One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
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; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; bmGCAAGACdr
; Alignment reference
a 2 43 0 19 115 116 0 132 3 51 64
c 38 48 0 113 0 0 16 0 113 2 20
g 56 17 116 0 1 16 111 0 16 41 48
t 36 24 16 0 16 0 5 0 0 38 0
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| oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1) |
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; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; bmGCAAGACdr
; cor=; Ncor=
a 2 43 0 19 115 116 0 132 3 51 64
c 38 48 0 113 0 0 16 0 113 2 20
g 56 17 116 0 1 16 111 0 16 41 48
t 36 24 16 0 16 0 5 0 0 38 0
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3) |
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; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; mhGCACTCCGy
; Alignment reference
a 32 19 16 0 72 16 0 0 0 4 18
c 33 32 0 75 3 54 0 75 75 3 19
g 3 1 59 0 0 3 0 0 0 52 3
t 7 23 0 0 0 2 75 0 0 16 35
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| oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3) |
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; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mhGCACTCCGy
; cor=; Ncor=
a 32 19 16 0 72 16 0 0 0 4 18
c 33 32 0 75 3 54 0 75 75 3 19
g 3 1 59 0 0 3 0 0 0 52 3
t 7 23 0 0 0 2 75 0 0 16 35
|
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4) |
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; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; TCTGGCTTCAym
; Alignment reference
a 11 1 0 0 0 0 0 0 0 48 0 28
c 0 44 0 0 0 57 11 0 59 9 31 19
g 0 13 0 59 59 0 0 0 0 0 1 0
t 48 1 59 0 0 2 48 59 0 2 27 12
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| oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4) |
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; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; TCTGGCTTCAym
; cor=; Ncor=
a 11 1 0 0 0 0 0 0 0 48 0 28
c 0 44 0 0 0 57 11 0 59 9 31 19
g 0 13 0 59 59 0 0 0 0 0 1 0
t 48 1 59 0 0 2 48 59 0 2 27 12
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One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5) |
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; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; aaACGACACvm
; Alignment reference
a 67 49 111 16 1 95 0 94 0 33 46
c 16 26 0 94 0 0 98 16 98 32 36
g 16 19 0 0 108 0 0 0 0 40 12
t 12 17 0 1 2 16 13 1 13 6 17
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| oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5) |
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; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; aaACGACACvm
; cor=; Ncor=
a 67 49 111 16 1 95 0 94 0 33 46
c 16 26 0 94 0 0 98 16 98 32 36
g 16 19 0 0 108 0 0 0 0 40 12
t 12 17 0 1 2 16 13 1 13 6 17
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One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2) |
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; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; TtTGGTGAAck
; Alignment reference
a 19 29 3 16 3 0 0 136 151 32 21
c 4 22 3 0 3 0 0 0 0 101 8
g 18 4 0 131 147 5 150 16 2 10 83
t 112 98 147 6 0 148 3 1 0 10 41
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| oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2) |
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; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; TtTGGTGAAck
; cor=; Ncor=
a 19 29 3 16 3 0 0 136 151 32 21
c 4 22 3 0 3 0 0 0 0 101 8
g 18 4 0 131 147 5 150 16 2 10 83
t 112 98 147 6 0 148 3 1 0 10 41
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