One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift4 ; 62 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift4 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=10; shift=4; ncol=14; ----twAAAAAAww ; Alignment reference a 0 0 0 0 115 130 507 507 507 507 507 507 130 182 c 0 0 0 0 104 118 0 0 0 0 0 0 60 108 g 0 0 0 0 119 105 0 0 0 0 0 0 56 46 t 0 0 0 0 169 154 0 0 0 0 0 0 261 171
M00627_2.00_rc_shift4 (K11D2.4_rc)				; positions_6nt_m2 versus M00627_2.00_rc (K11D2.4_rc); m=1/61; ncol2=10; w=0; offset=0; strand=R; shift=4; score=0.911333; ----akAAAAAasw ; cor=; Ncor= a 0 0 0 0 52.8741 23.5058 85.3694 91.8917 94.5718 92.9401 96.0132 45.9014 18.1025 29.2221 c 0 0 0 0 23.9966 7.74654 1.51738 1.87876 0.979571 1.82568 1.8121 19.8161 27.2772 21.2196 g 0 0 0 0 15.4547 34.0301 4.46821 1.41993 1.50585 1.4077 0.433651 18.8497 31.3762 17.9023 t 0 0 0 0 7.67458 34.7176 8.64505 4.80959 2.94279 3.82652 1.74105 15.4328 23.2441 31.656
M00613_2.00_rc_shift5 (lin-29_rc)				; positions_6nt_m2 versus M00613_2.00_rc (lin-29_rc); m=2/61; ncol2=8; w=0; offset=1; strand=R; shift=5; score=0.759135; -----gAAAAAAa- ; cor=; Ncor= a 0 0 0 0 0 24.2861 77.7565 83.8146 98.96 98.96 91.8922 71.8555 56.9619 0 c 0 0 0 0 0 15.7196 9.09733 6.06826 0.0100969 0.0100969 3.03918 15.6289 12.7964 0 g 0 0 0 0 0 42.8469 3.03918 2.02948 0.0100969 0.0100969 1.01979 8.34027 10.4719 0 t 0 0 0 0 0 17.1473 10.107 8.08764 1.01979 1.01979 4.04887 4.17534 19.7699 0
M01104_2.00_shift4 (M01104_2.00)				; positions_6nt_m2 versus M01104_2.00; m=3/61; ncol2=10; w=0; offset=0; strand=D; shift=4; score=0.723969; ----waaawwAwwh ; cor=; Ncor= a 0 0 0 0 27.5242 35.4896 39.3688 44.6255 36.9831 50.4457 79.6844 60.5595 29.6896 30.638 c 0 0 0 0 20.8023 19.4771 19.9449 10.1584 8.58882 4.48571 0.0336438 0.00624251 0.0115716 26.108 g 0 0 0 0 17.0315 22.6292 17.5135 22.608 12.3106 7.69751 0.0336438 0.0397012 2.88867 10.7214 t 0 0 0 0 34.642 22.404 23.1727 22.608 42.1174 37.3711 20.2484 39.3945 67.4102 32.5326
M00258_2.00_shift3 (fkh-2,fkh-6,unc-130)				; positions_6nt_m2 versus M00258_2.00 (fkh-2,fkh-6,unc-130); m=4/61; ncol2=11; w=-1; offset=-1; strand=D; shift=3; score=0.675541; ---catamAAyAag ; cor=; Ncor= a 0 0 0 22.5433 39.6289 12.8087 67.6798 60.8196 78.6392 70.8551 9.70097 83.2678 45.0459 22.6671 c 0 0 0 32.37 19.479 21.478 9.85135 28.471 9.34316 9.35625 49.9877 2.48136 24.5101 22.6671 g 0 0 0 22.5433 21.771 24.1525 11.993 0.0246932 0.0246932 0.0246932 9.34316 2.48136 15.222 31.9987 t 0 0 0 22.5433 19.1212 41.5607 10.4758 10.6847 11.993 19.7639 30.9682 11.7695 15.222 22.6671
M01686_2.00_shift4 (M01686_2.00)				; positions_6nt_m2 versus M01686_2.00; m=5/61; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.661685; ----wwawwwAww- ; cor=; Ncor= a 0 0 0 0 35.3239 29.1909 47.9754 35.3839 43.2302 38.9749 86.2322 51.9591 36.5816 0 c 0 0 0 0 18.4407 20.986 15.3435 15.7408 7.07479 10.0033 0.0496401 3.38873 9.29563 0 g 0 0 0 0 20.585 17.8831 20.7115 19.6143 19.2313 6.1899 8.47435 8.76228 8.08123 0 t 0 0 0 0 25.6504 31.9399 15.9696 29.261 30.4638 44.8318 5.24379 35.8899 46.0416 0
M01107_2.00_shift6 (M01107_2.00)				; positions_6nt_m2 versus M01107_2.00; m=6/61; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.660766; ------aAawwAww ; cor=; Ncor= a 0 0 0 0 0 0 62.5139 68.9816 66.0471 52.4467 52.5023 76.1535 59.0061 34.2342 c 0 0 0 0 0 0 1.48496 7.95531 3.00527 2.77263 3.1609 4.77193 5.04118 2.78215 g 0 0 0 0 0 0 17.9105 10.9555 6.89205 3.5247 3.03696 4.44932 4.21075 4.82217 t 0 0 0 0 0 0 18.0905 12.1077 24.0556 41.256 41.2998 14.6253 31.742 58.1615
