RSAT - peak-motifs result

Analysis: N2-C (21/04/2026 02:24)

peak-motifs  -v 1 -title N2-C -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5

motif discovery
oligos_6nt_mkv2	Not a single significant pattern	[oligos_6nt_mkv2]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gcaagac (sig=1.02; e-value=0.095) RC: gtcttgc oligos_7nt_mkv2_m2 assembly: tggtgaa (sig=0.97; e-value=0.11) RC: ttcacca oligos_7nt_mkv2_m3 assembly: gcactcc (sig=0.85; e-value=0.14) RC: ggagtgc oligos_7nt_mkv2_m4 assembly: tggcttca (sig=0.75; e-value=0.18) RC: tgaagcca oligos_7nt_mkv2_m5 assembly: acgacac (sig=0.51; e-value=0.31) RC: gtgtcgt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_7nt_mkv2_m1	k-mer sig=1.02; evalue=0.095 smGCAAGACrv BYGTCTTGCKS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor smGCAAGACrv sma-4 MA0925.2 R 7 0.6364 0.751 0.478 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor smGCAAGACrv Y48G1C.6 M00591_2.00 D 9 0.7500 0.746 0.560 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (4.84%) Max nb of predicted sites per peak: 96  (chrI:15064098-15067539) Mean nb of predicted sites per peak: 35.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_7nt_mkv2_m2	k-mer sig=0.97; evalue=0.11 tttGGtGAACG CGTTCACCAAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tttGGtGAACG Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tttGGtGAACG ztf-27 M00629_2.00 D 7 0.5833 0.866 0.505 NA NA blmp-1 M08195_2.00 R 8 0.6154 0.749 0.461 NA NA nhr-91 M02403_2.00 R 7 0.6364 0.702 0.447 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (8.06%) Max nb of predicted sites per peak: 62  (chrV:5284693-5285581) Mean nb of predicted sites per peak: 24.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_7nt_mkv2_m3	k-mer sig=0.85; evalue=0.14 MCGCACtCCGy RCGGAGTGCGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor MCGCACtCCGy Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor MCGCACtCCGy egl-44 M05824_2.00 R 10 0.9091 0.753 0.684 NA NA egl-44 M03995_2.00 R 10 0.9091 0.740 0.673 NA NA egl-44 M03996_2.00 R 11 0.9167 0.734 0.673 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (6.45%) Max nb of predicted sites per peak: 64  (chrI:15064098-15067539) Mean nb of predicted sites per peak: 17.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_7nt_mkv2_m4	k-mer sig=0.75; evalue=0.18 tStGGCytCMYm KRKGARGCCASA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tStGGCytCMYm che-1 MA0260.1 R 6 0.5000 0.911 0.455 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tStGGCytCMYm che-1 M00609_2.00 R 10 0.8333 0.789 0.658 NA NA ztf-28 M01867_2.00 D 10 0.8333 0.741 0.618 NA NA lsy-27 M00624_2.00 D 10 0.8333 0.721 0.601 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (9.68%) Max nb of predicted sites per peak: 16  (chrI:15064098-15067539) Mean nb of predicted sites per peak: 9.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv2_m5	k-mer sig=0.51; evalue=0.31 amACGACACvm KBGTGTCGTKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amACGACACvm Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amACGACACvm M04690_2.00 M04690_2.00 R 10 0.9091 0.773 0.703 NA NA M04688_2.00 M04688_2.00 R 10 0.9091 0.745 0.677 NA NA ceh-33,unc-39 M04940_2.00 R 10 0.9091 0.715 0.650 NA NA Total matches= 29 (26 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (8.06%) Max nb of predicted sites per peak: 64  (chrI:15064098-15067539) Mean nb of predicted sites per peak: 18.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title N2-C -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5

Warning: Not a single pattern was found in file tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/04/21/peak-motifs.2026-04-21.022353_2026-04-21.022353_CcghX5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab