00 (lin-54); m=8/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.539499; -wTTyaAAATTyRA ; cor=; Ncor= a 0 42.9048 22.5376 10.0167 9.015 48.7479 93.3222 92.4875 85.8097 1.6694 0 0 72.621 100 c 0 8.1803 3.8397 6.8447 28.8815 22.0367 1.0017 2.3372 0 0.1669 0 53.0885 0.1669 0 g 0 10.1836 4.6745 0.1669 6.8447 17.8631 4.3406 0.1669 2.3372 1.1686 0 0 27.212 0 t 0 38.7312 68.9482 82.9716 55.2588 11.3523 1.3356 5.0083 11.8531 96.995 100 46.9115 0 0
M01688_2.00_shift3 (M01688_2.00)				; positions_6nt_m1 versus M01688_2.00; m=9/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.535435; ---awwwAwww--- ; cor=; Ncor= a 0 0 0 41.2581 38.386 41.1062 44.2483 80.5888 50.8656 34.0689 31.0543 0 0 0 c 0 0 0 18.1714 15.1453 4.28945 11.5862 0.182567 0.117559 7.60179 19.409 0 0 0 g 0 0 0 20.4881 18.3145 19.224 5.3112 7.76293 6.95309 6.47782 14.5231 0 0 0 t 0 0 0 20.0825 28.1541 35.3804 38.8542 11.4657 42.0638 51.8515 35.0136 0 0 0
M01106_2.00_shift3 (M01106_2.00)				; positions_6nt_m1 versus M01106_2.00; m=10/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.534555; ---aawwwAww--- ; cor=; Ncor= a 0 0 0 48.3861 55.0968 56.1595 51.3647 59.7236 76.3937 58.2011 38.0653 0 0 0 c 0 0 0 9.20009 14.0005 5.86027 4.01064 3.7424 3.69101 0.774067 2.03258 0 0 0 g 0 0 0 21.525 16.7616 11.4524 6.95145 3.09481 3.37333 2.78404 0.203784 0 0 0 t 0 0 0 20.8888 14.1412 26.5279 37.6733 33.4392 16.542 38.2408 59.6983 0 0 0
M07295_2.00_shift1 (lin-54)				; positions_6nt_m1 versus M07295_2.00 (lin-54); m=11/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.533488; -WTwaAAwATTyAA ; cor=; Ncor= a 0 26.2982 24.1206 39.6985 60.9715 77.5544 93.6348 56.2814 82.0771 0 0 0 86.2647 85.7621 c 0 2.0101 3.3501 18.7605 8.2077 10.8878 0 2.1776 0 0 0 32.4958 0 14.2379 g 0 3.1826 1.34 2.6801 7.5377 3.0151 5.0251 16.0804 2.6801 0 0 0 13.7353 0 t 0 68.5092 71.1893 38.861 23.2831 8.5427 1.34 25.4606 15.2429 100 100 67.5042 0 0
M07298_2.00_shift1 (lin-54)				; positions_6nt_m1 versus M07298_2.00 (lin-54); m=12/32; ncol2=15; w=-2; offset=-2; strand=D; shift=1; score=0.531841; -wTwwAAAATTYAA ; cor=; Ncor= a 0 32 15.8333 27.8333 36.5 73.5 90.5 77.6667 80.6667 0 0 0 80.3333 92.5 c 0 2.8333 2.6667 6.1667 11.5 9 0 0.5 0 0 0 28.1667 0 7.5 g 0 4.5 1 1.1667 7.6667 11.6667 7.1667 11 3.8333 0 0 0 19.6667 0 t 0 60.6667 80.5 64.8333 44.3333 5.8333 2.3333 10.8333 15.5 100 100 71.8333 0 0
M01517_2.00_shift3 (M01517_2.00)				; positions_6nt_m1 versus M01517_2.00; m=13/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.52532; ---wawwwAww--- ; cor=; Ncor= a 0 0 0 34.0141 40.2816 39.9077 33.2385 55.6169 80.1022 51.6361 29.702 0 0 0 c 0 0 0 17.7569 18.8384 14.6812 10.5245 0.0482426 0.0213501 0.0220205 7.4724 0 0 0 g 0 0 0 21.4725 22.7803 20.2179 16.8392 10.2624 1.08687 0.196758 6.49619 0 0 0 t 0 0 0 26.7564 18.0997 25.1931 39.3978 34.0724 18.7896 48.1452 56.3294 0 0 0
M07296_2.00_shift2 (lin-54)				; positions_6nt_m1 versus M07296_2.00 (lin-54); m=14/32; ncol2=15; w=-1; offset=-1; strand=D; shift=2; score=0.524798; --wttmAAATTyAA ; cor=; Ncor= a 0 0 37.5 24 22.8333 36.3333 83.1667 80.6667 77.6667 0 0.1667 0 79.8333 100 c 0 0 5.3333 13.5 18.3333 26 2.6667 1 0 0.1667 0 53 0 0 g 0 0 6.3333 0 7.6667 13.6667 13.1667 3 4 0.1667 0 0 20.1667 0 t 0 0 50.8333 62.5 51.1667 24 1 15.3333 18.3333 99.6667 99.8333 47 0 0