M01106_2.00_shift5 (M01106_2.00)				; positions_6nt_m2 versus M01106_2.00; m=7/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.658895; -----aawwwAww- ; cor=; Ncor= a 0 0 0 0 0 48.3861 55.0968 56.1595 51.3647 59.7236 76.3937 58.2011 38.0653 0 c 0 0 0 0 0 9.20009 14.0005 5.86027 4.01064 3.7424 3.69101 0.774067 2.03258 0 g 0 0 0 0 0 21.525 16.7616 11.4524 6.95145 3.09481 3.37333 2.78404 0.203784 0 t 0 0 0 0 0 20.8888 14.1412 26.5279 37.6733 33.4392 16.542 38.2408 59.6983 0
M01108_2.00_shift5 (M01108_2.00)				; positions_6nt_m2 versus M01108_2.00; m=8/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.653247; -----waawwAww- ; cor=; Ncor= a 0 0 0 0 0 42.3349 53.6851 59.1376 50.1697 57.7953 85.2706 52.0642 27.9377 0 c 0 0 0 0 0 12.4985 10.731 5.31146 3.50928 2.99489 2.84576 1.48065 6.82081 0 g 0 0 0 0 0 19.9976 18.4144 11.0217 4.83273 1.98756 1.85119 3.82852 6.68575 0 t 0 0 0 0 0 25.169 17.1695 24.5293 41.4883 37.2223 10.0325 42.6266 58.5557 0
M01105_2.00_shift4 (M01105_2.00)				; positions_6nt_m2 versus M01105_2.00; m=9/61; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.651778; ----waarwwwww- ; cor=; Ncor= a 0 0 0 0 37.434 33.1918 36.7239 39.8201 30.6146 57.2249 60.2371 50.597 33.1768 0 c 0 0 0 0 17.3324 23.625 21.1878 10.6374 17.3133 0.213737 9.28396 4.82539 9.60085 0 g 0 0 0 0 18.5892 21.5916 19.3642 25.3904 15.0515 14.9841 4.47402 5.95298 10.6106 0 t 0 0 0 0 26.6444 21.5916 22.7241 24.1521 37.0206 27.5772 26.005 38.6247 46.6117 0
M03046_2.00_shift4 (fkh-2)				; positions_6nt_m2 versus M03046_2.00 (fkh-2); m=10/61; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.646117; ----rTAAAcAA-- ; cor=; Ncor= a 0 0 0 0 45.3438 12.9527 91.046 92.2151 90.047 23.4165 99.3945 70.5774 0 0 c 0 0 0 0 0 4.91099 3.56577 0.963082 0 55.1344 0 9.09091 0 0 g 0 0 0 0 54.6562 11.6022 3.09033 2.16693 4.62382 14.3954 0.605536 7.55528 0 0 t 0 0 0 0 0 70.5341 2.29794 4.6549 5.32915 7.05374 0 12.7764 0 0
M01671_2.00_shift4 (M01671_2.00)				; positions_6nt_m2 versus M01671_2.00; m=11/61; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.640717; ----ssrrwAAwt- ; cor=; Ncor= a 0 0 0 0 24.1564 20.939 34.5181 32.972 41.1309 71.0467 88.6835 45.4667 21.2559 0 c 0 0 0 0 26.697 30.6188 18.2011 17.9153 4.29202 4.77473 0.0920958 0.977243 17.7544 0 g 0 0 0 0 26.1683 25.0685 30.3102 25.1701 20.2217 0.0514748 4.50449 3.80753 9.74383 0 t 0 0 0 0 22.9783 23.3737 16.9706 23.9426 34.3554 24.1271 6.7199 49.7485 51.2458 0
M06203_2.00_shift0 (fkh-7)				; positions_6nt_m2 versus M06203_2.00 (fkh-7); m=12/61; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.637156; mmmmarAAAAAAws ; cor=; Ncor= a 33.7066 33.6656 32.2296 31.5673 42.1634 49.3377 96.0265 99.5585 100 99.117 100 98.6755 44.9227 12.792 c 27.8835 32.2259 26.4901 27.8146 21.0817 5.96026 0 0 0 0 0 0.993377 7.28477 37.3749 g 24.86 19.0476 20.9713 20.3091 15.011 31.7881 0.993377 0 0 0.883002 0 0.331126 3.31126 34.2603 t 13.5498 15.0609 20.3091 20.3091 21.7439 12.9139 2.98013 0.441501 0 0 0 0 44.4812 15.5729
M06202_2.00_shift0 (fkh-7)				; positions_6nt_m2 versus M06202_2.00 (fkh-7); m=13/61; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score=0.636126; aarrbyAAAAAAAt ; cor=; Ncor= a 59.0909 54.5455 36.3636 45.4545 9.09091 4.54545 90.9091 100 100 100 100 100 100 18.1818 c 18.1818 13.6364 13.6364 22.7273 36.3636 40.9091 0 0 0 0 0 0 0 4.54545 g 22.7273 18.1818 36.3636 27.2727 27.2727 18.1818 9.09091 0 0 0 0 0 0 18.1818 t 0 13.6364 13.6364 4.54545 27.2727 36.3636 0 0 0 0 0 0 0 59.0909
M01674_2.00_shift4 (M01674_2.00)				; positions_6nt_m2 versus M01674_2.00; m=14/61; ncol2=9; w=0; offset=0; strand=D; shift=4; score=0.630277; ----rcawwwwar- ; cor=; Ncor= a 0 0 0 0 37.4501 22.6206 60.6765 42.8552 47.592 40.0042 33.7415 54.6503 46.2607 0 c 0 0 0 0 13.7771 27.6289 5.67208 11.1098 4.67704 9.96406 20.2616 7.24966 4.07264 0 g 0 0 0 0 37.8264 24.9996 23.0014 20.042 20.546 15.9424 11.5736 22.4425 31.9538 0 t 0 0 0 0 10.9464 24.7509 10.65 25.993 27.185 34.0893 34.4232 15.6576 17.7129 0
M00750_2.00_shift5 (M00750_2.00)				; positions_6nt_m2 versus M00750_2.00; m=15/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.62677; -----AAAwAaAt- ; cor=; Ncor= a 0 0 0 0 0 75 80 73.3333 26.6667 73.3333 66.6667 69.2308 16.6667 0 c 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 g 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 t 0 0 0 0 0 8.33333 6.66667 13.3333 60 13.3333 20 15.3846 66.6667 0
M01680_2.00_shift6 (M01680_2.00)				; positions_6nt_m2 versus M01680_2.00; m=16/61; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.604518; ------AAAATAAA ; cor=; Ncor= a 0 0 0 0 0 0 99.0132 99.2574 99.2574 99.2574 25 99.2574 99.2574 99.0132 c 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 g 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 t 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 74.505 0.247525 0.247525 0.328947
M01679_2.00_shift5 (M01679_2.00)				; positions_6nt_m2 versus M01679_2.00; m=17/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.602018; -----WWAwAwAT- ; cor=; Ncor= a 0 0 0 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 c 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 g 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 t 0 0 0 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0
M01226_2.00_shift5 (M01226_2.00)				; positions_6nt_m2 versus M01226_2.00; m=18/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.595666; -----aAwAACAw- ; cor=; Ncor= a 0 0 0 0 0 52.7071 80.9169 65.5996 98.3916 99.9532 4.70019 96.8301 57.4675 0 c 0 0 0 0 0 23.6374 1.60216 9.38476 1.57714 0.0156152 78.0918 0.0156152 7.51748 0 g 0 0 0 0 0 23.6374 0.0158629 0.0156152 0.0156152 0.0156152 0.0156152 0.0156152 7.51748 0 t 0 0 0 0 0 0.0181686 17.4651 25 0.0156152 0.0156152 17.1924 3.13866 27.4975 0
M01688_2.00_shift6 (M01688_2.00)				; positions_6nt_m2 versus M01688_2.00; m=19/61; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.58698; ------awwwAwww ; cor=; Ncor= a 0 0 0 0 0 0 41.2581 38.386 41.1062 44.2483 80.5888 50.8656 34.0689 31.0543 c 0 0 0 0 0 0 18.1714 15.1453 4.28945 11.5862 0.182567 0.117559 7.60179 19.409 g 0 0 0 0 0 0 20.4881 18.3145 19.224 5.3112 7.76293 6.95309 6.47782 14.5231 t 0 0 0 0 0 0 20.0825 28.1541 35.3804 38.8542 11.4657 42.0638 51.8515 35.0136
M08213_2.00_shift6 (mef-2)				; positions_6nt_m2 versus M08213_2.00 (mef-2); m=20/61; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.586318; ------AAAATAgc ; cor=; Ncor= a 0 0 0 0 0 0 80.9412 88.353 86.4705 84.7059 12.2353 88 15.8824 22.9412 c 0 0 0 0 0 0 4.5882 2.8235 3.8824 3.6471 7.7647 0.5882 9.17649 58.9411 g 0 0 0 0 0 0 7.7647 4.5882 3.7647 4.8235 7.0588 5.4118 67.5293 7.88239 t 0 0 0 0 0 0 6.7059 4.2353 5.88239 6.8235 72.9412 6 7.41179 10.2353
M09572_2.00_rc_shift3 (M09572_2.00_rc)				; positions_6nt_m2 versus M09572_2.00_rc; m=21/61; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.57887; ---GymATAAAay- ; cor=; Ncor= a 0 0 0 20.9 0.1 48.9 99.7 0.1 99.7 99.7 99.7 67.8 24.3 0 c 0 0 0 5.8 44.4 49.3 0.1 0.1 0.1 0.1 0.1 11.5 28.5 0 g 0 0 0 73.3 0.1 0.1 0.1 0.1 0.1 0.1 0.1 7.3 15.4 0 t 0 0 0 0.1 55.4 1.7 0.1 99.7 0.1 0.1 0.1 13.5 31.8 0
M05114_2.00_rc_shift3 (php-3_rc)				; positions_6nt_m2 versus M05114_2.00_rc (php-3_rc); m=22/61; ncol2=10; w=-1; offset=-1; strand=R; shift=3; score=0.576516; ---GymATAAAAy- ; cor=; Ncor= a 0 0 0 2.08132 0 66.1914 100 1.91147 85.0044 100 99.8464 80.8458 20.5747 0 c 0 0 0 0 36.6855 32.9939 0 0 0 0 0.15361 9.16252 40.1744 0 g 0 0 0 94.3853 0 0.814664 0 0 0 0 0 3.93864 12.7245 0 t 0 0 0 3.5334 63.3145 0 0 98.0885 14.9956 0 0 6.05307 26.5264 0
M00654_2.00_rc_shift6 (mab-23_rc)				; positions_6nt_m2 versus M00654_2.00_rc (mab-23_rc); m=23/61; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.576436; ------ryraawwt ; cor=; Ncor= a 0 0 0 0 0 0 27.2171 24.6535 60.2373 53.36 54.9449 45.2693 27.4258 19.9192 c 0 0 0 0 0 0 23.8992 32.2952 5.09517 20.0266 10.1384 8.78133 11.7222 18.5725 g 0 0 0 0 0 0 26.1499 11.0775 27.0664 15.2879 11.8975 11.7356 21.1467 21.7951 t 0 0 0 0 0 0 22.7337 31.9738 7.6011 11.3255 23.0192 34.2138 39.7053 39.7132
M01687_2.00_shift5 (M01687_2.00)				; positions_6nt_m2 versus M01687_2.00; m=24/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.571368; -----AAAWTAAT- ; cor=; Ncor= a 0 0 0 0 0 83.9058 88.161 83.2686 69.3951 16.6759 83.2686 76.4101 18.5281 0 c 0 0 0 0 0 0.0399361 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 2.9671 3.73521 0 g 0 0 0 0 0 12.0208 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 0.0293772 0.0369822 0 t 0 0 0 0 0 4.03355 11.7803 16.6759 30.5494 83.2686 16.6759 20.5934 77.6997 0
M01517_2.00_shift5 (M01517_2.00)				; positions_6nt_m2 versus M01517_2.00; m=25/61; ncol2=8; w=0; offset=1; strand=D; shift=5; score=0.567636; -----wawwwAww- ; cor=; Ncor= a 0 0 0 0 0 34.0141 40.2816 39.9077 33.2385 55.6169 80.1022 51.6361 29.702 0 c 0 0 0 0 0 17.7569 18.8384 14.6812 10.5245 0.0482426 0.0213501 0.0220205 7.4724 0 g 0 0 0 0 0 21.4725 22.7803 20.2179 16.8392 10.2624 1.08687 0.196758 6.49619 0 t 0 0 0 0 0 26.7564 18.0997 25.1931 39.3978 34.0724 18.7896 48.1452 56.3294 0
M05341_2.00_rc_shift2 (php-3_rc)				; positions_6nt_m2 versus M05341_2.00_rc (php-3_rc); m=26/61; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.546991; --rGymATAAAAc- ; cor=; Ncor= a 0 0 28.4666 0 0 67.4123 100 4.503 94.1467 99.6173 100 95.5289 19.4969 0 c 0 0 12.2599 0 46.1753 32.5877 0 0 0 0.208768 0 1.66834 45.5276 0 g 0 0 46.1404 100 0 0 0 0 0 0.173974 0 0 11.4605 0 t 0 0 13.1331 0 53.8247 0 0 95.497 5.85334 0 0 2.8028 23.515 0
M05117_2.00_shift2 (php-3)				; positions_6nt_m2 versus M05117_2.00 (php-3); m=27/61; ncol2=11; w=-2; offset=-2; strand=D; shift=2; score=0.542774; --grymATAAAAh- ; cor=; Ncor= a 0 0 22.9161 33.1789 2.23572 67.5634 98.1169 5.1393 87.2968 99.9427 97.7324 82.9807 33.6293 0 c 0 0 10.0831 10.0556 31.4656 30.2303 0.140528 0 0 0.0572574 0 6.8695 33.1997 0 g 0 0 55.3423 53.9234 1.40767 1.35475 1.74255 0.432783 0 0 0.167973 3.56549 8.1352 0 t 0 0 11.6586 2.84214 64.891 0.851558 0 94.4279 12.7032 0 2.09966 6.58426 25.0358 0
M03135_2.00_rc_shift3 (ceh-12,php-3_rc)				; positions_6nt_m2 versus M03135_2.00_rc (ceh-12,php-3_rc); m=28/61; ncol2=9; w=-1; offset=-1; strand=R; shift=3; score=0.536784; ---gyAATAAAA-- ; cor=; Ncor= a 0 0 0 18.1119 1.02681 74.4832 89.3568 11.6416 84.6756 97.574 97.3543 77.8879 0 0 c 0 0 0 11.7285 38.5625 11.9509 1.18832 0 1.12607 0.0846262 1.12581 8.57915 0 0 g 0 0 0 66.5064 0.34227 11.025 7.98243 0.0510595 0.709914 0.0564175 0.168871 5.56181 0 0 t 0 0 0 3.65314 60.0685 2.54091 1.47249 88.3074 13.4884 2.28491 1.35097 7.97118 0 0
M03206_2.00_shift3 (php-3)				; positions_6nt_m2 versus M03206_2.00 (php-3); m=29/61; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.536234; ---gYaATAAAA-- ; cor=; Ncor= a 0 0 0 9.65944 0.627178 67.518 92.9666 11.3384 84.647 99.23 91.6444 75.5311 0 0 c 0 0 0 19.257 27.4564 14.6693 4.95942 0.767263 0.574713 0 4.53333 8.13187 0 0 g 0 0 0 63.839 0.0696864 16.8304 1.62308 0 0.246305 0 1.51111 7.98535 0 0 t 0 0 0 7.24458 71.8467 0.982318 0.450857 87.8943 14.532 0.769971 2.31111 8.35165 0 0
M05119_2.00_shift2 (php-3)				; positions_6nt_m2 versus M05119_2.00 (php-3); m=30/61; ncol2=11; w=-2; offset=-2; strand=D; shift=2; score=0.535485; --gGYAATAAAAh- ; cor=; Ncor= a 0 0 23.2891 9.95851 0 77.8219 100 2.1978 91.5809 100 99.5931 88.7579 29.6221 0 c 0 0 11.5424 8.79668 30.4392 22.1781 0 0 0 0 0 9.15684 34.525 0 g 0 0 50.8682 81.2448 0 0 0 0 0 0 0 2.08522 8.27375 0 t 0 0 14.3003 0 69.5608 0 0 97.8022 8.41908 0 0.406918 0 27.5792 0
M05395_2.00_rc_shift2 (php-3_rc)				; positions_6nt_m2 versus M05395_2.00_rc (php-3_rc); m=31/61; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.534648; --gGymATAAAAm- ; cor=; Ncor= a 0 0 19.511 5.65533 0 66.6963 99.2672 1.43147 89.1947 100 99.9154 85.0716 29.735 0 c 0 0 9.82813 1.38316 38.8708 31.4553 0 0 0 0 0.0846433 6.3832 32.7484 0 g 0 0 60.4696 92.1695 0.108814 0.968601 0.732821 0 0 0 0 4.02553 14.6073 0 t 0 0 10.1912 0.791969 61.0204 0.879813 0 98.5685 10.8053 0 0 4.51972 22.9094 0
M05397_2.00_rc_shift2 (php-3_rc)				; positions_6nt_m2 versus M05397_2.00_rc (php-3_rc); m=32/61; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.531013; --gGymATAAAAc- ; cor=; Ncor= a 0 0 21.045 6.6766 0 66.0948 99.4622 5.32423 83.0042 98.8596 99.3553 73.5419 24.297 0 c 0 0 18.1261 6.05067 40.1512 31.6893 0 0 0.179533 0 0.644699 10.6045 37.0584 0 g 0 0 48.8649 82.6826 0.10803 0.476531 0.537827 0 0.867744 0.0712758 0 5.27572 13.951 0 t 0 0 11.964 4.59016 59.7407 1.73934 0 94.6758 15.9485 1.06914 0 10.5779 24.6936 0
M00070_2.00_shift5 (sox-2,sox-3,sox-4)				; positions_6nt_m2 versus M00070_2.00 (sox-2,sox-3,sox-4); m=33/61; ncol2=11; w=0; offset=1; strand=D; shift=5; score=0.527574; -----hrAACAATw ; cor=; Ncor= a 0 0 0 0 0 26.8573 50.9793 84.8016 99.9893 0.00358234 90.3786 99.9893 0.00358234 59.126 c 0 0 0 0 0 27.2224 9.8806 5.06614 0.00358234 90.3786 0.00358234 0.00358234 0.00358234 7.11547 g 0 0 0 0 0 17.8881 29.2595 5.06614 0.00358234 0.00358234 0.00358234 0.00358234 0.00358234 7.11547 t 0 0 0 0 0 28.0322 9.8806 5.06614 0 9.61423 9.61423 0 99.9893 26.6431
M05339_2.00_rc_shift2 (php-3_rc)				; positions_6nt_m2 versus M05339_2.00_rc (php-3_rc); m=34/61; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.527221; --gGymATAAAAy- ; cor=; Ncor= a 0 0 22.6127 5.74952 0 63.9614 99.3696 1.03513 88.3101 100 100 78.5666 21.8107 0 c 0 0 15.0351 0.256246 46.2963 36.0386 0 0 0 0 0 9.26849 38.4259 0 g 0 0 46.4255 93.4017 0 0 0.630431 0 0 0 0 4.27051 13.9918 0 t 0 0 15.9266 0.592569 53.7037 0 0 98.9649 11.6899 0 0 7.89438 25.7716 0
M04830_2.00_shift1 (fkh-2,fkh-8)				; positions_6nt_m2 versus M04830_2.00 (fkh-2,fkh-8); m=35/61; ncol2=12; w=-3; offset=-3; strand=D; shift=1; score=0.526643; -AAyrTAAACAAw- ; cor=; Ncor= a 0 85.8696 80.0866 14.1304 35.6923 12.0172 89.372 89.8058 92.0398 13.0612 85.2535 82.5893 26.4865 0 c 0 4.8913 9.09091 45.1087 6.15385 0 5.31401 0 5.47264 75.5102 4.60829 4.91071 11.3514 0 g 0 0.543478 6.06061 3.26087 56.9231 8.58369 3.38164 0.485437 0 2.85714 5.52995 2.23214 4.32432 0 t 0 8.69565 4.7619 37.5 1.23077 79.3991 1.93237 9.70874 2.48756 8.57143 4.60829 10.2679 57.8378 0
M05337_2.00_rc_shift2 (php-3_rc)				; positions_6nt_m2 versus M05337_2.00_rc (php-3_rc); m=36/61; ncol2=11; w=-2; offset=-2; strand=R; shift=2; score=0.526059; --gGymATAAAAc- ; cor=; Ncor= a 0 0 19.8486 7.35184 0 60.3247 100 2.13992 90.6941 99.3317 99.8321 75.6843 18.587 0 c 0 0 21.9512 1.80045 45.8754 39.5231 0 0 0 0.668338 0 13.4309 40.286 0 g 0 0 43.9024 89.1973 0 0.152207 0 0 0 0 0.167926 3.50095 20.6056 0 t 0 0 14.2977 1.65041 54.1246 0 0 97.8601 9.30587 0 0 7.38383 20.5214 0
M06201_2.00_shift3 (fkh-7)				; positions_6nt_m2 versus M06201_2.00 (fkh-7); m=37/61; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.521228; ---vrTAAACAA-- ; cor=; Ncor= a 0 0 0 31.5789 50 4.7619 100 95.2381 100 0 100 71.4286 0 0 c 0 0 0 26.3158 10 9.52381 0 0 0 85.7143 0 9.52381 0 0 g 0 0 0 42.1053 40 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 85.7143 0 4.7619 0 14.2857 0 19.0476 0 0
M09107_2.00_shift3 (M09107_2.00)				; positions_6nt_m2 versus M09107_2.00; m=38/61; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.51786; ---mrWAAACAA-- ; cor=; Ncor= a 0 0 0 53.012 43.3735 25.3012 85.1406 100 100 0 100 74.6988 0 0 c 0 0 0 36.1446 18.0723 3.61446 14.8594 0 0 100 0 10.8434 0 0 g 0 0 0 10.8434 34.9398 0 0 0 0 0 0 10.8434 0 0 t 0 0 0 0 3.61446 71.0843 0 0 0 0 0 3.61446 0 0
M01691_2.00_shift6 (athp-3)				; positions_6nt_m2 versus M01691_2.00 (athp-3); m=39/61; ncol2=7; w=0; offset=2; strand=D; shift=6; score=0.510896; ------mrwwwat- ; cor=; Ncor= a 0 0 0 0 0 0 27.2989 31.1542 40.9498 46.4798 58.2238 57.604 23.5345 0 c 0 0 0 0 0 0 27.5733 19.0859 10.6158 9.57368 12.8622 0.0723378 21.2949 0 g 0 0 0 0 0 0 24.7011 25.2531 18.3999 15.4718 1.41099 22.9563 4.84751 0 t 0 0 0 0 0 0 20.4268 24.5068 30.0345 28.4747 27.503 19.3674 50.3232 0
M00008_2.00_shift7 (M00008_2.00)				; positions_6nt_m2 versus M00008_2.00; m=40/61; ncol2=7; w=0; offset=3; strand=D; shift=7; score=0.507999; -------awwaaww ; cor=; Ncor= a 0 0 0 0 0 0 0 28.2959 31.6659 37.7778 61.6393 67.5764 32.6032 32.1153 c 0 0 0 0 0 0 0 24.8465 18.4532 11.2652 6.89847 4.27703 13.3887 13.7266 g 0 0 0 0 0 0 0 24.5993 23.6944 20.9413 11.1484 6.31709 8.20227 11.2384 t 0 0 0 0 0 0 0 22.2583 26.1864 30.0157 20.3138 21.8294 45.8058 42.9198
M07439_2.00_shift7 (M07439_2.00)				; positions_6nt_m2 versus M07439_2.00; m=41/61; ncol2=9; w=0; offset=3; strand=D; shift=7; score=0.500406; -------awAAATw ; cor=; Ncor= a 0 0 0 0 0 0 0 59 61.6162 76 92 100 0 34 c 0 0 0 0 0 0 0 11 5.05051 0 0 0 0 2 g 0 0 0 0 0 0 0 15 5.05051 0 0 0 0 2 t 0 0 0 0 0 0 0 15 28.2828 24 8 0 100 62
M08479_2.00_shift7 (M08479_2.00)				; positions_6nt_m2 versus M08479_2.00; m=42/61; ncol2=9; w=0; offset=3; strand=D; shift=7; score=0.49966; -------awAAATw ; cor=; Ncor= a 0 0 0 0 0 0 0 59 61 76 92 100 0 34 c 0 0 0 0 0 0 0 11 5 0 0 0 0 2 g 0 0 0 0 0 0 0 15 5 0 0 0 0 2 t 0 0 0 0 0 0 0 15 29 24 8 0 100 62
M10565_2.00_shift5 (fkh-2,unc-130)				; positions_6nt_m2 versus M10565_2.00 (fkh-2,unc-130); m=43/61; ncol2=12; w=0; offset=1; strand=D; shift=5; score=0.491528; -----rAayAAAyA ; cor=; Ncor= a 0 0 0 0 0 65.625 78.125 65.625 21.875 68.75 96.875 100 3.125 90.625 c 0 0 0 0 0 0 12.5 3.125 43.75 15.625 0 0 65.625 0 g 0 0 0 0 0 31.25 6.25 15.625 0 0 0 0 0 6.25 t 0 0 0 0 0 3.125 3.125 15.625 34.375 15.625 3.125 0 31.25 3.125
M03736_2.00_shift1 (fkh-2)				; positions_6nt_m2 versus M03736_2.00 (fkh-2); m=44/61; ncol2=12; w=-3; offset=-3; strand=D; shift=1; score=0.485679; -wayrTAAACAaa- ; cor=; Ncor= a 0 42.5591 61.5005 11.0754 54.1139 3.0888 97.3437 96.7391 96.2906 0 99.362 65.9711 58.1059 0 c 0 8.90125 8.39092 26.9663 0 16.731 2.65625 0.15528 3.40031 77.4876 0.637959 8.66774 9.95185 0 g 0 4.45063 15.8934 2.24719 44.6203 0 0 3.10559 0.309119 0 0 1.76565 9.14928 0 t 0 44.089 14.2152 59.7111 1.26582 80.1802 0 0 0 22.5124 0 23.5955 22.7929 0
M09674_2.00_rc_shift2 (M09674_2.00_rc)				; positions_6nt_m2 versus M09674_2.00_rc; m=45/61; ncol2=10; w=-2; offset=-2; strand=R; shift=2; score=0.472654; --rrymATAAAa-- ; cor=; Ncor= a 0 0 37.2373 31.0453 0.581395 33.4908 97.093 11.5587 77.201 86.4085 87.1199 48.4407 0 0 c 0 0 9.75194 24.799 44.3691 52.4448 0.968992 6.87239 1.74419 3.53309 2.32558 8.5486 0 0 g 0 0 44.034 40.1401 0.914729 0.968992 0.968992 0.968992 6.0972 0.968992 2.32558 20.6828 0 0 t 0 0 8.97674 4.0155 54.1348 13.0954 0.968992 80.5999 14.9577 9.08945 8.22898 22.328 0 0
M01676_2.00_shift2 (M01676_2.00)				; positions_6nt_m2 versus M01676_2.00; m=46/61; ncol2=10; w=-2; offset=-2; strand=D; shift=2; score=0.470871; --garkmmwwwW-- ; cor=; Ncor= a 0 0 16.758 56.6353 27.8495 19.8637 27.7415 36.1836 47.7449 56.0915 65.1345 71.2595 0 0 c 0 0 10.5791 16.7205 14.2508 13.7205 41.3854 29.6246 4.12008 1.53263 0.215769 2.93389 0 0 g 0 0 59.0791 11.6655 40.3187 39.6026 8.61004 14.1343 21.6688 7.66745 3.8824 0.366531 0 0 t 0 0 13.5838 14.9788 17.5809 26.8132 22.2631 20.0575 26.4663 34.7085 30.7673 25.4401 0 0
M07295_2.00_shift4 (lin-54)				; positions_6nt_m2 versus M07295_2.00 (lin-54); m=47/61; ncol2=15; w=0; offset=0; strand=D; shift=4; score=0.46966; ----WTwaAAwATT ; cor=; Ncor= a 0 0 0 0 26.2982 24.1206 39.6985 60.9715 77.5544 93.6348 56.2814 82.0771 0 0 c 0 0 0 0 2.0101 3.3501 18.7605 8.2077 10.8878 0 2.1776 0 0 0 g 0 0 0 0 3.1826 1.34 2.6801 7.5377 3.0151 5.0251 16.0804 2.6801 0 0 t 0 0 0 0 68.5092 71.1893 38.861 23.2831 8.5427 1.34 25.4606 15.2429 100 100
M08149_2.00_shift2 (mef-2)				; positions_6nt_m2 versus M08149_2.00 (mef-2); m=48/61; ncol2=15; w=-2; offset=-2; strand=D; shift=2; score=0.467795; --rdkcyAAAAATA ; cor=; Ncor= a 0 0 31.9149 33.1824 19.5111 17.2929 0 73.1553 77.2295 95.3825 96.469 96.6501 2.53508 98.5514 c 0 0 14.5315 6.83567 8.87279 63.9203 44.5903 11.589 1.44862 0 0 0 2.8067 0 g 0 0 30.6021 25.9393 37.2114 3.53101 0 3.34993 10.9099 3.93843 0.0905387 0.181077 0 1.44862 t 0 0 22.9516 34.0426 34.4047 15.2558 55.4097 11.9058 10.412 0.67904 3.44047 3.16885 94.6582 0
M03140_2.00_rc_shift2 (nob-1,php-3_rc)				; positions_6nt_m2 versus M03140_2.00_rc (nob-1,php-3_rc); m=49/61; ncol2=10; w=-2; offset=-2; strand=R; shift=2; score=0.467143; --rrymATAAAa-- ; cor=; Ncor= a 0 0 32.381 26.6376 7.37705 51.9802 77.2059 6.45161 68.6275 91.3043 88.9831 64.0244 0 0 c 0 0 5.71429 17.4672 38.5246 39.604 5.88235 5.64516 3.92157 0.869565 2.54237 13.4146 0 0 g 0 0 41.9048 45.8515 6.55738 5.44554 11.0294 3.22581 2.61438 5.21739 4.23729 12.8049 0 0 t 0 0 20 10.0437 47.541 2.9703 5.88235 84.6774 24.8366 2.6087 4.23729 9.7561 0 0
M06197_2.00_shift3 (fkh-2,fkh-6)				; positions_6nt_m2 versus M06197_2.00 (fkh-2,fkh-6); m=50/61; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.465327; ---tvtAAACA--- ; cor=; Ncor= a 0 0 0 15 35 20 100 95 100 0 100 0 0 0 c 0 0 0 0 25 15 0 5 0 85 0 0 0 0 g 0 0 0 20 30 0 0 0 0 0 0 0 0 0 t 0 0 0 65 10 65 0 0 0 15 0 0 0 0
M02530_2.00_shift3 (lin-54)				; positions_6nt_m2 versus M02530_2.00 (lin-54); m=51/61; ncol2=8; w=-1; offset=-1; strand=D; shift=3; score=0.454064; ---ttyrAAww--- ; cor=; Ncor= a 0 0 0 20.9734 17.0043 11.8837 65.3952 80.915 70.7012 26.6361 25.5167 0 0 0 c 0 0 0 22.2703 21.834 41.895 2.946 3.1062 5.52047 23.1563 24.0308 0 0 0 g 0 0 0 21.8294 20.9778 13.2655 27.9509 6.07025 8.92148 8.43396 21.1013 0 0 0 t 0 0 0 34.9269 40.1839 32.9558 3.70784 9.90856 14.8569 41.7737 29.3512 0 0 0
M01209_2.00_shift8 (lin-28)				; positions_6nt_m2 versus M01209_2.00 (lin-28); m=52/61; ncol2=8; w=0; offset=4; strand=D; shift=8; score=0.44782; --------AAAATA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 97.1154 97.1154 97.1154 97.1154 0.961538 97.1154 c 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 g 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 t 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 97.1154 0.961538
M09098_2.00_shift6 (fkh-2)				; positions_6nt_m2 versus M09098_2.00 (fkh-2); m=53/61; ncol2=13; w=0; offset=2; strand=D; shift=6; score=0.426609; ------wAAmmATA ; cor=; Ncor= a 0 0 0 0 0 0 43.2642 96.7191 91.8097 63.0299 45.6508 92.8887 14.4831 81.5473 c 0 0 0 0 0 0 13.8458 1.68075 2.91214 32.5679 43.021 0 3.69269 17.5693 g 0 0 0 0 0 0 7.03788 1.01355 0 0 0 7.11126 0 0 t 0 0 0 0 0 0 35.8521 0.586565 5.27816 4.40217 11.3282 0 81.8242 0.883421
