/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans
 Matrices
	file1	2 matrices	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.015247_2026-04-21.015247_DTyOML/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	11	82
		file1	2	10	507
	file2	3438 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
		file2		1		7		100.0001
		file2		2		8		100.00002892
		file2		3		11		100.00004702
		file2		4		9		100
		file2		5		10		100.0001
		file2		6		10		100.0001
		file2		7		13		100.0001
		file2		8		10		100.0001
		file2		9		10		100.0001
		file2		10		10		100.0001
		file2		11		10		100.0001
		...	3428 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m2 M00627_2.00 positions_6nt_m2 K11D2.4 0.911 0.911 10 10 10 10 1.0000 1.0000 1.0000 R 0
positions_6nt_m2 M00613_2.00 positions_6nt_m2 lin-29 0.949 0.759 10 8 8 10 0.8000 0.8000 1.0000 R 1
positions_6nt_m2 M01104_2.00 positions_6nt_m2 M01104_2.00 0.724 0.724 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M00258_2.00 positions_6nt_m2 fkh-2,fkh-6,unc-130 0.743 0.676 10 11 10 11 0.9091 1.0000 0.9091 D -1
positions_6nt_m2 M01686_2.00 positions_6nt_m2 M01686_2.00 0.735 0.662 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M01107_2.00 positions_6nt_m2 M01107_2.00 0.826 0.661 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m1 M07439_2.00 positions_6nt_m1 M07439_2.00 0.806 0.660 11 9 9 11 0.8182 0.8182 1.0000 D 1
positions_6nt_m2 M01106_2.00 positions_6nt_m2 M01106_2.00 0.824 0.659 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m1 M08479_2.00 positions_6nt_m1 M08479_2.00 0.805 0.659 11 9 9 11 0.8182 0.8182 1.0000 D 1
positions_6nt_m2 M01108_2.00 positions_6nt_m2 M01108_2.00 0.817 0.653 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M01105_2.00 positions_6nt_m2 M01105_2.00 0.724 0.652 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M03046_2.00 positions_6nt_m2 fkh-2 0.808 0.646 10 8 8 10 0.8000 0.8000 1.0000 D 0
positions_6nt_m1 M02532_2.00 positions_6nt_m1 lin-54 0.757 0.641 11 13 11 13 0.8462 1.0000 0.8462 D -2
positions_6nt_m2 M01671_2.00 positions_6nt_m2 M01671_2.00 0.712 0.641 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M06203_2.00 positions_6nt_m2 fkh-7 0.956 0.637 10 15 10 15 0.6667 1.0000 0.6667 D -4
positions_6nt_m2 M06202_2.00 positions_6nt_m2 fkh-7 0.891 0.636 10 14 10 14 0.7143 1.0000 0.7143 D -4
positions_6nt_m2 M01674_2.00 positions_6nt_m2 M01674_2.00 0.700 0.630 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M00750_2.00 positions_6nt_m2 M00750_2.00 0.783 0.627 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m1 M00654_2.00 positions_6nt_m1 mab-23 0.861 0.626 11 8 8 11 0.7273 0.7273 1.0000 R 0
positions_6nt_m2 M01680_2.00 positions_6nt_m2 M01680_2.00 0.756 0.605 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m2 M01679_2.00 positions_6nt_m2 M01679_2.00 0.753 0.602 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M01226_2.00 positions_6nt_m2 M01226_2.00 0.745 0.596 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M01688_2.00 positions_6nt_m2 M01688_2.00 0.734 0.587 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m2 M08213_2.00 positions_6nt_m2 mef-2 0.733 0.586 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m2 M09572_2.00 positions_6nt_m2 M09572_2.00 0.708 0.579 10 10 9 11 0.8182 0.9000 0.9000 R -1
positions_6nt_m2 M05114_2.00 positions_6nt_m2 php-3 0.705 0.577 10 10 9 11 0.8182 0.9000 0.9000 R -1
positions_6nt_m2 M00654_2.00 positions_6nt_m2 mab-23 0.721 0.576 10 8 8 10 0.8000 0.8000 1.0000 R 2