M07299_2.00_shift0 (lin-54)				; positions_6nt_m1 versus M07299_2.00 (lin-54); m=15/32; ncol2=15; w=-3; offset=-3; strand=D; shift=0; score=0.515028; wwwTwaAAATTYAA ; cor=; Ncor= a 51.5152 36.7424 26.8939 20.4545 32.5758 60.6061 86.3636 87.8788 92.4242 0 0 0 81.0606 100 c 5.6818 3.4091 4.1667 2.2727 14.3939 9.8485 0 0.3788 0 3.0303 0 26.1364 0 0 g 10.6061 10.6061 3.0303 3.4091 5.6818 15.5303 13.2576 6.0606 0 1.1364 0 0 17.0455 0 t 32.197 49.2424 65.9091 73.8636 47.3485 14.0152 0.3788 5.6818 7.5758 95.8333 100 73.8636 1.8939 0
M00008_2.00_shift4 (M00008_2.00)				; positions_6nt_m1 versus M00008_2.00; m=16/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.511636; ----awwaaww--- ; cor=; Ncor= a 0 0 0 0 28.2959 31.6659 37.7778 61.6393 67.5764 32.6032 32.1153 0 0 0 c 0 0 0 0 24.8465 18.4532 11.2652 6.89847 4.27703 13.3887 13.7266 0 0 0 g 0 0 0 0 24.5993 23.6944 20.9413 11.1484 6.31709 8.20227 11.2384 0 0 0 t 0 0 0 0 22.2583 26.1864 30.0157 20.3138 21.8294 45.8058 42.9198 0 0 0
M01671_2.00_shift2 (M01671_2.00)				; positions_6nt_m1 versus M01671_2.00; m=17/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.510372; --ssrrwAAwt--- ; cor=; Ncor= a 0 0 24.1564 20.939 34.5181 32.972 41.1309 71.0467 88.6835 45.4667 21.2559 0 0 0 c 0 0 26.697 30.6188 18.2011 17.9153 4.29202 4.77473 0.0920958 0.977243 17.7544 0 0 0 g 0 0 26.1683 25.0685 30.3102 25.1701 20.2217 0.0514748 4.50449 3.80753 9.74383 0 0 0 t 0 0 22.9783 23.3737 16.9706 23.9426 34.3554 24.1271 6.7199 49.7485 51.2458 0 0 0
M01105_2.00_shift2 (M01105_2.00)				; positions_6nt_m1 versus M01105_2.00; m=18/32; ncol2=9; w=-1; offset=-1; strand=D; shift=2; score=0.467369; --waarwwwww--- ; cor=; Ncor= a 0 0 37.434 33.1918 36.7239 39.8201 30.6146 57.2249 60.2371 50.597 33.1768 0 0 0 c 0 0 17.3324 23.625 21.1878 10.6374 17.3133 0.213737 9.28396 4.82539 9.60085 0 0 0 g 0 0 18.5892 21.5916 19.3642 25.3904 15.0515 14.9841 4.47402 5.95298 10.6106 0 0 0 t 0 0 26.6444 21.5916 22.7241 24.1521 37.0206 27.5772 26.005 38.6247 46.6117 0 0 0
M01104_2.00_shift1 (M01104_2.00)				; positions_6nt_m1 versus M01104_2.00; m=19/32; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.457878; -waaawwAwwh--- ; cor=; Ncor= a 0 27.5242 35.4896 39.3688 44.6255 36.9831 50.4457 79.6844 60.5595 29.6896 30.638 0 0 0 c 0 20.8023 19.4771 19.9449 10.1584 8.58882 4.48571 0.0336438 0.00624251 0.0115716 26.108 0 0 0 g 0 17.0315 22.6292 17.5135 22.608 12.3106 7.69751 0.0336438 0.0397012 2.88867 10.7214 0 0 0 t 0 34.642 22.404 23.1727 22.608 42.1174 37.3711 20.2484 39.3945 67.4102 32.5326 0 0 0
M01685_2.00_shift2 (M01685_2.00)				; positions_6nt_m1 versus M01685_2.00; m=20/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.456837; --mrrdwWww---- ; cor=; Ncor= a 0 0 29.5752 25.6034 36.9207 33.4398 40.8108 71.6329 60.4747 27.0214 0 0 0 0 c 0 0 28.9896 24.8467 13.996 13.3264 8.15758 0.214715 0.0299635 13.5533 0 0 0 0 g 0 0 22.5771 26.3831 27.3515 25.0218 17.6185 0.170598 13.9047 7.66473 0 0 0 0 t 0 0 18.858 23.1669 21.7317 28.212 33.4131 27.9818 25.5906 51.7606 0 0 0 0
M01692_2.00_shift2 (M01692_2.00)				; positions_6nt_m1 versus M01692_2.00; m=21/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.451119; --mdrawaRt---- ; cor=; Ncor= a 0 0 31.8198 25.6386 32.2138 33.0083 35.3662 54.031 70.8523 21.6909 0 0 0 0 c 0 0 26.3137 20.168 19.5387 19.0441 15.5764 7.23955 0.00976059 22.8031 0 0 0 0 g 0 0 21.979 26.4194 25.0882 23.4943 21.2373 15.6357 29.0959 10.0432 0 0 0 0 t 0 0 19.8875 27.774 23.1593 24.4532 27.8201 23.0937 0.0420287 45.4628 0 0 0 0
M06277_2.00_rc_shift1 (alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15_rc)				; positions_6nt_m1 versus M06277_2.00_rc (alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15_rc); m=22/32; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score=0.448648; -CAtTwAwaTT--- ; cor=; Ncor= a 0 8.33333 100 25 0 58.3333 83.3333 66.6667 41.6667 16.6667 0 0 0 0 c 0 83.3333 0 8.33333 0 0 0 0 25 8.33333 8.33333 0 0 0 g 0 8.33333 0 0 0 0 0 0 16.6667 0 16.6667 0 0 0 t 0 0 0 66.6667 100 41.6667 16.6667 33.3333 16.6667 75 75 0 0 0
M00206_2.00_shift2 (sox-2,sox-3,sox-4)				; positions_6nt_m1 versus M00206_2.00 (sox-2,sox-3,sox-4); m=23/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.446811; --araAcAAT---- ; cor=; Ncor= a 0 0 32.9744 31.5975 38.7559 69.6768 4.65359 99.7612 90.2273 22.1148 0 0 0 0 c 0 0 19.604 16.1687 18.491 5.8936 50.7869 0.129093 5.43213 3.54751 0 0 0 0 g 0 0 24.185 28.5906 21.4834 5.44048 19.8388 0.0814944 4.31601 3.08406 0 0 0 0 t 0 0 23.2367 23.6432 21.2697 18.9891 24.7207 0.0282342 0.0245347 71.2537 0 0 0 0
M00204_2.00_shift2 (sox-2,sox-3,sox-4)				; positions_6nt_m1 versus M00204_2.00 (sox-2,sox-3,sox-4); m=24/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.445352; --arawcAAT---- ; cor=; Ncor= a 0 0 30.4046 31.6486 34.7135 59.5861 7.84313 88.3669 90.2298 18.2652 0 0 0 0 c 0 0 20.7925 18.2597 19.436 7.2967 50.3822 2.53831 3.19747 6.32809 0 0 0 0 g 0 0 24.1575 26.1721 22.5814 6.34345 22.8657 0.0562189 5.48688 4.24185 0 0 0 0 t 0 0 24.6455 23.9195 23.2691 26.7738 18.909 9.03854 1.08585 71.1648 0 0 0 0
M00209_2.00_shift2 (sox-2,sox-3,sox-4)				; positions_6nt_m1 versus M00209_2.00 (sox-2,sox-3,sox-4); m=25/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.443724; --araAcAAT---- ; cor=; Ncor= a 0 0 29.8569 31.925 35.7639 67.9599 5.68531 93.1608 86.9014 18.3811 0 0 0 0 c 0 0 21.2512 17.5208 19.239 5.52298 55.5835 1.19045 2.62419 5.99739 0 0 0 0 g 0 0 24.6904 26.666 23.7347 5.63455 18.6881 0.0957828 8.1236 4.71771 0 0 0 0 t 0 0 24.2015 23.8883 21.2624 20.8826 20.0431 5.55294 2.35084 70.9038 0 0 0 0
M01677_2.00_shift2 (M01677_2.00)				; positions_6nt_m1 versus M01677_2.00; m=26/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.440485; --mkrawaRh---- ; cor=; Ncor= a 0 0 37.7279 24.75 34.3177 34.0293 34.6936 57.6007 73.2846 25.3553 0 0 0 0 c 0 0 27.1235 20.2636 17.7371 17.7648 15.4337 3.33187 0.000129006 25.8675 0 0 0 0 g 0 0 19.4997 27.0808 25.1702 24.4645 21.4679 17.8773 26.6916 6.12874 0 0 0 0 t 0 0 15.6489 27.9056 22.7749 23.7414 28.4048 21.1901 0.0236203 42.6484 0 0 0 0
M00197_2.00_shift2 (sox-2,sox-3,sox-4)				; positions_6nt_m1 versus M00197_2.00 (sox-2,sox-3,sox-4); m=27/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.434572; --rrawcAAT---- ; cor=; Ncor= a 0 0 31.2219 31.5226 42.5231 60.2919 5.82109 97.1833 89.0196 18.0233 0 0 0 0 c 0 0 20.108 16.1304 16.6107 4.30251 50.4755 1.64312 3.12319 5.21565 0 0 0 0 g 0 0 25.3079 28.5228 21.7594 2.97189 24.569 0.0386425 7.837 4.40026 0 0 0 0 t 0 0 23.3622 23.8242 19.1068 32.4337 19.1344 1.13496 0.0202188 72.3608 0 0 0 0
M00203_2.00_rc_shift2 (sox-2,sox-3,sox-4_rc)				; positions_6nt_m1 versus M00203_2.00_rc (sox-2,sox-3,sox-4_rc); m=28/32; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.433523; --rrrAcAAT---- ; cor=; Ncor= a 0 0 32.506 26.7073 47.1419 84.5992 4.87858 95.8464 84.7024 15.0993 0 0 0 0 c 0 0 17.6621 16.6921 13.9177 3.41414 67.6843 0.0489354 3.66616 7.49807 0 0 0 0 g 0 0 28.2593 34.2928 27.1985 3.58919 11.0768 0.534057 10.2692 6.26292 0 0 0 0 t 0 0 21.5726 22.3078 11.7419 8.39743 16.3603 3.57065 1.36226 71.1397 0 0 0 0
M01679_2.00_shift2 (M01679_2.00)				; positions_6nt_m1 versus M01679_2.00; m=29/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.432264; --WWAwAwAT---- ; cor=; Ncor= a 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 0 0 0 c 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 0 g 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 0 t 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0 0 0 0
M00613_2.00_rc_shift2 (lin-29_rc)				; positions_6nt_m1 versus M00613_2.00_rc (lin-29_rc); m=30/32; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.426737; --gAAAAAAa---- ; cor=; Ncor= a 0 0 24.2861 77.7565 83.8146 98.96 98.96 91.8922 71.8555 56.9619 0 0 0 0 c 0 0 15.7196 9.09733 6.06826 0.0100969 0.0100969 3.03918 15.6289 12.7964 0 0 0 0 g 0 0 42.8469 3.03918 2.02948 0.0100969 0.0100969 1.01979 8.34027 10.4719 0 0 0 0 t 0 0 17.1473 10.107 8.08764 1.01979 1.01979 4.04887 4.17534 19.7699 0 0 0 0
M01107_2.00_shift2 (M01107_2.00)				; positions_6nt_m1 versus M01107_2.00; m=31/32; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.423786; --aAawwAww---- ; cor=; Ncor= a 0 0 62.5139 68.9816 66.0471 52.4467 52.5023 76.1535 59.0061 34.2342 0 0 0 0 c 0 0 1.48496 7.95531 3.00527 2.77263 3.1609 4.77193 5.04118 2.78215 0 0 0 0 g 0 0 17.9105 10.9555 6.89205 3.5247 3.03696 4.44932 4.21075 4.82217 0 0 0 0 t 0 0 18.0905 12.1077 24.0556 41.256 41.2998 14.6253 31.742 58.1615 0 0 0 0
M00208_2.00_rc_shift1 (sox-2,sox-3,sox-4_rc)				; positions_6nt_m1 versus M00208_2.00_rc (sox-2,sox-3,sox-4_rc); m=32/32; ncol2=9; w=-2; offset=-2; strand=R; shift=1; score=0.405714; -varaacAAt---- ; cor=; Ncor= a 0 25.2444 29.7331 31.449 34.8399 60.3397 7.68003 87.0814 82.9432 22.913 0 0 0 0 c 0 25.2444 21.8077 18.1445 20.507 7.76783 47.8765 2.08933 5.51877 8.01813 0 0 0 0 g 0 25.4981 24.8352 27.3404 22.4382 7.8459 20.6688 3.0859 8.74215 8.01813 0 0 0 0 t 0 24.0132 23.624 23.0661 22.2149 24.0465 23.7747 7.74342 2.7959 61.0507 0 0 0 0