M09102_2.00_shift6 (fkh-2)				; positions_6nt_m2 versus M09102_2.00 (fkh-2); m=54/61; ncol2=13; w=0; offset=2; strand=D; shift=6; score=0.426609; ------wAAmmATA ; cor=; Ncor= a 0 0 0 0 0 0 43.2642 96.7191 91.8097 63.0299 45.6508 92.8887 14.4831 81.5473 c 0 0 0 0 0 0 13.8458 1.68075 2.91214 32.5679 43.021 0 3.69269 17.5693 g 0 0 0 0 0 0 7.03788 1.01355 0 0 0 7.11126 0 0 t 0 0 0 0 0 0 35.8521 0.586565 5.27816 4.40217 11.3282 0 81.8242 0.883421
M03032_2.00_shift4 (fkh-2)				; positions_6nt_m2 versus M03032_2.00 (fkh-2); m=55/61; ncol2=17; w=0; offset=0; strand=D; shift=4; score=0.419323; ----rTAAACAATd ; cor=; Ncor= a 0 0 0 0 57.6733 0.9375 98.0237 100 99.2 0 100 99.2032 4.7619 32.7411 c 0 0 0 0 0 2.8125 1.97628 0 0 97.8947 0 0 11.2245 0.507614 g 0 0 0 0 41.8317 0 0 0 0 0 0 0.796813 7.82313 28.4264 t 0 0 0 0 0.49505 96.25 0 0 0.8 2.10526 0 0 76.1905 38.3249
M11389_2.00_shift1 (tbp-1)				; positions_6nt_m2 versus M11389_2.00 (tbp-1); m=56/61; ncol2=10; w=-3; offset=-3; strand=D; shift=1; score=0.417964; -yCTWTAAAAr--- ; cor=; Ncor= a 0 22.4551 0 2.46821 72.9993 0 100 92.8144 100 100 29.3413 0 0 0 c 0 29.1168 76.2154 24.9065 0 0 0 0 0 0 10.1796 0 0 0 g 0 18.5629 19.8953 0 0 0 0 0 0 0 45.7335 0 0 0 t 0 29.8653 3.8893 72.6253 27.0007 100 0 7.18563 0 0 14.7455 0 0 0
M02736_2.00_shift6 (fkh-2)				; positions_6nt_m2 versus M02736_2.00 (fkh-2); m=57/61; ncol2=12; w=0; offset=2; strand=D; shift=6; score=0.414451; ------AAACAATA ; cor=; Ncor= a 0 0 0 0 0 0 88.626 99.2864 99.6929 0.283822 99.591 75.6799 1.01215 82.6124 c 0 0 0 0 0 0 8.37125 0.101937 0 92.1476 0.102249 0.0777001 0.202429 17.3876 g 0 0 0 0 0 0 0 0.101937 0.307062 0.0946074 0.306748 24.1647 0.202429 0 t 0 0 0 0 0 0 3.00273 0.509684 0 7.47398 0 0.0777001 98.583 0
M03252_2.00_rc_shift1 (php-3_rc)				; positions_6nt_m2 versus M03252_2.00_rc (php-3_rc); m=58/61; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.413624; -gTCrTWAAAw--- ; cor=; Ncor= a 0 23.7829 0.72904 8.37809 50.095 0 71.8204 97.284 94.0334 71.3122 47.0812 0 0 0 c 0 13.328 3.52369 84.6402 0 0 1.24688 0 3.22196 9.04977 20.3046 0 0 0 g 0 62.8891 0 1.28894 49.905 0.126743 0.498753 0 0 5.42986 6.34518 0 0 0 t 0 0 95.7473 5.6928 0 99.8733 26.4339 2.71605 2.74463 14.2081 26.269 0 0 0
M08307_2.00_rc_shift5 (fezf-1_rc)				; positions_6nt_m2 versus M08307_2.00_rc (fezf-1_rc); m=59/61; ncol2=15; w=0; offset=1; strand=R; shift=5; score=0.407564; -----vrrAAAArr ; cor=; Ncor= a 0 0 0 0 0 31.8109 33.734 34.375 68.0288 97.516 99.4391 77.0032 34.6955 44.3109 c 0 0 0 0 0 25.7212 18.0288 20.2724 12.9006 0.0801282 0.0801282 0.0801282 0.0801282 1.68269 g 0 0 0 0 0 26.3622 27.6442 30.8494 15.4647 2.32372 0.0801282 9.69551 57.1314 53.9263 t 0 0 0 0 0 16.1058 20.5929 14.5032 3.60577 0.0801282 0.400641 13.2212 8.09295 0.0801282
M09193_2.00_rc_shift0 (M09193_2.00_rc)				; positions_6nt_m2 versus M09193_2.00_rc; m=60/61; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.401698; arrGymATAAAa-- ; cor=; Ncor= a 56 47.6 40.6 14.6 4 42.2 92.4 1.6 92.8 97.8 96.2 59 0 0 c 12.2 16 4 6.2 56.2 46 1.2 1.6 2 0.2 1.2 13 0 0 g 22.6 25 43 75.4 1.2 0.6 6.2 1.8 1.8 1.2 0.8 16.2 0 0 t 9.2 11.4 12.4 3.8 38.6 11.2 0.2 95 3.4 0.8 1.8 11.8 0 0
M03253_2.00_rc_shift1 (php-3_rc)				; positions_6nt_m2 versus M03253_2.00_rc (php-3_rc); m=61/61; ncol2=10; w=-3; offset=-3; strand=R; shift=1; score=0.400449; -gyaATAAAAa--- ; cor=; Ncor= a 0 16.2188 1.85654 65.8694 93.9361 3.04963 73.7947 98.8604 94.0379 76.2135 47.3912 0 0 0 c 0 11.3017 46.9198 22.5892 2.86952 0 0.311968 0 1.27371 7.35779 20.5823 0 0 0 g 0 66.133 0.534459 6.83371 2.5176 0.748544 1.27623 0 1.54472 6.45728 10.4353 0 0 0 t 0 6.34648 50.6892 4.70767 0.676773 96.2018 24.6171 1.1396 3.14363 9.97145 21.5912 0 0 0