positions_6nt_m2 M01687_2.00 positions_6nt_m2 M01687_2.00 0.714 0.571 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m1 M07301_2.00 positions_6nt_m1 lin-54 0.726 0.570 11 14 11 14 0.7857 1.0000 0.7857 D -1
positions_6nt_m2 M01517_2.00 positions_6nt_m2 M01517_2.00 0.710 0.568 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m1 M01108_2.00 positions_6nt_m1 M01108_2.00 0.774 0.563 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m2 M05341_2.00 positions_6nt_m2 php-3 0.729 0.547 10 11 9 12 0.7500 0.9000 0.8182 R -2
positions_6nt_m1 M01691_2.00 positions_6nt_m1 athp-3 0.857 0.545 11 7 7 11 0.6364 0.6364 1.0000 D 0
positions_6nt_m2 M05117_2.00 positions_6nt_m2 php-3 0.724 0.543 10 11 9 12 0.7500 0.9000 0.8182 D -2
positions_6nt_m1 M07300_2.00 positions_6nt_m1 lin-54 0.736 0.539 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m2 M03135_2.00 positions_6nt_m2 ceh-12,php-3 0.738 0.537 10 9 8 11 0.7273 0.8000 0.8889 R -1
positions_6nt_m2 M03206_2.00 positions_6nt_m2 php-3 0.737 0.536 10 9 8 11 0.7273 0.8000 0.8889 D -1
positions_6nt_m2 M05119_2.00 positions_6nt_m2 php-3 0.714 0.535 10 11 9 12 0.7500 0.9000 0.8182 D -2
positions_6nt_m1 M01688_2.00 positions_6nt_m1 M01688_2.00 0.736 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m2 M05395_2.00 positions_6nt_m2 php-3 0.713 0.535 10 11 9 12 0.7500 0.9000 0.8182 R -2
positions_6nt_m1 M01106_2.00 positions_6nt_m1 M01106_2.00 0.735 0.535 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M07295_2.00 positions_6nt_m1 lin-54 0.727 0.533 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m1 M07298_2.00 positions_6nt_m1 lin-54 0.725 0.532 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m2 M05397_2.00 positions_6nt_m2 php-3 0.708 0.531 10 11 9 12 0.7500 0.9000 0.8182 R -2
positions_6nt_m2 M00070_2.00 positions_6nt_m2 sox-2,sox-3,sox-4 0.703 0.528 10 11 9 12 0.7500 0.9000 0.8182 D 1
positions_6nt_m2 M05339_2.00 positions_6nt_m2 php-3 0.703 0.527 10 11 9 12 0.7500 0.9000 0.8182 R -2
positions_6nt_m2 M04830_2.00 positions_6nt_m2 fkh-2,fkh-8 0.761 0.527 10 12 9 13 0.6923 0.9000 0.7500 D -3
positions_6nt_m2 M05337_2.00 positions_6nt_m2 php-3 0.701 0.526 10 11 9 12 0.7500 0.9000 0.8182 R -2
positions_6nt_m1 M01517_2.00 positions_6nt_m1 M01517_2.00 0.722 0.525 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m1 M07296_2.00 positions_6nt_m1 lin-54 0.716 0.525 11 15 11 15 0.7333 1.0000 0.7333 D -1
positions_6nt_m2 M06201_2.00 positions_6nt_m2 fkh-7 0.717 0.521 10 9 8 11 0.7273 0.8000 0.8889 D -1
positions_6nt_m2 M09107_2.00 positions_6nt_m2 M09107_2.00 0.712 0.518 10 9 8 11 0.7273 0.8000 0.8889 D -1
positions_6nt_m1 M07299_2.00 positions_6nt_m1 lin-54 0.702 0.515 11 15 11 15 0.7333 1.0000 0.7333 D -3
positions_6nt_m1 M00008_2.00 positions_6nt_m1 M00008_2.00 0.804 0.512 11 7 7 11 0.6364 0.6364 1.0000 D 1
positions_6nt_m2 M01691_2.00 positions_6nt_m2 athp-3 0.730 0.511 10 7 7 10 0.7000 0.7000 1.0000 D 2
positions_6nt_m1 M01671_2.00 positions_6nt_m1 M01671_2.00 0.766 0.510 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m2 M00008_2.00 positions_6nt_m2 M00008_2.00 0.726 0.508 10 7 7 10 0.7000 0.7000 1.0000 D 3
positions_6nt_m2 M07439_2.00 positions_6nt_m2 M07439_2.00 0.858 0.500 10 9 7 12 0.5833 0.7000 0.7778 D 3
positions_6nt_m2 M08479_2.00 positions_6nt_m2 M08479_2.00 0.857 0.500 10 9 7 12 0.5833 0.7000 0.7778 D 3
positions_6nt_m2 M10565_2.00 positions_6nt_m2 fkh-2,unc-130 0.710 0.492 10 12 9 13 0.6923 0.9000 0.7500 D 1
positions_6nt_m2 M03736_2.00 positions_6nt_m2 fkh-2 0.702 0.486 10 12 9 13 0.6923 0.9000 0.7500 D -3
positions_6nt_m2 M09674_2.00 positions_6nt_m2 M09674_2.00 0.709 0.473 10 10 8 12 0.6667 0.8000 0.8000 R -2
