/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
		file1	1	11	111
	file2	3438 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
		file2		1		7		100.0001
		file2		2		8		100.00002892
		file2		3		11		100.00004702
		file2		4		9		100
		file2		5		10		100.0001
		file2		6		10		100.0001
		file2		7		13		100.0001
		file2		8		10		100.0001
		file2		9		10		100.0001
		file2		10		10		100.0001
		file2		11		10		100.0001
		...	3428 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m5 M04690_2.00 oligos_7nt_mkv2_m5 M04690_2.00 0.773 0.703 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m5 M04688_2.00 oligos_7nt_mkv2_m5 M04688_2.00 0.745 0.677 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m5 M04940_2.00 oligos_7nt_mkv2_m5 ceh-33,unc-39 0.715 0.650 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv2_m5 M00595_2.00 oligos_7nt_mkv2_m5 atf-7 0.703 0.639 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m5 M04259_2.00 oligos_7nt_mkv2_m5 crh-1 0.758 0.620 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv2_m5 M04263_2.00 oligos_7nt_mkv2_m5 crh-1 0.725 0.593 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv2_m5 M02390_2.00 oligos_7nt_mkv2_m5 nhr-134,nhr-18,nhr-96 0.765 0.556 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv2_m5 M02391_2.00 oligos_7nt_mkv2_m5 WBGene00003673,nhr-130,nhr-133,nhr-179,nhr-183,nhr-184,nhr-190,nhr-212 0.928 0.541 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv2_m5 M04023_2.00 oligos_7nt_mkv2_m5 crh-1 0.708 0.531 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_7nt_mkv2_m5 M09948_2.00 oligos_7nt_mkv2_m5 crh-1 0.717 0.521 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv2_m5 M05150_2.00 oligos_7nt_mkv2_m5 ceh-27 0.743 0.495 11 14 10 15 0.6667 0.9091 0.7143 D -4
oligos_7nt_mkv2_m5 M00701_2.00 oligos_7nt_mkv2_m5 WBGene00003673,nhr-123,nhr-130,nhr-133,nhr-179,nhr-182,nhr-183,nhr-184,nhr-190,nhr-201,nhr-202,nhr-212,nhr-44,nhr-59,nhr-98 0.800 0.492 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv2_m5 M00702_2.00 oligos_7nt_mkv2_m5 WBGene00003673,nhr-123,nhr-130,nhr-133,nhr-179,nhr-182,nhr-183,nhr-184,nhr-190,nhr-201,nhr-202,nhr-212,nhr-44,nhr-59,nhr-98 0.760 0.468 11 10 8 13 0.6154 0.7273 0.8000 R 3
oligos_7nt_mkv2_m5 M00928_2.00 oligos_7nt_mkv2_m5 HLH27,hlh-27 0.794 0.463 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv2_m5 M05000_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1,php-3 0.794 0.463 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05409_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1 0.777 0.453 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M00932_2.00 oligos_7nt_mkv2_m5 hlh-25,hlh-27 0.776 0.453 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv2_m5 M05312_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1,php-3 0.768 0.448 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05050_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1,php-3 0.758 0.442 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M04976_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1,php-3 0.756 0.441 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05406_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1 0.756 0.441 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M04914_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1,php-3 0.753 0.439 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05071_2.00 oligos_7nt_mkv2_m5 mab-5,nob-1 0.751 0.438 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05411_2.00 oligos_7nt_mkv2_m5 alr-1,ceh-12,ceh-14,ceh-17,ceh-43,ceh-8,lin-11,mec-3,ttx-3,unc-4,unc-42,vab-15 0.749 0.437 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05279_2.00 oligos_7nt_mkv2_m5 php-3 0.708 0.436 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_7nt_mkv2_m5 M05100_2.00 oligos_7nt_mkv2_m5 ceh-1,ceh-12,ceh-13,ceh-16,ceh-43,tab-1,vab-15 0.726 0.423 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m5 M05044_2.00 oligos_7nt_mkv2_m5 ceh-27 0.772 0.416 11 9 7 13 0.5385 0.6364 0.7778 D -2
oligos_7nt_mkv2_m5 M05152_2.00 oligos_7nt_mkv2_m5 ceh-27 0.769 0.414 11 9 7 13 0.5385 0.6364 0.7778 D -2
oligos_7nt_mkv2_m5 M05348_2.00 oligos_7nt_mkv2_m5 ceh-27 0.756 0.407 11 9 7 13 0.5385 0.6364 0.7778 D -2 
 Host name	rsat
 Job started	2026-04-21.022423
 Job done	2026-04-21.022430
 Seconds	1.38
	user	1.38
	system	0.39
	cuser	3.82
;	csystem	0.75