positions_6nt_m2 M01676_2.00 positions_6nt_m2 M01676_2.00 0.706 0.471 10 10 8 12 0.6667 0.8000 0.8000 D -2
positions_6nt_m2 M07295_2.00 positions_6nt_m2 lin-54 0.704 0.470 10 15 10 15 0.6667 1.0000 0.6667 D 0
positions_6nt_m2 M08149_2.00 positions_6nt_m2 mef-2 0.702 0.468 10 15 10 15 0.6667 1.0000 0.6667 D -2
positions_6nt_m1 M01105_2.00 positions_6nt_m1 M01105_2.00 0.701 0.467 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m2 M03140_2.00 positions_6nt_m2 nob-1,php-3 0.701 0.467 10 10 8 12 0.6667 0.8000 0.8000 R -2
positions_6nt_m2 M06197_2.00 positions_6nt_m2 fkh-2,fkh-6 0.731 0.465 10 8 7 11 0.6364 0.7000 0.8750 D -1
positions_6nt_m1 M01104_2.00 positions_6nt_m1 M01104_2.00 0.744 0.458 11 10 8 13 0.6154 0.7273 0.8000 D -2
positions_6nt_m1 M01685_2.00 positions_6nt_m1 M01685_2.00 0.783 0.457 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m2 M02530_2.00 positions_6nt_m2 lin-54 0.714 0.454 10 8 7 11 0.6364 0.7000 0.8750 D -1
positions_6nt_m1 M01692_2.00 positions_6nt_m1 M01692_2.00 0.773 0.451 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M06277_2.00 positions_6nt_m1 alr-1,ceh-1,ceh-12,ceh-13,ceh-16,ceh-17,ceh-2,ceh-43,ceh-7,ceh-8,ceh-9,mab-5,mls-2,tab-1,unc-4,unc-42,vab-15 0.729 0.449 11 10 8 13 0.6154 0.7273 0.8000 R -2
positions_6nt_m2 M01209_2.00 positions_6nt_m2 lin-28 0.896 0.448 10 8 6 12 0.5000 0.6000 0.7500 D 4
positions_6nt_m1 M00206_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.766 0.447 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00204_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.763 0.445 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00209_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.761 0.444 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M01677_2.00 positions_6nt_m1 M01677_2.00 0.755 0.440 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00197_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.745 0.435 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00203_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.743 0.434 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m1 M01679_2.00 positions_6nt_m1 M01679_2.00 0.741 0.432 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 M00613_2.00 positions_6nt_m1 lin-29 0.732 0.427 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m2 M09102_2.00 positions_6nt_m2 fkh-2 0.800 0.427 10 13 8 15 0.5333 0.8000 0.6154 D 2
positions_6nt_m2 M09098_2.00 positions_6nt_m2 fkh-2 0.800 0.427 10 13 8 15 0.5333 0.8000 0.6154 D 2
positions_6nt_m1 M01107_2.00 positions_6nt_m1 M01107_2.00 0.726 0.424 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m2 M03032_2.00 positions_6nt_m2 fkh-2 0.713 0.419 10 17 10 17 0.5882 1.0000 0.5882 D 0
positions_6nt_m2 M11389_2.00 positions_6nt_m2 tbp-1 0.776 0.418 10 10 7 13 0.5385 0.7000 0.7000 D -3
positions_6nt_m2 M02736_2.00 positions_6nt_m2 fkh-2 0.725 0.414 10 12 8 14 0.5714 0.8000 0.6667 D 2
positions_6nt_m2 M03252_2.00 positions_6nt_m2 php-3 0.768 0.414 10 10 7 13 0.5385 0.7000 0.7000 R -3
positions_6nt_m2 M08307_2.00 positions_6nt_m2 fezf-1 0.725 0.408 10 15 9 16 0.5625 0.9000 0.6000 R 1
positions_6nt_m1 M00208_2.00 positions_6nt_m1 sox-2,sox-3,sox-4 0.753 0.406 11 9 7 13 0.5385 0.6364 0.7778 R -2
positions_6nt_m2 M09193_2.00 positions_6nt_m2 M09193_2.00 0.703 0.402 10 12 8 14 0.5714 0.8000 0.6667 R -4
positions_6nt_m2 M03253_2.00 positions_6nt_m2 php-3 0.744 0.400 10 10 7 13 0.5385 0.7000 0.7000 R -3 
 Host name	rsat
 Job started	2026-04-21.015328
 Job done	2026-04-21.015344
 Seconds	1.74
	user	1.75
	system	0.88
	cuser	10.73
;	csystem	2.69